Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08530 and HMPREF1058_RS08525 are separated by 73 nucleotides HMPREF1058_RS08525 and HMPREF1058_RS08520 are separated by 36 nucleotides HMPREF1058_RS08520 and HMPREF1058_RS08515 are separated by 131 nucleotides HMPREF1058_RS08515 and HMPREF1058_RS08510 are separated by 65 nucleotides
HMPREF1058_RS08530: HMPREF1058_RS08530 - glycosyltransferase, at 1,121,122 to 1,122,111
_RS08530
HMPREF1058_RS08525: HMPREF1058_RS08525 - DNA repair protein RadC, at 1,122,185 to 1,122,874
_RS08525
HMPREF1058_RS08520: HMPREF1058_RS08520 - DUF59 domain-containing protein, at 1,122,911 to 1,123,231
_RS08520
HMPREF1058_RS08515: HMPREF1058_RS08515 - UDP-2,3-diacylglucosamine diphosphatase, at 1,123,363 to 1,124,130
_RS08515
HMPREF1058_RS08510: HMPREF1058_RS08510 - acetate kinase, at 1,124,196 to 1,125,392
_RS08510
Position (kb) 1122
1123
1124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1122.204 kb on + strand at 1122.204 kb on + strand at 1122.205 kb on - strand at 1122.290 kb on - strand, within HMPREF1058_RS08525 at 1122.361 kb on + strand, within HMPREF1058_RS08525 at 1122.361 kb on + strand, within HMPREF1058_RS08525 at 1122.364 kb on + strand, within HMPREF1058_RS08525 at 1122.365 kb on - strand, within HMPREF1058_RS08525 at 1122.365 kb on - strand, within HMPREF1058_RS08525 at 1122.421 kb on - strand, within HMPREF1058_RS08525 at 1122.436 kb on + strand, within HMPREF1058_RS08525 at 1122.500 kb on - strand, within HMPREF1058_RS08525 at 1122.500 kb on - strand, within HMPREF1058_RS08525 at 1122.533 kb on + strand, within HMPREF1058_RS08525 at 1122.607 kb on - strand, within HMPREF1058_RS08525 at 1122.624 kb on + strand, within HMPREF1058_RS08525 at 1122.625 kb on - strand, within HMPREF1058_RS08525 at 1122.646 kb on + strand, within HMPREF1058_RS08525 at 1122.646 kb on + strand, within HMPREF1058_RS08525 at 1122.647 kb on - strand, within HMPREF1058_RS08525 at 1122.782 kb on - strand, within HMPREF1058_RS08525 at 1122.802 kb on + strand, within HMPREF1058_RS08525 at 1122.802 kb on + strand, within HMPREF1058_RS08525 at 1122.802 kb on + strand, within HMPREF1058_RS08525 at 1122.803 kb on - strand, within HMPREF1058_RS08525 at 1122.803 kb on - strand, within HMPREF1058_RS08525 at 1122.805 kb on - strand, within HMPREF1058_RS08525 at 1122.824 kb on - strand at 1122.847 kb on + strand at 1122.851 kb on + strand at 1122.851 kb on + strand at 1122.910 kb on + strand at 1122.910 kb on + strand at 1122.951 kb on + strand, within HMPREF1058_RS08520 at 1122.971 kb on + strand, within HMPREF1058_RS08520 at 1122.996 kb on + strand, within HMPREF1058_RS08520 at 1123.053 kb on + strand, within HMPREF1058_RS08520 at 1123.053 kb on + strand, within HMPREF1058_RS08520 at 1123.189 kb on + strand, within HMPREF1058_RS08520 at 1123.277 kb on + strand at 1123.283 kb on + strand at 1123.283 kb on + strand at 1123.348 kb on + strand at 1124.101 kb on + strand at 1124.101 kb on + strand at 1124.141 kb on + strand at 1124.141 kb on + strand at 1124.176 kb on + strand at 1124.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 1,122,204 + -0.0 1,122,204 + +1.6 1,122,205 - -1.3 1,122,290 - HMPREF1058_RS08525 0.15 -0.3 1,122,361 + HMPREF1058_RS08525 0.26 +0.3 1,122,361 + HMPREF1058_RS08525 0.26 +1.3 1,122,364 + HMPREF1058_RS08525 0.26 -1.4 1,122,365 - HMPREF1058_RS08525 0.26 -0.6 1,122,365 - HMPREF1058_RS08525 0.26 -1.7 1,122,421 - HMPREF1058_RS08525 0.34 -1.0 1,122,436 + HMPREF1058_RS08525 0.36 -0.4 1,122,500 - HMPREF1058_RS08525 0.46 +1.2 1,122,500 - HMPREF1058_RS08525 0.46 -0.3 1,122,533 + HMPREF1058_RS08525 0.50 +0.2 1,122,607 - HMPREF1058_RS08525 0.61 +0.4 1,122,624 + HMPREF1058_RS08525 0.64 -1.8 1,122,625 - HMPREF1058_RS08525 0.64 +1.5 1,122,646 + HMPREF1058_RS08525 0.67 +0.3 1,122,646 + HMPREF1058_RS08525 0.67 +0.4 1,122,647 - HMPREF1058_RS08525 0.67 +0.7 1,122,782 - HMPREF1058_RS08525 0.87 +0.0 1,122,802 + HMPREF1058_RS08525 0.89 +0.4 1,122,802 + HMPREF1058_RS08525 0.89 -0.3 1,122,802 + HMPREF1058_RS08525 0.89 -1.0 1,122,803 - HMPREF1058_RS08525 0.90 +1.1 1,122,803 - HMPREF1058_RS08525 0.90 -0.7 1,122,805 - HMPREF1058_RS08525 0.90 -1.1 1,122,824 - +0.8 1,122,847 + -2.3 1,122,851 + +2.4 1,122,851 + -0.0 1,122,910 + -0.8 1,122,910 + -0.9 1,122,951 + HMPREF1058_RS08520 0.12 -2.8 1,122,971 + HMPREF1058_RS08520 0.19 -2.3 1,122,996 + HMPREF1058_RS08520 0.26 -3.4 1,123,053 + HMPREF1058_RS08520 0.44 -2.6 1,123,053 + HMPREF1058_RS08520 0.44 -3.7 1,123,189 + HMPREF1058_RS08520 0.87 -2.3 1,123,277 + -1.0 1,123,283 + +2.2 1,123,283 + +0.3 1,123,348 + +0.4 1,124,101 + -0.3 1,124,101 + -1.1 1,124,141 + +1.0 1,124,141 + +1.3 1,124,176 + -0.5 1,124,198 - +0.3
Or see this region's nucleotide sequence