Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10855 and HMPREF1058_RS10850 are separated by 227 nucleotides HMPREF1058_RS10850 and HMPREF1058_RS10845 are separated by 14 nucleotides HMPREF1058_RS10845 and HMPREF1058_RS10840 are separated by 15 nucleotides
HMPREF1058_RS10855: HMPREF1058_RS10855 - glycosyltransferase family 2 protein, at 547,491 to 548,396
_RS10855
HMPREF1058_RS10850: HMPREF1058_RS10850 - glycosyltransferase family 2 protein, at 548,624 to 549,523
_RS10850
HMPREF1058_RS10845: HMPREF1058_RS10845 - hypothetical protein, at 549,538 to 550,290
_RS10845
HMPREF1058_RS10840: HMPREF1058_RS10840 - hypothetical protein, at 550,306 to 551,022
_RS10840
Position (kb) 548
549
550 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 547.630 kb on + strand, within HMPREF1058_RS10855 at 547.630 kb on + strand, within HMPREF1058_RS10855 at 547.696 kb on - strand, within HMPREF1058_RS10855 at 547.729 kb on - strand, within HMPREF1058_RS10855 at 547.729 kb on - strand, within HMPREF1058_RS10855 at 547.731 kb on - strand, within HMPREF1058_RS10855 at 547.743 kb on + strand, within HMPREF1058_RS10855 at 547.743 kb on + strand, within HMPREF1058_RS10855 at 547.744 kb on - strand, within HMPREF1058_RS10855 at 547.744 kb on - strand, within HMPREF1058_RS10855 at 547.786 kb on - strand, within HMPREF1058_RS10855 at 547.908 kb on + strand, within HMPREF1058_RS10855 at 547.909 kb on - strand, within HMPREF1058_RS10855 at 547.916 kb on + strand, within HMPREF1058_RS10855 at 547.996 kb on + strand, within HMPREF1058_RS10855 at 547.997 kb on - strand, within HMPREF1058_RS10855 at 547.998 kb on + strand, within HMPREF1058_RS10855 at 547.999 kb on - strand, within HMPREF1058_RS10855 at 548.030 kb on - strand, within HMPREF1058_RS10855 at 548.073 kb on - strand, within HMPREF1058_RS10855 at 548.099 kb on + strand, within HMPREF1058_RS10855 at 548.125 kb on + strand, within HMPREF1058_RS10855 at 548.126 kb on - strand, within HMPREF1058_RS10855 at 548.146 kb on - strand, within HMPREF1058_RS10855 at 548.213 kb on + strand, within HMPREF1058_RS10855 at 548.214 kb on - strand, within HMPREF1058_RS10855 at 548.252 kb on + strand, within HMPREF1058_RS10855 at 548.360 kb on + strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.370 kb on + strand at 548.385 kb on + strand at 548.386 kb on - strand at 548.401 kb on - strand at 548.430 kb on + strand at 548.434 kb on - strand at 548.443 kb on + strand at 548.484 kb on + strand at 548.486 kb on + strand at 548.486 kb on + strand at 548.486 kb on + strand at 548.487 kb on - strand at 548.499 kb on - strand at 548.532 kb on - strand at 548.565 kb on + strand at 548.566 kb on - strand at 548.571 kb on - strand at 548.571 kb on - strand at 548.574 kb on + strand at 548.651 kb on + strand at 548.652 kb on - strand at 548.686 kb on + strand at 548.741 kb on - strand, within HMPREF1058_RS10850 at 548.741 kb on - strand, within HMPREF1058_RS10850 at 548.783 kb on + strand, within HMPREF1058_RS10850 at 548.783 kb on + strand, within HMPREF1058_RS10850 at 548.807 kb on + strand, within HMPREF1058_RS10850 at 548.920 kb on + strand, within HMPREF1058_RS10850 at 548.921 kb on - strand, within HMPREF1058_RS10850 at 548.923 kb on - strand, within HMPREF1058_RS10850 at 548.968 kb on + strand, within HMPREF1058_RS10850 at 549.008 kb on + strand, within HMPREF1058_RS10850 at 549.008 kb on + strand, within HMPREF1058_RS10850 at 549.009 kb on - strand, within HMPREF1058_RS10850 at 549.108 kb on + strand, within HMPREF1058_RS10850 at 549.109 kb on - strand, within HMPREF1058_RS10850 at 549.161 kb on + strand, within HMPREF1058_RS10850 at 549.306 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.416 kb on - strand, within HMPREF1058_RS10850 at 549.420 kb on - strand, within HMPREF1058_RS10850 at 549.515 kb on - strand at 550.479 kb on - strand, within HMPREF1058_RS10840
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 547,630 + HMPREF1058_RS10855 0.15 -2.1 547,630 + HMPREF1058_RS10855 0.15 -2.4 547,696 - HMPREF1058_RS10855 0.23 -0.7 547,729 - HMPREF1058_RS10855 0.26 -2.7 547,729 - HMPREF1058_RS10855 0.26 -2.3 547,731 - HMPREF1058_RS10855 0.26 -3.3 547,743 + HMPREF1058_RS10855 0.28 -3.3 547,743 + HMPREF1058_RS10855 0.28 -3.1 547,744 - HMPREF1058_RS10855 0.28 -2.0 547,744 - HMPREF1058_RS10855 0.28 -3.1 547,786 - HMPREF1058_RS10855 0.33 -0.3 547,908 + HMPREF1058_RS10855 0.46 -2.3 547,909 - HMPREF1058_RS10855 0.46 -0.3 547,916 + HMPREF1058_RS10855 0.47 -3.5 547,996 + HMPREF1058_RS10855 0.56 -1.3 547,997 - HMPREF1058_RS10855 0.56 -1.3 547,998 + HMPREF1058_RS10855 0.56 -2.5 547,999 - HMPREF1058_RS10855 0.56 -1.3 548,030 - HMPREF1058_RS10855 0.59 -1.8 548,073 - HMPREF1058_RS10855 0.64 -4.1 548,099 + HMPREF1058_RS10855 0.67 -1.7 548,125 + HMPREF1058_RS10855 0.70 -1.5 548,126 - HMPREF1058_RS10855 0.70 -2.8 548,146 - HMPREF1058_RS10855 0.72 -3.7 548,213 + HMPREF1058_RS10855 0.80 -1.9 548,214 - HMPREF1058_RS10855 0.80 -2.5 548,252 + HMPREF1058_RS10855 0.84 -2.7 548,360 + -1.9 548,361 - -3.1 548,361 - -3.7 548,361 - -4.1 548,370 + -4.8 548,385 + -1.9 548,386 - -3.3 548,401 - +0.3 548,430 + -3.8 548,434 - +0.2 548,443 + -1.3 548,484 + -2.2 548,486 + -2.7 548,486 + -3.0 548,486 + -2.1 548,487 - +0.0 548,499 - +1.7 548,532 - +1.4 548,565 + -3.1 548,566 - +1.0 548,571 - -2.1 548,571 - -0.2 548,574 + -1.3 548,651 + -5.4 548,652 - -2.7 548,686 + -2.3 548,741 - HMPREF1058_RS10850 0.13 -4.4 548,741 - HMPREF1058_RS10850 0.13 -4.2 548,783 + HMPREF1058_RS10850 0.18 -4.7 548,783 + HMPREF1058_RS10850 0.18 -4.7 548,807 + HMPREF1058_RS10850 0.20 -6.0 548,920 + HMPREF1058_RS10850 0.33 -4.7 548,921 - HMPREF1058_RS10850 0.33 -5.1 548,923 - HMPREF1058_RS10850 0.33 -3.3 548,968 + HMPREF1058_RS10850 0.38 -5.0 549,008 + HMPREF1058_RS10850 0.43 -0.3 549,008 + HMPREF1058_RS10850 0.43 -5.6 549,009 - HMPREF1058_RS10850 0.43 -4.3 549,108 + HMPREF1058_RS10850 0.54 -1.3 549,109 - HMPREF1058_RS10850 0.54 -3.1 549,161 + HMPREF1058_RS10850 0.60 -3.6 549,306 + HMPREF1058_RS10850 0.76 -3.5 549,311 + HMPREF1058_RS10850 0.76 -1.3 549,311 + HMPREF1058_RS10850 0.76 -3.7 549,312 - HMPREF1058_RS10850 0.76 -4.1 549,312 - HMPREF1058_RS10850 0.76 -3.1 549,312 - HMPREF1058_RS10850 0.76 -3.8 549,321 + HMPREF1058_RS10850 0.77 -4.4 549,321 + HMPREF1058_RS10850 0.77 -3.9 549,321 + HMPREF1058_RS10850 0.77 -5.9 549,322 - HMPREF1058_RS10850 0.78 -5.0 549,322 - HMPREF1058_RS10850 0.78 -5.7 549,322 - HMPREF1058_RS10850 0.78 -4.5 549,416 - HMPREF1058_RS10850 0.88 -2.3 549,420 - HMPREF1058_RS10850 0.88 -3.9 549,515 - -4.6 550,479 - HMPREF1058_RS10840 0.24 -2.9
Or see this region's nucleotide sequence