Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10715 and HMPREF1058_RS10710 overlap by 4 nucleotides HMPREF1058_RS10710 and HMPREF1058_RS10705 are separated by 88 nucleotides
HMPREF1058_RS10715: HMPREF1058_RS10715 - Ig-like domain-containing protein, at 588,328 to 590,250
_RS10715
HMPREF1058_RS10710: HMPREF1058_RS10710 - DUF3108 domain-containing protein, at 590,247 to 591,056
_RS10710
HMPREF1058_RS10705: HMPREF1058_RS10705 - hypothetical protein, at 591,145 to 591,966
_RS10705
Position (kb) 590
591
592 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 590.150 kb on + strand at 590.151 kb on - strand at 590.214 kb on + strand at 590.215 kb on - strand at 590.258 kb on + strand at 590.269 kb on + strand at 590.350 kb on + strand, within HMPREF1058_RS10710 at 590.426 kb on + strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.431 kb on - strand, within HMPREF1058_RS10710 at 590.453 kb on + strand, within HMPREF1058_RS10710 at 590.456 kb on + strand, within HMPREF1058_RS10710 at 590.510 kb on + strand, within HMPREF1058_RS10710 at 590.523 kb on - strand, within HMPREF1058_RS10710 at 590.599 kb on + strand, within HMPREF1058_RS10710 at 590.599 kb on + strand, within HMPREF1058_RS10710 at 590.612 kb on + strand, within HMPREF1058_RS10710 at 590.645 kb on + strand, within HMPREF1058_RS10710 at 590.696 kb on + strand, within HMPREF1058_RS10710 at 590.706 kb on - strand, within HMPREF1058_RS10710 at 590.716 kb on + strand, within HMPREF1058_RS10710 at 590.743 kb on + strand, within HMPREF1058_RS10710 at 590.743 kb on + strand, within HMPREF1058_RS10710 at 590.820 kb on + strand, within HMPREF1058_RS10710 at 590.917 kb on + strand, within HMPREF1058_RS10710 at 590.917 kb on + strand, within HMPREF1058_RS10710 at 590.918 kb on - strand, within HMPREF1058_RS10710 at 590.918 kb on - strand, within HMPREF1058_RS10710 at 590.973 kb on + strand, within HMPREF1058_RS10710 at 591.034 kb on + strand at 591.046 kb on + strand at 591.072 kb on + strand at 591.072 kb on + strand at 591.072 kb on + strand at 591.072 kb on + strand at 591.073 kb on - strand at 591.073 kb on - strand at 591.123 kb on + strand at 591.124 kb on - strand at 591.141 kb on + strand at 591.142 kb on - strand at 591.147 kb on - strand at 591.202 kb on + strand at 591.203 kb on - strand at 591.281 kb on - strand, within HMPREF1058_RS10705 at 591.281 kb on - strand, within HMPREF1058_RS10705 at 591.304 kb on - strand, within HMPREF1058_RS10705 at 591.306 kb on + strand, within HMPREF1058_RS10705 at 591.306 kb on + strand, within HMPREF1058_RS10705 at 591.306 kb on + strand, within HMPREF1058_RS10705 at 591.307 kb on - strand, within HMPREF1058_RS10705 at 591.334 kb on + strand, within HMPREF1058_RS10705 at 591.346 kb on + strand, within HMPREF1058_RS10705 at 591.347 kb on - strand, within HMPREF1058_RS10705 at 591.347 kb on - strand, within HMPREF1058_RS10705 at 591.384 kb on + strand, within HMPREF1058_RS10705 at 591.387 kb on - strand, within HMPREF1058_RS10705 at 591.387 kb on - strand, within HMPREF1058_RS10705 at 591.387 kb on - strand, within HMPREF1058_RS10705 at 591.415 kb on - strand, within HMPREF1058_RS10705 at 591.441 kb on - strand, within HMPREF1058_RS10705 at 591.443 kb on - strand, within HMPREF1058_RS10705 at 591.443 kb on - strand, within HMPREF1058_RS10705 at 591.514 kb on - strand, within HMPREF1058_RS10705 at 591.515 kb on + strand, within HMPREF1058_RS10705 at 591.516 kb on - strand, within HMPREF1058_RS10705 at 591.573 kb on + strand at 591.577 kb on + strand, within HMPREF1058_RS10705 at 591.578 kb on - strand, within HMPREF1058_RS10705 at 591.599 kb on - strand, within HMPREF1058_RS10705 at 591.628 kb on - strand, within HMPREF1058_RS10705 at 591.713 kb on + strand, within HMPREF1058_RS10705 at 591.920 kb on - strand at 591.949 kb on + strand at 591.950 kb on - strand at 591.957 kb on + strand at 591.958 kb on - strand at 591.991 kb on + strand at 591.996 kb on + strand at 591.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 590,150 + -0.8 590,151 - -4.1 590,214 + +0.6 590,215 - -3.3 590,258 + -6.7 590,269 + -4.8 590,350 + HMPREF1058_RS10710 0.13 -4.5 590,426 + HMPREF1058_RS10710 0.22 -5.1 590,427 - HMPREF1058_RS10710 0.22 -4.4 590,427 - HMPREF1058_RS10710 0.22 -4.2 590,427 - HMPREF1058_RS10710 0.22 -3.9 590,427 - HMPREF1058_RS10710 0.22 -1.3 590,431 - HMPREF1058_RS10710 0.23 -3.9 590,453 + HMPREF1058_RS10710 0.25 -4.4 590,456 + HMPREF1058_RS10710 0.26 -1.9 590,510 + HMPREF1058_RS10710 0.32 -5.8 590,523 - HMPREF1058_RS10710 0.34 -3.9 590,599 + HMPREF1058_RS10710 0.43 -0.3 590,599 + HMPREF1058_RS10710 0.43 -5.4 590,612 + HMPREF1058_RS10710 0.45 -4.0 590,645 + HMPREF1058_RS10710 0.49 -6.0 590,696 + HMPREF1058_RS10710 0.55 -4.5 590,706 - HMPREF1058_RS10710 0.57 -4.4 590,716 + HMPREF1058_RS10710 0.58 -3.9 590,743 + HMPREF1058_RS10710 0.61 -3.1 590,743 + HMPREF1058_RS10710 0.61 -5.1 590,820 + HMPREF1058_RS10710 0.71 -1.9 590,917 + HMPREF1058_RS10710 0.83 -1.9 590,917 + HMPREF1058_RS10710 0.83 -0.3 590,918 - HMPREF1058_RS10710 0.83 -4.4 590,918 - HMPREF1058_RS10710 0.83 -5.5 590,973 + HMPREF1058_RS10710 0.90 -3.5 591,034 + +0.5 591,046 + -0.8 591,072 + +0.3 591,072 + +3.0 591,072 + +1.8 591,072 + +0.8 591,073 - -2.7 591,073 - +0.7 591,123 + +0.1 591,124 - -1.9 591,141 + -0.4 591,142 - -1.3 591,147 - +1.8 591,202 + -0.1 591,203 - +0.7 591,281 - HMPREF1058_RS10705 0.17 -1.9 591,281 - HMPREF1058_RS10705 0.17 -0.3 591,304 - HMPREF1058_RS10705 0.19 +1.2 591,306 + HMPREF1058_RS10705 0.20 -1.3 591,306 + HMPREF1058_RS10705 0.20 -1.3 591,306 + HMPREF1058_RS10705 0.20 -0.6 591,307 - HMPREF1058_RS10705 0.20 +1.3 591,334 + HMPREF1058_RS10705 0.23 +2.1 591,346 + HMPREF1058_RS10705 0.24 -0.1 591,347 - HMPREF1058_RS10705 0.25 +0.5 591,347 - HMPREF1058_RS10705 0.25 -0.9 591,384 + HMPREF1058_RS10705 0.29 -1.3 591,387 - HMPREF1058_RS10705 0.29 -1.5 591,387 - HMPREF1058_RS10705 0.29 +2.3 591,387 - HMPREF1058_RS10705 0.29 +0.9 591,415 - HMPREF1058_RS10705 0.33 -1.1 591,441 - HMPREF1058_RS10705 0.36 +0.7 591,443 - HMPREF1058_RS10705 0.36 +2.1 591,443 - HMPREF1058_RS10705 0.36 +0.2 591,514 - HMPREF1058_RS10705 0.45 -0.4 591,515 + HMPREF1058_RS10705 0.45 -1.0 591,516 - HMPREF1058_RS10705 0.45 +1.7 591,573 + +1.7 591,577 + HMPREF1058_RS10705 0.53 -0.1 591,578 - HMPREF1058_RS10705 0.53 +0.9 591,599 - HMPREF1058_RS10705 0.55 -0.6 591,628 - HMPREF1058_RS10705 0.59 +0.2 591,713 + HMPREF1058_RS10705 0.69 +0.3 591,920 - -0.3 591,949 + +0.5 591,950 - +0.1 591,957 + -1.1 591,958 - -0.3 591,991 + -0.2 591,996 + -0.1 591,997 - +0.3
Or see this region's nucleotide sequence