Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09010 and HMPREF1058_RS09005 are separated by 204 nucleotides HMPREF1058_RS09005 and HMPREF1058_RS09000 are separated by 28 nucleotides HMPREF1058_RS09000 and HMPREF1058_RS08995 are separated by 17 nucleotides
HMPREF1058_RS09010: HMPREF1058_RS09010 - GH92 family glycosyl hydrolase, at 963,834 to 966,056
_RS09010
HMPREF1058_RS09005: HMPREF1058_RS09005 - RNA polymerase sigma-70 factor, at 966,261 to 966,836
_RS09005
HMPREF1058_RS09000: HMPREF1058_RS09000 - FecR domain-containing protein, at 966,865 to 967,857
_RS09000
HMPREF1058_RS08995: HMPREF1058_RS08995 - GH92 family glycosyl hydrolase, at 967,875 to 970,157
_RS08995
Position (kb) 966
967
968 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 965.897 kb on - strand at 965.929 kb on - strand at 965.948 kb on - strand at 965.973 kb on + strand at 965.973 kb on + strand at 965.973 kb on + strand at 965.976 kb on - strand at 966.050 kb on + strand at 966.054 kb on + strand at 966.054 kb on + strand at 966.061 kb on + strand at 966.062 kb on - strand at 966.062 kb on - strand at 966.062 kb on - strand at 966.078 kb on + strand at 966.116 kb on + strand at 966.241 kb on - strand at 966.256 kb on - strand at 966.285 kb on + strand at 966.286 kb on - strand at 966.286 kb on - strand at 966.314 kb on + strand at 966.455 kb on - strand, within HMPREF1058_RS09005 at 966.455 kb on - strand, within HMPREF1058_RS09005 at 966.455 kb on - strand, within HMPREF1058_RS09005 at 966.467 kb on - strand, within HMPREF1058_RS09005 at 966.638 kb on + strand, within HMPREF1058_RS09005 at 966.644 kb on + strand, within HMPREF1058_RS09005 at 966.722 kb on + strand, within HMPREF1058_RS09005 at 966.737 kb on + strand, within HMPREF1058_RS09005 at 966.737 kb on + strand, within HMPREF1058_RS09005 at 966.737 kb on + strand, within HMPREF1058_RS09005 at 966.738 kb on - strand, within HMPREF1058_RS09005 at 966.738 kb on - strand, within HMPREF1058_RS09005 at 966.742 kb on - strand, within HMPREF1058_RS09005 at 966.781 kb on + strand at 966.782 kb on - strand at 966.785 kb on - strand at 966.827 kb on + strand at 966.849 kb on - strand at 966.892 kb on - strand at 966.893 kb on + strand at 966.893 kb on + strand at 966.894 kb on - strand at 966.899 kb on - strand at 967.114 kb on - strand, within HMPREF1058_RS09000 at 967.114 kb on - strand, within HMPREF1058_RS09000 at 967.269 kb on - strand, within HMPREF1058_RS09000 at 967.331 kb on + strand, within HMPREF1058_RS09000 at 967.331 kb on + strand, within HMPREF1058_RS09000 at 967.332 kb on - strand, within HMPREF1058_RS09000 at 967.352 kb on - strand, within HMPREF1058_RS09000 at 967.438 kb on - strand, within HMPREF1058_RS09000 at 967.438 kb on - strand, within HMPREF1058_RS09000 at 967.439 kb on + strand at 967.557 kb on - strand, within HMPREF1058_RS09000 at 967.651 kb on - strand, within HMPREF1058_RS09000 at 967.716 kb on - strand, within HMPREF1058_RS09000 at 967.716 kb on - strand, within HMPREF1058_RS09000 at 967.716 kb on - strand, within HMPREF1058_RS09000 at 967.722 kb on + strand, within HMPREF1058_RS09000 at 967.759 kb on - strand at 967.761 kb on + strand at 967.761 kb on + strand at 967.762 kb on - strand at 967.763 kb on + strand at 967.763 kb on + strand at 967.764 kb on - strand at 967.810 kb on - strand at 967.836 kb on + strand at 967.962 kb on + strand at 967.972 kb on - strand at 967.985 kb on + strand at 968.009 kb on + strand at 968.098 kb on - strand at 968.101 kb on - strand at 968.111 kb on + strand, within HMPREF1058_RS08995 at 968.271 kb on + strand, within HMPREF1058_RS08995 at 968.289 kb on + strand, within HMPREF1058_RS08995 at 968.306 kb on + strand, within HMPREF1058_RS08995 at 968.311 kb on - strand, within HMPREF1058_RS08995 at 968.311 kb on - strand, within HMPREF1058_RS08995 at 968.378 kb on + strand, within HMPREF1058_RS08995 at 968.378 kb on + strand, within HMPREF1058_RS08995 at 968.378 kb on + strand, within HMPREF1058_RS08995 at 968.379 kb on - strand, within HMPREF1058_RS08995 at 968.411 kb on + strand, within HMPREF1058_RS08995 at 968.411 kb on + strand, within HMPREF1058_RS08995 at 968.411 kb on + strand, within HMPREF1058_RS08995 at 968.415 kb on - strand, within HMPREF1058_RS08995 at 968.462 kb on + strand, within HMPREF1058_RS08995 at 968.462 kb on + strand, within HMPREF1058_RS08995 at 968.547 kb on - strand, within HMPREF1058_RS08995 at 968.550 kb on + strand, within HMPREF1058_RS08995 at 968.551 kb on - strand, within HMPREF1058_RS08995 at 968.552 kb on + strand, within HMPREF1058_RS08995 at 968.600 kb on - strand, within HMPREF1058_RS08995 at 968.604 kb on - strand, within HMPREF1058_RS08995 at 968.604 kb on - strand, within HMPREF1058_RS08995 at 968.661 kb on - strand, within HMPREF1058_RS08995 at 968.689 kb on - strand, within HMPREF1058_RS08995 at 968.828 kb on + strand, within HMPREF1058_RS08995
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 965,897 - -1.3 965,929 - -1.9 965,948 - -2.6 965,973 + -0.3 965,973 + -1.3 965,973 + -1.0 965,976 - -1.2 966,050 + -0.6 966,054 + -0.6 966,054 + +0.1 966,061 + +0.8 966,062 - -2.1 966,062 - -1.5 966,062 - +2.5 966,078 + +0.4 966,116 + +1.0 966,241 - -1.4 966,256 - -1.8 966,285 + +0.2 966,286 - -1.9 966,286 - -2.1 966,314 + +1.6 966,455 - HMPREF1058_RS09005 0.34 +0.5 966,455 - HMPREF1058_RS09005 0.34 -1.3 966,455 - HMPREF1058_RS09005 0.34 -0.1 966,467 - HMPREF1058_RS09005 0.36 -1.4 966,638 + HMPREF1058_RS09005 0.65 +1.6 966,644 + HMPREF1058_RS09005 0.66 -2.5 966,722 + HMPREF1058_RS09005 0.80 +0.1 966,737 + HMPREF1058_RS09005 0.83 -1.1 966,737 + HMPREF1058_RS09005 0.83 +1.4 966,737 + HMPREF1058_RS09005 0.83 +2.0 966,738 - HMPREF1058_RS09005 0.83 -1.3 966,738 - HMPREF1058_RS09005 0.83 -2.9 966,742 - HMPREF1058_RS09005 0.84 -1.3 966,781 + +0.8 966,782 - +0.0 966,785 - +1.3 966,827 + +0.9 966,849 - -0.3 966,892 - -4.5 966,893 + -1.1 966,893 + +0.9 966,894 - -4.0 966,899 - -0.3 967,114 - HMPREF1058_RS09000 0.25 -2.6 967,114 - HMPREF1058_RS09000 0.25 -1.7 967,269 - HMPREF1058_RS09000 0.41 -1.9 967,331 + HMPREF1058_RS09000 0.47 +0.5 967,331 + HMPREF1058_RS09000 0.47 -0.3 967,332 - HMPREF1058_RS09000 0.47 -2.9 967,352 - HMPREF1058_RS09000 0.49 -3.3 967,438 - HMPREF1058_RS09000 0.58 -4.3 967,438 - HMPREF1058_RS09000 0.58 -1.3 967,439 + -0.3 967,557 - HMPREF1058_RS09000 0.70 -5.5 967,651 - HMPREF1058_RS09000 0.79 -3.1 967,716 - HMPREF1058_RS09000 0.86 -4.3 967,716 - HMPREF1058_RS09000 0.86 -2.9 967,716 - HMPREF1058_RS09000 0.86 -5.8 967,722 + HMPREF1058_RS09000 0.86 -0.3 967,759 - -3.9 967,761 + -2.6 967,761 + -0.9 967,762 - -2.3 967,763 + +1.1 967,763 + -0.3 967,764 - -1.9 967,810 - -3.3 967,836 + -0.4 967,962 + -1.7 967,972 - -2.9 967,985 + -2.9 968,009 + +0.7 968,098 - -3.5 968,101 - -3.5 968,111 + HMPREF1058_RS08995 0.10 -1.9 968,271 + HMPREF1058_RS08995 0.17 -1.3 968,289 + HMPREF1058_RS08995 0.18 -1.0 968,306 + HMPREF1058_RS08995 0.19 -0.9 968,311 - HMPREF1058_RS08995 0.19 -3.3 968,311 - HMPREF1058_RS08995 0.19 -5.6 968,378 + HMPREF1058_RS08995 0.22 -1.6 968,378 + HMPREF1058_RS08995 0.22 -0.5 968,378 + HMPREF1058_RS08995 0.22 -2.0 968,379 - HMPREF1058_RS08995 0.22 -2.3 968,411 + HMPREF1058_RS08995 0.23 -1.6 968,411 + HMPREF1058_RS08995 0.23 -2.9 968,411 + HMPREF1058_RS08995 0.23 -0.9 968,415 - HMPREF1058_RS08995 0.24 -2.5 968,462 + HMPREF1058_RS08995 0.26 -2.0 968,462 + HMPREF1058_RS08995 0.26 -1.0 968,547 - HMPREF1058_RS08995 0.29 -4.5 968,550 + HMPREF1058_RS08995 0.30 -1.1 968,551 - HMPREF1058_RS08995 0.30 -0.3 968,552 + HMPREF1058_RS08995 0.30 +0.7 968,600 - HMPREF1058_RS08995 0.32 -1.9 968,604 - HMPREF1058_RS08995 0.32 -4.7 968,604 - HMPREF1058_RS08995 0.32 -0.3 968,661 - HMPREF1058_RS08995 0.34 -3.8 968,689 - HMPREF1058_RS08995 0.36 -2.9 968,828 + HMPREF1058_RS08995 0.42 +1.3
Or see this region's nucleotide sequence