Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09630 and HMPREF1058_RS09625 are separated by 11 nucleotides HMPREF1058_RS09625 and HMPREF1058_RS09620 are separated by 33 nucleotides HMPREF1058_RS09620 and HMPREF1058_RS09615 are separated by 127 nucleotides
HMPREF1058_RS09630: HMPREF1058_RS09630 - outer membrane protein assembly factor BamA, at 831,561 to 834,203
_RS09630
HMPREF1058_RS09625: HMPREF1058_RS09625 - isoprenyl transferase, at 834,215 to 834,946
_RS09625
HMPREF1058_RS09620: HMPREF1058_RS09620 - hypothetical protein, at 834,980 to 836,377
_RS09620
HMPREF1058_RS09615: HMPREF1058_RS09615 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 836,505 to 837,557
_RS09615
Position (kb) 834
835
836
837 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 834.219 kb on - strand at 834.219 kb on - strand at 834.962 kb on - strand at 835.007 kb on - strand at 835.049 kb on - strand at 835.049 kb on - strand at 835.081 kb on - strand at 835.108 kb on - strand at 835.141 kb on - strand, within HMPREF1058_RS09620 at 835.246 kb on - strand, within HMPREF1058_RS09620 at 835.261 kb on - strand, within HMPREF1058_RS09620 at 835.277 kb on - strand, within HMPREF1058_RS09620 at 835.319 kb on - strand, within HMPREF1058_RS09620 at 835.444 kb on - strand, within HMPREF1058_RS09620 at 836.398 kb on - strand at 836.459 kb on - strand at 836.464 kb on - strand at 836.507 kb on - strand at 836.538 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 834,219 - +2.2 834,219 - +1.6 834,962 - +2.2 835,007 - +1.5 835,049 - -3.6 835,049 - -5.2 835,081 - -3.7 835,108 - -4.3 835,141 - HMPREF1058_RS09620 0.12 -5.0 835,246 - HMPREF1058_RS09620 0.19 -2.3 835,261 - HMPREF1058_RS09620 0.20 -3.1 835,277 - HMPREF1058_RS09620 0.21 -3.5 835,319 - HMPREF1058_RS09620 0.24 -2.3 835,444 - HMPREF1058_RS09620 0.33 -3.7 836,398 - -0.5 836,459 - -0.3 836,464 - -1.3 836,507 - +1.0 836,538 + -0.3
Or see this region's nucleotide sequence