Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10850 and HMPREF1058_RS10845 are separated by 14 nucleotides HMPREF1058_RS10845 and HMPREF1058_RS10840 are separated by 15 nucleotides HMPREF1058_RS10840 and HMPREF1058_RS10835 are separated by 83 nucleotides
HMPREF1058_RS10850: HMPREF1058_RS10850 - glycosyltransferase family 2 protein, at 548,624 to 549,523
_RS10850
HMPREF1058_RS10845: HMPREF1058_RS10845 - hypothetical protein, at 549,538 to 550,290
_RS10845
HMPREF1058_RS10840: HMPREF1058_RS10840 - hypothetical protein, at 550,306 to 551,022
_RS10840
HMPREF1058_RS10835: HMPREF1058_RS10835 - UDP-galactopyranose mutase, at 551,106 to 552,212
_RS10835
Position (kb) 550
551
552 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 549.306 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.416 kb on - strand, within HMPREF1058_RS10850 at 549.420 kb on - strand, within HMPREF1058_RS10850 at 549.515 kb on - strand at 550.479 kb on - strand, within HMPREF1058_RS10840 at 550.692 kb on - strand, within HMPREF1058_RS10840 at 550.796 kb on - strand, within HMPREF1058_RS10840 at 550.800 kb on - strand, within HMPREF1058_RS10840 at 551.036 kb on - strand at 551.059 kb on - strand at 551.059 kb on - strand at 551.167 kb on + strand at 551.315 kb on - strand, within HMPREF1058_RS10835 at 551.322 kb on + strand at 551.377 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.445 kb on - strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.859 kb on + strand, within HMPREF1058_RS10835 at 551.860 kb on - strand, within HMPREF1058_RS10835 at 552.000 kb on + strand, within HMPREF1058_RS10835 at 552.001 kb on - strand, within HMPREF1058_RS10835 at 552.005 kb on - strand, within HMPREF1058_RS10835 at 552.020 kb on + strand, within HMPREF1058_RS10835
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 549,306 + HMPREF1058_RS10850 0.76 -3.5 549,311 + HMPREF1058_RS10850 0.76 -1.3 549,311 + HMPREF1058_RS10850 0.76 -3.7 549,312 - HMPREF1058_RS10850 0.76 -4.1 549,312 - HMPREF1058_RS10850 0.76 -3.1 549,312 - HMPREF1058_RS10850 0.76 -3.8 549,321 + HMPREF1058_RS10850 0.77 -4.4 549,321 + HMPREF1058_RS10850 0.77 -3.9 549,321 + HMPREF1058_RS10850 0.77 -5.9 549,322 - HMPREF1058_RS10850 0.78 -5.0 549,322 - HMPREF1058_RS10850 0.78 -5.7 549,322 - HMPREF1058_RS10850 0.78 -4.5 549,416 - HMPREF1058_RS10850 0.88 -2.3 549,420 - HMPREF1058_RS10850 0.88 -3.9 549,515 - -4.6 550,479 - HMPREF1058_RS10840 0.24 -2.9 550,692 - HMPREF1058_RS10840 0.54 -1.3 550,796 - HMPREF1058_RS10840 0.68 -4.0 550,800 - HMPREF1058_RS10840 0.69 -2.3 551,036 - -0.0 551,059 - +0.7 551,059 - -0.3 551,167 + -2.9 551,315 - HMPREF1058_RS10835 0.19 -1.9 551,322 + -0.3 551,377 + HMPREF1058_RS10835 0.24 -3.9 551,444 + HMPREF1058_RS10835 0.31 -2.9 551,444 + HMPREF1058_RS10835 0.31 -1.9 551,445 - HMPREF1058_RS10835 0.31 -0.3 551,505 + HMPREF1058_RS10835 0.36 -3.3 551,505 + HMPREF1058_RS10835 0.36 -2.9 551,566 + HMPREF1058_RS10835 0.42 -2.9 551,566 + HMPREF1058_RS10835 0.42 -3.8 551,859 + HMPREF1058_RS10835 0.68 -2.3 551,860 - HMPREF1058_RS10835 0.68 -3.3 552,000 + HMPREF1058_RS10835 0.81 -1.3 552,001 - HMPREF1058_RS10835 0.81 -3.1 552,005 - HMPREF1058_RS10835 0.81 -3.3 552,020 + HMPREF1058_RS10835 0.83 -2.3
Or see this region's nucleotide sequence