Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09600 and HMPREF1058_RS09595 are separated by 99 nucleotides HMPREF1058_RS09595 and HMPREF1058_RS09590 are separated by 97 nucleotides HMPREF1058_RS09590 and HMPREF1058_RS09585 are separated by 14 nucleotides
HMPREF1058_RS09600: HMPREF1058_RS09600 - ComF family protein, at 838,906 to 839,601
_RS09600
HMPREF1058_RS09595: HMPREF1058_RS09595 - orotate phosphoribosyltransferase, at 839,701 to 840,339
_RS09595
HMPREF1058_RS09590: HMPREF1058_RS09590 - hypothetical protein, at 840,437 to 840,841
_RS09590
HMPREF1058_RS09585: HMPREF1058_RS09585 - argininosuccinate lyase, at 840,856 to 842,196
_RS09585
Position (kb) 840
841 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 839.514 kb on + strand, within HMPREF1058_RS09600 at 839.558 kb on + strand at 839.574 kb on + strand at 840.145 kb on - strand, within HMPREF1058_RS09595 at 840.337 kb on + strand at 840.359 kb on + strand at 840.360 kb on - strand at 840.361 kb on + strand at 840.464 kb on + strand at 840.465 kb on - strand at 840.465 kb on - strand at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.510 kb on + strand, within HMPREF1058_RS09590 at 840.528 kb on + strand, within HMPREF1058_RS09590 at 840.553 kb on - strand, within HMPREF1058_RS09590 at 840.559 kb on + strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.640 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.757 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.855 kb on + strand at 840.903 kb on - strand at 840.944 kb on - strand at 840.962 kb on + strand at 840.962 kb on + strand at 840.982 kb on - strand at 840.999 kb on + strand, within HMPREF1058_RS09585 at 841.035 kb on - strand, within HMPREF1058_RS09585 at 841.046 kb on + strand, within HMPREF1058_RS09585 at 841.053 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.058 kb on - strand, within HMPREF1058_RS09585 at 841.109 kb on + strand, within HMPREF1058_RS09585 at 841.110 kb on - strand, within HMPREF1058_RS09585 at 841.121 kb on + strand, within HMPREF1058_RS09585 at 841.219 kb on - strand, within HMPREF1058_RS09585 at 841.290 kb on + strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.526 kb on - strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.558 kb on - strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.696 kb on - strand, within HMPREF1058_RS09585 at 841.697 kb on + strand, within HMPREF1058_RS09585 at 841.832 kb on + strand, within HMPREF1058_RS09585
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 839,514 + HMPREF1058_RS09600 0.87 -0.1 839,558 + -0.7 839,574 + -1.0 840,145 - HMPREF1058_RS09595 0.69 -0.3 840,337 + -1.7 840,359 + -2.0 840,360 - -5.8 840,361 + -3.0 840,464 + -2.6 840,465 - -0.3 840,465 - -3.3 840,497 - HMPREF1058_RS09590 0.15 -0.3 840,497 - HMPREF1058_RS09590 0.15 -4.8 840,510 + HMPREF1058_RS09590 0.18 -2.5 840,528 + HMPREF1058_RS09590 0.22 -3.3 840,553 - HMPREF1058_RS09590 0.29 -1.3 840,559 + HMPREF1058_RS09590 0.30 -2.6 840,595 - HMPREF1058_RS09590 0.39 -4.5 840,595 - HMPREF1058_RS09590 0.39 -0.3 840,640 + HMPREF1058_RS09590 0.50 -2.0 840,739 + HMPREF1058_RS09590 0.75 -1.6 840,739 + HMPREF1058_RS09590 0.75 -3.1 840,757 + HMPREF1058_RS09590 0.79 -3.7 840,763 + HMPREF1058_RS09590 0.80 -1.1 840,763 + HMPREF1058_RS09590 0.80 -2.4 840,763 + HMPREF1058_RS09590 0.80 -3.5 840,855 + -3.8 840,903 - -2.6 840,944 - -5.1 840,962 + -1.3 840,962 + -5.4 840,982 - -3.6 840,999 + HMPREF1058_RS09585 0.11 -6.4 841,035 - HMPREF1058_RS09585 0.13 -2.6 841,046 + HMPREF1058_RS09585 0.14 -2.9 841,053 + HMPREF1058_RS09585 0.15 -1.3 841,057 + HMPREF1058_RS09585 0.15 -5.3 841,057 + HMPREF1058_RS09585 0.15 -5.3 841,057 + HMPREF1058_RS09585 0.15 -3.1 841,057 + HMPREF1058_RS09585 0.15 -4.9 841,058 - HMPREF1058_RS09585 0.15 -0.3 841,109 + HMPREF1058_RS09585 0.19 -2.6 841,110 - HMPREF1058_RS09585 0.19 -3.6 841,121 + HMPREF1058_RS09585 0.20 -5.3 841,219 - HMPREF1058_RS09585 0.27 -3.1 841,290 + HMPREF1058_RS09585 0.32 -1.9 841,291 - HMPREF1058_RS09585 0.32 -4.9 841,291 - HMPREF1058_RS09585 0.32 -5.9 841,294 + HMPREF1058_RS09585 0.33 -5.1 841,294 + HMPREF1058_RS09585 0.33 -0.3 841,295 - HMPREF1058_RS09585 0.33 -5.2 841,295 - HMPREF1058_RS09585 0.33 -2.9 841,295 - HMPREF1058_RS09585 0.33 -4.7 841,296 + HMPREF1058_RS09585 0.33 -5.4 841,296 + HMPREF1058_RS09585 0.33 -4.3 841,296 + HMPREF1058_RS09585 0.33 -4.2 841,297 - HMPREF1058_RS09585 0.33 -2.3 841,297 - HMPREF1058_RS09585 0.33 -6.0 841,526 - HMPREF1058_RS09585 0.50 -5.0 841,527 + HMPREF1058_RS09585 0.50 -2.3 841,527 + HMPREF1058_RS09585 0.50 -7.0 841,527 + HMPREF1058_RS09585 0.50 -3.7 841,528 - HMPREF1058_RS09585 0.50 -3.5 841,528 - HMPREF1058_RS09585 0.50 -3.5 841,537 + HMPREF1058_RS09585 0.51 -4.0 841,537 + HMPREF1058_RS09585 0.51 -4.2 841,558 - HMPREF1058_RS09585 0.52 -3.5 841,632 + HMPREF1058_RS09585 0.58 -1.9 841,632 + HMPREF1058_RS09585 0.58 -2.6 841,696 - HMPREF1058_RS09585 0.63 -2.6 841,697 + HMPREF1058_RS09585 0.63 -2.6 841,832 + HMPREF1058_RS09585 0.73 -4.7
Or see this region's nucleotide sequence