Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07825 and HMPREF1058_RS07820 are separated by 279 nucleotides HMPREF1058_RS07820 and HMPREF1058_RS07815 are separated by 105 nucleotides HMPREF1058_RS07815 and HMPREF1058_RS07810 are separated by 417 nucleotides HMPREF1058_RS07810 and HMPREF1058_RS07805 are separated by 78 nucleotides
HMPREF1058_RS07825: HMPREF1058_RS07825 - DUF4221 family protein, at 122,992 to 124,155
_RS07825
HMPREF1058_RS07820: HMPREF1058_RS07820 - NVEALA domain-containing protein, at 124,435 to 124,671
_RS07820
HMPREF1058_RS07815: HMPREF1058_RS07815 - 6-bladed beta-propeller, at 124,777 to 125,799
_RS07815
HMPREF1058_RS07810: HMPREF1058_RS07810 - NVEALA domain-containing protein, at 126,217 to 126,450
_RS07810
HMPREF1058_RS07805: HMPREF1058_RS07805 - hypothetical protein, at 126,529 to 127,560
_RS07805
Position (kb) 124
125
126 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 123.847 kb on + strand, within HMPREF1058_RS07825 at 123.858 kb on - strand, within HMPREF1058_RS07825 at 123.862 kb on + strand, within HMPREF1058_RS07825 at 123.871 kb on + strand, within HMPREF1058_RS07825 at 123.882 kb on - strand, within HMPREF1058_RS07825 at 123.882 kb on - strand, within HMPREF1058_RS07825 at 123.884 kb on - strand, within HMPREF1058_RS07825 at 123.886 kb on + strand, within HMPREF1058_RS07825 at 123.887 kb on - strand, within HMPREF1058_RS07825 at 123.909 kb on + strand, within HMPREF1058_RS07825 at 123.910 kb on - strand, within HMPREF1058_RS07825 at 123.910 kb on - strand, within HMPREF1058_RS07825 at 123.914 kb on + strand, within HMPREF1058_RS07825 at 124.027 kb on - strand, within HMPREF1058_RS07825 at 124.070 kb on - strand at 124.072 kb on - strand at 124.196 kb on - strand at 124.419 kb on + strand at 124.462 kb on - strand, within HMPREF1058_RS07820 at 124.464 kb on - strand, within HMPREF1058_RS07820 at 124.605 kb on + strand, within HMPREF1058_RS07820 at 124.615 kb on + strand, within HMPREF1058_RS07820 at 124.635 kb on + strand, within HMPREF1058_RS07820 at 124.636 kb on - strand, within HMPREF1058_RS07820 at 124.660 kb on + strand at 124.664 kb on - strand at 124.665 kb on + strand at 124.666 kb on - strand at 124.775 kb on + strand at 124.788 kb on - strand at 124.808 kb on + strand at 124.809 kb on - strand at 124.812 kb on + strand at 124.828 kb on - strand at 124.828 kb on - strand at 124.867 kb on - strand at 124.902 kb on - strand, within HMPREF1058_RS07815 at 124.925 kb on - strand, within HMPREF1058_RS07815 at 124.927 kb on - strand, within HMPREF1058_RS07815 at 124.945 kb on - strand, within HMPREF1058_RS07815 at 124.946 kb on + strand, within HMPREF1058_RS07815 at 124.978 kb on - strand, within HMPREF1058_RS07815 at 124.981 kb on + strand, within HMPREF1058_RS07815 at 124.988 kb on + strand, within HMPREF1058_RS07815 at 125.001 kb on + strand, within HMPREF1058_RS07815 at 125.002 kb on - strand, within HMPREF1058_RS07815 at 125.019 kb on + strand, within HMPREF1058_RS07815 at 125.019 kb on + strand, within HMPREF1058_RS07815 at 125.020 kb on - strand, within HMPREF1058_RS07815 at 125.046 kb on - strand, within HMPREF1058_RS07815 at 125.058 kb on + strand, within HMPREF1058_RS07815 at 125.093 kb on - strand, within HMPREF1058_RS07815 at 125.124 kb on + strand, within HMPREF1058_RS07815 at 125.125 kb on - strand, within HMPREF1058_RS07815 at 125.125 kb on - strand, within HMPREF1058_RS07815 at 125.204 kb on + strand, within HMPREF1058_RS07815 at 125.204 kb on + strand, within HMPREF1058_RS07815 at 125.204 kb on + strand, within HMPREF1058_RS07815 at 125.294 kb on + strand, within HMPREF1058_RS07815 at 125.300 kb on + strand, within HMPREF1058_RS07815 at 125.300 kb on + strand, within HMPREF1058_RS07815 at 125.300 kb on + strand, within HMPREF1058_RS07815 at 125.301 kb on - strand, within HMPREF1058_RS07815 at 125.314 kb on - strand, within HMPREF1058_RS07815 at 125.316 kb on - strand, within HMPREF1058_RS07815 at 125.332 kb on - strand, within HMPREF1058_RS07815 at 125.332 kb on - strand, within HMPREF1058_RS07815 at 125.332 kb on - strand, within HMPREF1058_RS07815 at 125.332 kb on - strand, within HMPREF1058_RS07815 at 125.333 kb on + strand, within HMPREF1058_RS07815 at 125.334 kb on - strand, within HMPREF1058_RS07815 at 125.334 kb on - strand, within HMPREF1058_RS07815 at 125.383 kb on - strand, within HMPREF1058_RS07815 at 125.407 kb on + strand, within HMPREF1058_RS07815 at 125.514 kb on - strand, within HMPREF1058_RS07815 at 125.530 kb on - strand, within HMPREF1058_RS07815 at 125.549 kb on + strand, within HMPREF1058_RS07815 at 125.554 kb on - strand, within HMPREF1058_RS07815 at 125.567 kb on - strand, within HMPREF1058_RS07815 at 125.587 kb on + strand, within HMPREF1058_RS07815 at 125.597 kb on - strand, within HMPREF1058_RS07815 at 125.644 kb on + strand, within HMPREF1058_RS07815 at 125.682 kb on + strand, within HMPREF1058_RS07815 at 125.709 kb on - strand at 125.713 kb on - strand at 125.727 kb on + strand at 125.772 kb on + strand at 125.776 kb on - strand at 125.779 kb on - strand at 125.780 kb on + strand at 125.914 kb on - strand at 125.942 kb on + strand at 125.948 kb on - strand at 125.989 kb on + strand at 125.990 kb on - strand at 125.990 kb on - strand at 126.024 kb on + strand at 126.111 kb on + strand at 126.244 kb on - strand, within HMPREF1058_RS07810 at 126.283 kb on + strand, within HMPREF1058_RS07810 at 126.284 kb on - strand, within HMPREF1058_RS07810 at 126.284 kb on - strand, within HMPREF1058_RS07810 at 126.284 kb on - strand at 126.284 kb on - strand, within HMPREF1058_RS07810 at 126.305 kb on + strand, within HMPREF1058_RS07810 at 126.384 kb on - strand, within HMPREF1058_RS07810 at 126.388 kb on - strand, within HMPREF1058_RS07810 at 126.388 kb on - strand, within HMPREF1058_RS07810 at 126.388 kb on - strand, within HMPREF1058_RS07810 at 126.457 kb on - strand at 126.475 kb on + strand at 126.475 kb on + strand at 126.476 kb on - strand at 126.502 kb on - strand at 126.527 kb on + strand at 126.527 kb on + strand at 126.528 kb on - strand at 126.528 kb on - strand at 126.569 kb on + strand at 126.570 kb on - strand at 126.570 kb on - strand at 126.598 kb on - strand at 126.641 kb on + strand, within HMPREF1058_RS07805 at 126.641 kb on + strand, within HMPREF1058_RS07805 at 126.642 kb on + strand, within HMPREF1058_RS07805 at 126.642 kb on - strand, within HMPREF1058_RS07805 at 126.673 kb on - strand, within HMPREF1058_RS07805 at 126.684 kb on - strand, within HMPREF1058_RS07805 at 126.723 kb on - strand, within HMPREF1058_RS07805 at 126.791 kb on + strand, within HMPREF1058_RS07805 at 126.792 kb on - strand, within HMPREF1058_RS07805 at 126.792 kb on - strand, within HMPREF1058_RS07805
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 123,847 + HMPREF1058_RS07825 0.73 +0.7 123,858 - HMPREF1058_RS07825 0.74 -1.3 123,862 + HMPREF1058_RS07825 0.75 +0.3 123,871 + HMPREF1058_RS07825 0.76 -2.9 123,882 - HMPREF1058_RS07825 0.76 -1.4 123,882 - HMPREF1058_RS07825 0.76 -0.9 123,884 - HMPREF1058_RS07825 0.77 -2.3 123,886 + HMPREF1058_RS07825 0.77 -0.3 123,887 - HMPREF1058_RS07825 0.77 -3.5 123,909 + HMPREF1058_RS07825 0.79 -1.7 123,910 - HMPREF1058_RS07825 0.79 -2.1 123,910 - HMPREF1058_RS07825 0.79 -0.9 123,914 + HMPREF1058_RS07825 0.79 -0.3 124,027 - HMPREF1058_RS07825 0.89 -2.4 124,070 - -0.4 124,072 - -1.1 124,196 - +0.8 124,419 + +0.2 124,462 - HMPREF1058_RS07820 0.11 -1.0 124,464 - HMPREF1058_RS07820 0.12 +0.9 124,605 + HMPREF1058_RS07820 0.72 -1.1 124,615 + HMPREF1058_RS07820 0.76 +1.0 124,635 + HMPREF1058_RS07820 0.84 +2.2 124,636 - HMPREF1058_RS07820 0.85 +0.4 124,660 + +0.7 124,664 - -0.8 124,665 + -0.1 124,666 - +0.0 124,775 + +1.5 124,788 - -1.1 124,808 + -1.1 124,809 - -0.4 124,812 + -1.1 124,828 - -2.9 124,828 - +1.5 124,867 - -0.5 124,902 - HMPREF1058_RS07815 0.12 -2.7 124,925 - HMPREF1058_RS07815 0.14 -1.1 124,927 - HMPREF1058_RS07815 0.15 +2.7 124,945 - HMPREF1058_RS07815 0.16 +1.5 124,946 + HMPREF1058_RS07815 0.17 -2.0 124,978 - HMPREF1058_RS07815 0.20 +1.5 124,981 + HMPREF1058_RS07815 0.20 -0.3 124,988 + HMPREF1058_RS07815 0.21 -2.4 125,001 + HMPREF1058_RS07815 0.22 -1.0 125,002 - HMPREF1058_RS07815 0.22 -1.1 125,019 + HMPREF1058_RS07815 0.24 -0.9 125,019 + HMPREF1058_RS07815 0.24 +0.9 125,020 - HMPREF1058_RS07815 0.24 -1.1 125,046 - HMPREF1058_RS07815 0.26 -2.2 125,058 + HMPREF1058_RS07815 0.27 +0.7 125,093 - HMPREF1058_RS07815 0.31 -2.1 125,124 + HMPREF1058_RS07815 0.34 -1.6 125,125 - HMPREF1058_RS07815 0.34 -2.1 125,125 - HMPREF1058_RS07815 0.34 -1.6 125,204 + HMPREF1058_RS07815 0.42 +0.6 125,204 + HMPREF1058_RS07815 0.42 +0.3 125,204 + HMPREF1058_RS07815 0.42 +0.5 125,294 + HMPREF1058_RS07815 0.51 -2.1 125,300 + HMPREF1058_RS07815 0.51 -0.7 125,300 + HMPREF1058_RS07815 0.51 -1.8 125,300 + HMPREF1058_RS07815 0.51 +0.4 125,301 - HMPREF1058_RS07815 0.51 -2.4 125,314 - HMPREF1058_RS07815 0.52 -1.4 125,316 - HMPREF1058_RS07815 0.53 -2.9 125,332 - HMPREF1058_RS07815 0.54 -0.9 125,332 - HMPREF1058_RS07815 0.54 -2.9 125,332 - HMPREF1058_RS07815 0.54 -0.4 125,332 - HMPREF1058_RS07815 0.54 -3.8 125,333 + HMPREF1058_RS07815 0.54 -1.8 125,334 - HMPREF1058_RS07815 0.54 -1.7 125,334 - HMPREF1058_RS07815 0.54 -1.0 125,383 - HMPREF1058_RS07815 0.59 -1.1 125,407 + HMPREF1058_RS07815 0.62 -1.1 125,514 - HMPREF1058_RS07815 0.72 +0.1 125,530 - HMPREF1058_RS07815 0.74 -0.7 125,549 + HMPREF1058_RS07815 0.75 -0.9 125,554 - HMPREF1058_RS07815 0.76 -1.1 125,567 - HMPREF1058_RS07815 0.77 -0.1 125,587 + HMPREF1058_RS07815 0.79 -1.9 125,597 - HMPREF1058_RS07815 0.80 -0.7 125,644 + HMPREF1058_RS07815 0.85 +0.2 125,682 + HMPREF1058_RS07815 0.88 -1.1 125,709 - -0.1 125,713 - -2.1 125,727 + -1.2 125,772 + -3.1 125,776 - -1.0 125,779 - +0.1 125,780 + +0.2 125,914 - -2.4 125,942 + +0.9 125,948 - -1.3 125,989 + +0.3 125,990 - -0.1 125,990 - -0.1 126,024 + +0.5 126,111 + -0.7 126,244 - HMPREF1058_RS07810 0.12 -0.1 126,283 + HMPREF1058_RS07810 0.28 +0.6 126,284 - HMPREF1058_RS07810 0.29 -1.9 126,284 - HMPREF1058_RS07810 0.29 -2.8 126,284 - -0.1 126,284 - HMPREF1058_RS07810 0.29 -0.1 126,305 + HMPREF1058_RS07810 0.38 +0.6 126,384 - HMPREF1058_RS07810 0.71 +1.4 126,388 - HMPREF1058_RS07810 0.73 -2.7 126,388 - HMPREF1058_RS07810 0.73 -1.5 126,388 - HMPREF1058_RS07810 0.73 -0.7 126,457 - -0.7 126,475 + -1.5 126,475 + -0.4 126,476 - -2.3 126,502 - -1.1 126,527 + -0.7 126,527 + -1.1 126,528 - -1.3 126,528 - -0.8 126,569 + -3.2 126,570 - -0.8 126,570 - +0.2 126,598 - -2.8 126,641 + HMPREF1058_RS07805 0.11 -0.5 126,641 + HMPREF1058_RS07805 0.11 -1.1 126,642 + HMPREF1058_RS07805 0.11 -1.5 126,642 - HMPREF1058_RS07805 0.11 -0.1 126,673 - HMPREF1058_RS07805 0.14 +1.5 126,684 - HMPREF1058_RS07805 0.15 +0.2 126,723 - HMPREF1058_RS07805 0.19 -0.1 126,791 + HMPREF1058_RS07805 0.25 +2.3 126,792 - HMPREF1058_RS07805 0.25 -1.0 126,792 - HMPREF1058_RS07805 0.25 -2.6
Or see this region's nucleotide sequence