Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08030 and HMPREF1058_RS08025 are separated by 242 nucleotides
HMPREF1058_RS08030: HMPREF1058_RS08030 - peptide chain release factor 1, at 70,060 to 71,175
_RS08030
HMPREF1058_RS08025: HMPREF1058_RS08025 - phosphoribosylformylglycinamidine cyclo-ligase, at 71,418 to 72,587
_RS08025
Position (kb) 71
72
73 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 71.252 kb on - strand at 71.259 kb on - strand at 71.330 kb on - strand at 71.334 kb on - strand at 71.343 kb on - strand at 71.405 kb on - strand at 71.558 kb on - strand, within HMPREF1058_RS08025 at 71.583 kb on - strand, within HMPREF1058_RS08025 at 71.583 kb on - strand, within HMPREF1058_RS08025 at 71.587 kb on - strand, within HMPREF1058_RS08025 at 71.881 kb on - strand, within HMPREF1058_RS08025 at 71.906 kb on - strand, within HMPREF1058_RS08025 at 72.005 kb on - strand, within HMPREF1058_RS08025 at 72.005 kb on - strand, within HMPREF1058_RS08025 at 72.009 kb on - strand, within HMPREF1058_RS08025 at 72.034 kb on - strand, within HMPREF1058_RS08025 at 72.034 kb on - strand, within HMPREF1058_RS08025 at 72.112 kb on - strand, within HMPREF1058_RS08025 at 72.112 kb on - strand, within HMPREF1058_RS08025 at 72.253 kb on - strand, within HMPREF1058_RS08025 at 72.258 kb on - strand, within HMPREF1058_RS08025 at 72.258 kb on - strand, within HMPREF1058_RS08025 at 72.291 kb on - strand, within HMPREF1058_RS08025 at 72.367 kb on - strand, within HMPREF1058_RS08025 at 72.414 kb on - strand, within HMPREF1058_RS08025 at 72.597 kb on - strand at 72.631 kb on - strand at 72.631 kb on - strand at 72.698 kb on - strand at 72.698 kb on - strand at 72.726 kb on + strand at 72.758 kb on + strand at 72.758 kb on + strand at 72.758 kb on + strand at 72.762 kb on + strand at 72.762 kb on + strand at 72.781 kb on + strand at 72.786 kb on + strand at 72.791 kb on + strand at 72.796 kb on - strand at 72.798 kb on - strand at 72.802 kb on + strand at 72.803 kb on - strand at 72.818 kb on + strand at 72.821 kb on - strand at 72.846 kb on - strand at 72.886 kb on + strand at 73.018 kb on + strand at 73.018 kb on + strand at 73.061 kb on - strand at 73.080 kb on + strand at 73.081 kb on - strand at 73.238 kb on + strand at 73.239 kb on - strand at 73.239 kb on - strand at 73.291 kb on + strand at 73.357 kb on + strand at 73.506 kb on + strand at 73.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 71,252 - -1.3 71,259 - +0.2 71,330 - +0.0 71,334 - +1.3 71,343 - -0.1 71,405 - +1.1 71,558 - HMPREF1058_RS08025 0.12 -2.7 71,583 - HMPREF1058_RS08025 0.14 -1.1 71,583 - HMPREF1058_RS08025 0.14 -2.9 71,587 - HMPREF1058_RS08025 0.14 -2.1 71,881 - HMPREF1058_RS08025 0.40 -3.1 71,906 - HMPREF1058_RS08025 0.42 -5.3 72,005 - HMPREF1058_RS08025 0.50 -4.2 72,005 - HMPREF1058_RS08025 0.50 -0.1 72,009 - HMPREF1058_RS08025 0.51 -2.7 72,034 - HMPREF1058_RS08025 0.53 -3.5 72,034 - HMPREF1058_RS08025 0.53 -3.9 72,112 - HMPREF1058_RS08025 0.59 -1.7 72,112 - HMPREF1058_RS08025 0.59 -2.7 72,253 - HMPREF1058_RS08025 0.71 -3.7 72,258 - HMPREF1058_RS08025 0.72 -2.7 72,258 - HMPREF1058_RS08025 0.72 -2.9 72,291 - HMPREF1058_RS08025 0.75 -2.4 72,367 - HMPREF1058_RS08025 0.81 -4.8 72,414 - HMPREF1058_RS08025 0.85 -4.9 72,597 - -2.7 72,631 - -2.4 72,631 - +0.2 72,698 - +0.9 72,698 - -1.7 72,726 + +0.0 72,758 + -1.7 72,758 + -2.1 72,758 + -0.6 72,762 + -2.9 72,762 + -0.7 72,781 + -0.8 72,786 + +2.9 72,791 + -0.0 72,796 - +0.2 72,798 - -0.7 72,802 + -0.5 72,803 - -0.1 72,818 + +1.5 72,821 - -2.1 72,846 - -1.6 72,886 + -0.7 73,018 + -0.1 73,018 + +1.2 73,061 - +1.7 73,080 + +1.0 73,081 - -1.1 73,238 + +0.7 73,239 - +0.7 73,239 - -1.1 73,291 + +0.1 73,357 + -0.1 73,506 + +0.5 73,539 - +1.1
Or see this region's nucleotide sequence