Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09740 and HMPREF1058_RS09735 overlap by 28 nucleotides HMPREF1058_RS09735 and HMPREF1058_RS09730 are separated by 13 nucleotides HMPREF1058_RS09730 and HMPREF1058_RS09725 are separated by 3 nucleotides
HMPREF1058_RS09740: HMPREF1058_RS09740 - glycosyltransferase family 4 protein, at 806,575 to 807,690
_RS09740
HMPREF1058_RS09735: HMPREF1058_RS09735 - hypothetical protein, at 807,663 to 808,679
_RS09735
HMPREF1058_RS09730: HMPREF1058_RS09730 - LicD family protein, at 808,693 to 809,490
_RS09730
HMPREF1058_RS09725: HMPREF1058_RS09725 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 809,494 to 810,594
_RS09725
Position (kb) 807
808
809 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 806.766 kb on - strand, within HMPREF1058_RS09740 at 806.766 kb on - strand, within HMPREF1058_RS09740 at 806.783 kb on - strand, within HMPREF1058_RS09740 at 806.797 kb on + strand, within HMPREF1058_RS09740 at 806.797 kb on + strand, within HMPREF1058_RS09740 at 806.883 kb on + strand, within HMPREF1058_RS09740 at 806.949 kb on - strand, within HMPREF1058_RS09740 at 806.967 kb on + strand, within HMPREF1058_RS09740 at 806.970 kb on - strand, within HMPREF1058_RS09740 at 807.021 kb on - strand, within HMPREF1058_RS09740 at 807.046 kb on + strand, within HMPREF1058_RS09740 at 807.047 kb on - strand, within HMPREF1058_RS09740 at 807.050 kb on + strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.129 kb on + strand, within HMPREF1058_RS09740 at 807.176 kb on + strand, within HMPREF1058_RS09740 at 807.176 kb on + strand, within HMPREF1058_RS09740 at 807.177 kb on - strand, within HMPREF1058_RS09740 at 807.279 kb on + strand, within HMPREF1058_RS09740 at 807.279 kb on + strand, within HMPREF1058_RS09740 at 807.296 kb on + strand, within HMPREF1058_RS09740 at 807.297 kb on - strand, within HMPREF1058_RS09740 at 807.400 kb on + strand, within HMPREF1058_RS09740 at 807.401 kb on - strand, within HMPREF1058_RS09740 at 807.433 kb on - strand, within HMPREF1058_RS09740 at 807.477 kb on + strand, within HMPREF1058_RS09740 at 807.485 kb on + strand, within HMPREF1058_RS09740 at 807.493 kb on + strand, within HMPREF1058_RS09740 at 807.494 kb on - strand, within HMPREF1058_RS09740 at 807.525 kb on + strand, within HMPREF1058_RS09740 at 807.525 kb on + strand, within HMPREF1058_RS09740 at 807.595 kb on - strand at 807.648 kb on - strand at 807.651 kb on + strand at 807.783 kb on - strand, within HMPREF1058_RS09735 at 807.828 kb on - strand, within HMPREF1058_RS09735 at 807.830 kb on - strand, within HMPREF1058_RS09735 at 807.835 kb on - strand, within HMPREF1058_RS09735 at 807.850 kb on + strand, within HMPREF1058_RS09735 at 807.851 kb on - strand, within HMPREF1058_RS09735 at 807.927 kb on - strand, within HMPREF1058_RS09735 at 808.048 kb on + strand, within HMPREF1058_RS09735 at 808.048 kb on + strand, within HMPREF1058_RS09735 at 808.051 kb on + strand, within HMPREF1058_RS09735 at 808.085 kb on + strand, within HMPREF1058_RS09735 at 808.088 kb on - strand, within HMPREF1058_RS09735 at 808.088 kb on - strand, within HMPREF1058_RS09735 at 808.169 kb on - strand, within HMPREF1058_RS09735 at 808.249 kb on + strand, within HMPREF1058_RS09735 at 808.249 kb on + strand, within HMPREF1058_RS09735 at 808.250 kb on - strand, within HMPREF1058_RS09735 at 808.388 kb on + strand, within HMPREF1058_RS09735 at 808.388 kb on + strand, within HMPREF1058_RS09735 at 808.430 kb on - strand, within HMPREF1058_RS09735 at 808.450 kb on + strand, within HMPREF1058_RS09735 at 808.465 kb on + strand, within HMPREF1058_RS09735 at 808.465 kb on + strand, within HMPREF1058_RS09735 at 808.524 kb on + strand, within HMPREF1058_RS09735 at 808.663 kb on - strand at 808.729 kb on + strand at 808.730 kb on - strand at 808.730 kb on - strand at 808.730 kb on - strand at 808.757 kb on + strand at 808.757 kb on + strand at 808.758 kb on - strand at 808.758 kb on - strand at 808.766 kb on + strand at 808.766 kb on + strand at 808.858 kb on - strand, within HMPREF1058_RS09730 at 808.858 kb on - strand, within HMPREF1058_RS09730 at 808.933 kb on + strand, within HMPREF1058_RS09730 at 808.934 kb on - strand, within HMPREF1058_RS09730 at 808.956 kb on + strand, within HMPREF1058_RS09730 at 808.967 kb on + strand, within HMPREF1058_RS09730 at 808.988 kb on + strand, within HMPREF1058_RS09730 at 808.989 kb on - strand, within HMPREF1058_RS09730 at 808.990 kb on + strand, within HMPREF1058_RS09730 at 809.032 kb on + strand, within HMPREF1058_RS09730 at 809.033 kb on - strand, within HMPREF1058_RS09730 at 809.066 kb on - strand, within HMPREF1058_RS09730 at 809.098 kb on - strand, within HMPREF1058_RS09730 at 809.098 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.106 kb on - strand, within HMPREF1058_RS09730 at 809.127 kb on + strand, within HMPREF1058_RS09730 at 809.127 kb on + strand, within HMPREF1058_RS09730 at 809.174 kb on - strand, within HMPREF1058_RS09730 at 809.183 kb on + strand, within HMPREF1058_RS09730 at 809.185 kb on + strand, within HMPREF1058_RS09730 at 809.186 kb on - strand, within HMPREF1058_RS09730 at 809.187 kb on + strand, within HMPREF1058_RS09730 at 809.187 kb on + strand, within HMPREF1058_RS09730 at 809.344 kb on + strand, within HMPREF1058_RS09730 at 809.419 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.424 kb on + strand at 809.425 kb on - strand at 809.429 kb on - strand at 809.429 kb on - strand at 809.429 kb on - strand at 809.477 kb on - strand at 809.490 kb on + strand at 809.490 kb on + strand at 809.491 kb on - strand at 809.491 kb on - strand at 809.513 kb on + strand at 809.580 kb on + strand at 809.582 kb on + strand at 809.583 kb on - strand at 809.583 kb on - strand at 809.597 kb on - strand at 809.597 kb on - strand at 809.617 kb on + strand, within HMPREF1058_RS09725 at 809.618 kb on - strand, within HMPREF1058_RS09725 at 809.623 kb on - strand, within HMPREF1058_RS09725
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 806,766 - HMPREF1058_RS09740 0.17 -1.4 806,766 - HMPREF1058_RS09740 0.17 +0.2 806,783 - HMPREF1058_RS09740 0.19 -0.6 806,797 + HMPREF1058_RS09740 0.20 -1.9 806,797 + HMPREF1058_RS09740 0.20 -0.0 806,883 + HMPREF1058_RS09740 0.28 -0.6 806,949 - HMPREF1058_RS09740 0.34 -0.1 806,967 + HMPREF1058_RS09740 0.35 -0.7 806,970 - HMPREF1058_RS09740 0.35 -2.0 807,021 - HMPREF1058_RS09740 0.40 -1.0 807,046 + HMPREF1058_RS09740 0.42 -0.9 807,047 - HMPREF1058_RS09740 0.42 +1.7 807,050 + HMPREF1058_RS09740 0.43 +0.1 807,101 - HMPREF1058_RS09740 0.47 +0.0 807,101 - HMPREF1058_RS09740 0.47 -2.4 807,101 - HMPREF1058_RS09740 0.47 -0.3 807,101 - HMPREF1058_RS09740 0.47 +1.5 807,129 + HMPREF1058_RS09740 0.50 -1.9 807,176 + HMPREF1058_RS09740 0.54 -1.3 807,176 + HMPREF1058_RS09740 0.54 +2.2 807,177 - HMPREF1058_RS09740 0.54 -0.2 807,279 + HMPREF1058_RS09740 0.63 +0.4 807,279 + HMPREF1058_RS09740 0.63 -0.9 807,296 + HMPREF1058_RS09740 0.65 -0.3 807,297 - HMPREF1058_RS09740 0.65 -0.3 807,400 + HMPREF1058_RS09740 0.74 +1.2 807,401 - HMPREF1058_RS09740 0.74 +0.3 807,433 - HMPREF1058_RS09740 0.77 +1.1 807,477 + HMPREF1058_RS09740 0.81 -0.3 807,485 + HMPREF1058_RS09740 0.82 -0.3 807,493 + HMPREF1058_RS09740 0.82 +0.4 807,494 - HMPREF1058_RS09740 0.82 -1.3 807,525 + HMPREF1058_RS09740 0.85 -0.3 807,525 + HMPREF1058_RS09740 0.85 -0.5 807,595 - -0.6 807,648 - +1.3 807,651 + +0.3 807,783 - HMPREF1058_RS09735 0.12 -0.3 807,828 - HMPREF1058_RS09735 0.16 -1.9 807,830 - HMPREF1058_RS09735 0.16 -1.8 807,835 - HMPREF1058_RS09735 0.17 -0.1 807,850 + HMPREF1058_RS09735 0.18 -1.5 807,851 - HMPREF1058_RS09735 0.18 -2.3 807,927 - HMPREF1058_RS09735 0.26 -2.5 808,048 + HMPREF1058_RS09735 0.38 -6.8 808,048 + HMPREF1058_RS09735 0.38 -3.1 808,051 + HMPREF1058_RS09735 0.38 -2.3 808,085 + HMPREF1058_RS09735 0.41 -5.1 808,088 - HMPREF1058_RS09735 0.42 -1.3 808,088 - HMPREF1058_RS09735 0.42 -2.5 808,169 - HMPREF1058_RS09735 0.50 -2.9 808,249 + HMPREF1058_RS09735 0.58 -1.6 808,249 + HMPREF1058_RS09735 0.58 -2.6 808,250 - HMPREF1058_RS09735 0.58 -5.5 808,388 + HMPREF1058_RS09735 0.71 -4.1 808,388 + HMPREF1058_RS09735 0.71 -0.3 808,430 - HMPREF1058_RS09735 0.75 -1.0 808,450 + HMPREF1058_RS09735 0.77 -0.6 808,465 + HMPREF1058_RS09735 0.79 -3.3 808,465 + HMPREF1058_RS09735 0.79 -3.6 808,524 + HMPREF1058_RS09735 0.85 -3.3 808,663 - -3.6 808,729 + -3.1 808,730 - -0.3 808,730 - -1.9 808,730 - -2.3 808,757 + -4.6 808,757 + -0.3 808,758 - -0.3 808,758 - +0.5 808,766 + -2.6 808,766 + -1.3 808,858 - HMPREF1058_RS09730 0.21 -3.3 808,858 - HMPREF1058_RS09730 0.21 -0.3 808,933 + HMPREF1058_RS09730 0.30 -3.1 808,934 - HMPREF1058_RS09730 0.30 -0.3 808,956 + HMPREF1058_RS09730 0.33 -4.6 808,967 + HMPREF1058_RS09730 0.34 -1.9 808,988 + HMPREF1058_RS09730 0.37 -2.9 808,989 - HMPREF1058_RS09730 0.37 -2.3 808,990 + HMPREF1058_RS09730 0.37 -3.3 809,032 + HMPREF1058_RS09730 0.42 -3.5 809,033 - HMPREF1058_RS09730 0.43 -1.5 809,066 - HMPREF1058_RS09730 0.47 -3.5 809,098 - HMPREF1058_RS09730 0.51 -0.8 809,098 - HMPREF1058_RS09730 0.51 -0.1 809,106 - HMPREF1058_RS09730 0.52 -2.3 809,106 - HMPREF1058_RS09730 0.52 -2.5 809,106 - HMPREF1058_RS09730 0.52 -2.3 809,106 - HMPREF1058_RS09730 0.52 +1.6 809,106 - HMPREF1058_RS09730 0.52 -0.3 809,106 - HMPREF1058_RS09730 0.52 -1.3 809,127 + HMPREF1058_RS09730 0.54 -3.3 809,127 + HMPREF1058_RS09730 0.54 -2.3 809,174 - HMPREF1058_RS09730 0.60 +0.7 809,183 + HMPREF1058_RS09730 0.61 -3.6 809,185 + HMPREF1058_RS09730 0.62 -2.6 809,186 - HMPREF1058_RS09730 0.62 -2.0 809,187 + HMPREF1058_RS09730 0.62 -3.1 809,187 + HMPREF1058_RS09730 0.62 -2.3 809,344 + HMPREF1058_RS09730 0.82 -1.3 809,419 + -5.2 809,424 + -0.9 809,424 + -3.1 809,424 + -3.6 809,424 + -2.3 809,424 + -2.6 809,424 + -3.1 809,425 - -2.1 809,429 - -0.3 809,429 - -1.9 809,429 - -3.0 809,477 - -2.0 809,490 + -0.3 809,490 + -2.6 809,491 - -0.3 809,491 - -0.7 809,513 + -0.3 809,580 + -1.9 809,582 + -1.3 809,583 - -0.9 809,583 - -3.3 809,597 - +0.5 809,597 - -0.5 809,617 + HMPREF1058_RS09725 0.11 -0.3 809,618 - HMPREF1058_RS09725 0.11 -1.2 809,623 - HMPREF1058_RS09725 0.12 +0.6
Or see this region's nucleotide sequence