Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07785

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07790 and HMPREF1058_RS07785 are separated by 1 nucleotidesHMPREF1058_RS07785 and HMPREF1058_RS07780 are separated by 15 nucleotides HMPREF1058_RS07790: HMPREF1058_RS07790 - hypothetical protein, at 129,138 to 131,063 _RS07790 HMPREF1058_RS07785: HMPREF1058_RS07785 - signal peptidase I, at 131,065 to 131,967 _RS07785 HMPREF1058_RS07780: HMPREF1058_RS07780 - hypothetical protein, at 131,983 to 133,890 _RS07780 Position (kb) 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 130.128 kb on - strand, within HMPREF1058_RS07790at 130.297 kb on - strand, within HMPREF1058_RS07790at 130.311 kb on - strand, within HMPREF1058_RS07790at 130.311 kb on - strand, within HMPREF1058_RS07790at 130.315 kb on + strand, within HMPREF1058_RS07790at 130.349 kb on + strand, within HMPREF1058_RS07790at 130.380 kb on - strand, within HMPREF1058_RS07790at 130.394 kb on + strand, within HMPREF1058_RS07790at 130.395 kb on - strand, within HMPREF1058_RS07790at 130.395 kb on - strand, within HMPREF1058_RS07790at 130.461 kb on - strand, within HMPREF1058_RS07790at 130.553 kb on + strand, within HMPREF1058_RS07790at 130.554 kb on - strand, within HMPREF1058_RS07790at 130.568 kb on - strand, within HMPREF1058_RS07790at 130.591 kb on - strand, within HMPREF1058_RS07790at 130.591 kb on - strand, within HMPREF1058_RS07790at 130.591 kb on - strand, within HMPREF1058_RS07790at 130.591 kb on - strand, within HMPREF1058_RS07790at 130.643 kb on + strand, within HMPREF1058_RS07790at 130.648 kb on - strand, within HMPREF1058_RS07790at 130.767 kb on - strand, within HMPREF1058_RS07790at 130.767 kb on - strand, within HMPREF1058_RS07790at 130.817 kb on + strand, within HMPREF1058_RS07790at 130.817 kb on + strand, within HMPREF1058_RS07790at 130.818 kb on - strand, within HMPREF1058_RS07790at 131.001 kb on + strandat 131.001 kb on + strandat 131.002 kb on - strandat 131.031 kb on + strandat 131.060 kb on - strandat 131.061 kb on + strandat 131.113 kb on - strandat 131.156 kb on + strand, within HMPREF1058_RS07785at 131.238 kb on + strand, within HMPREF1058_RS07785at 131.238 kb on + strand, within HMPREF1058_RS07785at 131.242 kb on - strand, within HMPREF1058_RS07785at 131.318 kb on + strand, within HMPREF1058_RS07785at 131.482 kb on + strand, within HMPREF1058_RS07785at 131.483 kb on - strand, within HMPREF1058_RS07785at 131.484 kb on + strand, within HMPREF1058_RS07785at 131.492 kb on - strand, within HMPREF1058_RS07785at 131.500 kb on - strand, within HMPREF1058_RS07785at 131.540 kb on + strand, within HMPREF1058_RS07785at 131.541 kb on - strand, within HMPREF1058_RS07785at 131.544 kb on + strand, within HMPREF1058_RS07785at 131.545 kb on - strand, within HMPREF1058_RS07785at 131.579 kb on + strand, within HMPREF1058_RS07785at 131.580 kb on - strand, within HMPREF1058_RS07785at 131.604 kb on + strand, within HMPREF1058_RS07785at 131.644 kb on + strand, within HMPREF1058_RS07785at 131.645 kb on - strand, within HMPREF1058_RS07785at 131.701 kb on - strand, within HMPREF1058_RS07785at 131.770 kb on - strand, within HMPREF1058_RS07785at 131.772 kb on + strand, within HMPREF1058_RS07785at 131.922 kb on + strandat 131.966 kb on - strandat 131.990 kb on - strandat 131.990 kb on - strandat 131.994 kb on + strandat 131.994 kb on + strandat 131.995 kb on - strandat 131.995 kb on - strandat 132.036 kb on - strandat 132.043 kb on - strandat 132.209 kb on + strand, within HMPREF1058_RS07780at 132.209 kb on + strand, within HMPREF1058_RS07780at 132.210 kb on - strand, within HMPREF1058_RS07780at 132.210 kb on - strand, within HMPREF1058_RS07780at 132.210 kb on - strand, within HMPREF1058_RS07780at 132.210 kb on - strand, within HMPREF1058_RS07780at 132.212 kb on - strand, within HMPREF1058_RS07780at 132.214 kb on + strand, within HMPREF1058_RS07780at 132.252 kb on - strand, within HMPREF1058_RS07780at 132.252 kb on - strand, within HMPREF1058_RS07780at 132.252 kb on - strand, within HMPREF1058_RS07780at 132.253 kb on + strand, within HMPREF1058_RS07780at 132.254 kb on - strand, within HMPREF1058_RS07780at 132.254 kb on - strand, within HMPREF1058_RS07780at 132.254 kb on - strand, within HMPREF1058_RS07780at 132.254 kb on - strand, within HMPREF1058_RS07780at 132.254 kb on - strand, within HMPREF1058_RS07780at 132.292 kb on - strand, within HMPREF1058_RS07780at 132.332 kb on + strand, within HMPREF1058_RS07780at 132.332 kb on + strand, within HMPREF1058_RS07780at 132.359 kb on + strand, within HMPREF1058_RS07780at 132.360 kb on - strand, within HMPREF1058_RS07780at 132.368 kb on + strand, within HMPREF1058_RS07780at 132.439 kb on - strand, within HMPREF1058_RS07780at 132.490 kb on + strand, within HMPREF1058_RS07780at 132.491 kb on - strand, within HMPREF1058_RS07780at 132.504 kb on + strand, within HMPREF1058_RS07780at 132.526 kb on + strand, within HMPREF1058_RS07780at 132.527 kb on - strand, within HMPREF1058_RS07780at 132.529 kb on - strand, within HMPREF1058_RS07780at 132.529 kb on - strand, within HMPREF1058_RS07780at 132.602 kb on - strand, within HMPREF1058_RS07780at 132.602 kb on - strand, within HMPREF1058_RS07780at 132.679 kb on + strand, within HMPREF1058_RS07780at 132.687 kb on + strand, within HMPREF1058_RS07780at 132.688 kb on - strand, within HMPREF1058_RS07780at 132.792 kb on + strand, within HMPREF1058_RS07780at 132.828 kb on + strand, within HMPREF1058_RS07780at 132.829 kb on - strand, within HMPREF1058_RS07780at 132.895 kb on - strandat 132.941 kb on + strand, within HMPREF1058_RS07780at 132.945 kb on - strand, within HMPREF1058_RS07780at 132.962 kb on - strand, within HMPREF1058_RS07780at 132.965 kb on + strand, within HMPREF1058_RS07780at 132.966 kb on - strand, within HMPREF1058_RS07780

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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130,128 - HMPREF1058_RS07790 0.51 +1.3
130,297 - HMPREF1058_RS07790 0.60 -0.8
130,311 - HMPREF1058_RS07790 0.61 +0.5
130,311 - HMPREF1058_RS07790 0.61 -0.4
130,315 + HMPREF1058_RS07790 0.61 +0.3
130,349 + HMPREF1058_RS07790 0.63 +0.9
130,380 - HMPREF1058_RS07790 0.64 -2.4
130,394 + HMPREF1058_RS07790 0.65 -0.4
130,395 - HMPREF1058_RS07790 0.65 -0.6
130,395 - HMPREF1058_RS07790 0.65 +0.2
130,461 - HMPREF1058_RS07790 0.69 -2.3
130,553 + HMPREF1058_RS07790 0.73 +4.8
130,554 - HMPREF1058_RS07790 0.74 -1.1
130,568 - HMPREF1058_RS07790 0.74 -2.7
130,591 - HMPREF1058_RS07790 0.75 -0.7
130,591 - HMPREF1058_RS07790 0.75 -1.2
130,591 - HMPREF1058_RS07790 0.75 -2.4
130,591 - HMPREF1058_RS07790 0.75 -1.0
130,643 + HMPREF1058_RS07790 0.78 -0.1
130,648 - HMPREF1058_RS07790 0.78 -3.9
130,767 - HMPREF1058_RS07790 0.85 +0.6
130,767 - HMPREF1058_RS07790 0.85 -2.4
130,817 + HMPREF1058_RS07790 0.87 -0.2
130,817 + HMPREF1058_RS07790 0.87 -0.3
130,818 - HMPREF1058_RS07790 0.87 +0.9
131,001 + +0.3
131,001 + +0.7
131,002 - -1.8
131,031 + +0.6
131,060 - -0.7
131,061 + +0.2
131,113 - +0.0
131,156 + HMPREF1058_RS07785 0.10 -0.8
131,238 + HMPREF1058_RS07785 0.19 -2.7
131,238 + HMPREF1058_RS07785 0.19 -2.7
131,242 - HMPREF1058_RS07785 0.20 -2.4
131,318 + HMPREF1058_RS07785 0.28 -3.2
131,482 + HMPREF1058_RS07785 0.46 -0.7
131,483 - HMPREF1058_RS07785 0.46 -1.9
131,484 + HMPREF1058_RS07785 0.46 -0.1
131,492 - HMPREF1058_RS07785 0.47 -0.8
131,500 - HMPREF1058_RS07785 0.48 -1.5
131,540 + HMPREF1058_RS07785 0.53 -1.7
131,541 - HMPREF1058_RS07785 0.53 -1.1
131,544 + HMPREF1058_RS07785 0.53 -2.1
131,545 - HMPREF1058_RS07785 0.53 -0.2
131,579 + HMPREF1058_RS07785 0.57 +0.7
131,580 - HMPREF1058_RS07785 0.57 +0.9
131,604 + HMPREF1058_RS07785 0.60 -0.8
131,644 + HMPREF1058_RS07785 0.64 -1.1
131,645 - HMPREF1058_RS07785 0.64 -0.1
131,701 - HMPREF1058_RS07785 0.70 -2.9
131,770 - HMPREF1058_RS07785 0.78 -1.8
131,772 + HMPREF1058_RS07785 0.78 -1.4
131,922 + -0.1
131,966 - -1.2
131,990 - -0.1
131,990 - -0.1
131,994 + +0.6
131,994 + +2.9
131,995 - +2.5
131,995 - +2.6
132,036 - +1.6
132,043 - +1.9
132,209 + HMPREF1058_RS07780 0.12 -0.5
132,209 + HMPREF1058_RS07780 0.12 +1.5
132,210 - HMPREF1058_RS07780 0.12 +0.4
132,210 - HMPREF1058_RS07780 0.12 -1.7
132,210 - HMPREF1058_RS07780 0.12 -0.6
132,210 - HMPREF1058_RS07780 0.12 +2.5
132,212 - HMPREF1058_RS07780 0.12 -1.2
132,214 + HMPREF1058_RS07780 0.12 +2.0
132,252 - HMPREF1058_RS07780 0.14 +2.8
132,252 - HMPREF1058_RS07780 0.14 +0.7
132,252 - HMPREF1058_RS07780 0.14 +2.2
132,253 + HMPREF1058_RS07780 0.14 +1.4
132,254 - HMPREF1058_RS07780 0.14 -0.6
132,254 - HMPREF1058_RS07780 0.14 -1.1
132,254 - HMPREF1058_RS07780 0.14 -0.1
132,254 - HMPREF1058_RS07780 0.14 -0.7
132,254 - HMPREF1058_RS07780 0.14 -2.1
132,292 - HMPREF1058_RS07780 0.16 -1.1
132,332 + HMPREF1058_RS07780 0.18 +0.2
132,332 + HMPREF1058_RS07780 0.18 -0.7
132,359 + HMPREF1058_RS07780 0.20 +1.2
132,360 - HMPREF1058_RS07780 0.20 -0.5
132,368 + HMPREF1058_RS07780 0.20 -0.9
132,439 - HMPREF1058_RS07780 0.24 -0.7
132,490 + HMPREF1058_RS07780 0.27 +0.6
132,491 - HMPREF1058_RS07780 0.27 -0.5
132,504 + HMPREF1058_RS07780 0.27 +1.2
132,526 + HMPREF1058_RS07780 0.28 -0.2
132,527 - HMPREF1058_RS07780 0.29 +1.5
132,529 - HMPREF1058_RS07780 0.29 -0.1
132,529 - HMPREF1058_RS07780 0.29 -0.9
132,602 - HMPREF1058_RS07780 0.32 -0.5
132,602 - HMPREF1058_RS07780 0.32 +0.8
132,679 + HMPREF1058_RS07780 0.36 +0.5
132,687 + HMPREF1058_RS07780 0.37 +2.1
132,688 - HMPREF1058_RS07780 0.37 -0.7
132,792 + HMPREF1058_RS07780 0.42 +0.3
132,828 + HMPREF1058_RS07780 0.44 +0.2
132,829 - HMPREF1058_RS07780 0.44 +0.2
132,895 - +0.5
132,941 + HMPREF1058_RS07780 0.50 -0.7
132,945 - HMPREF1058_RS07780 0.50 +0.6
132,962 - HMPREF1058_RS07780 0.51 -1.7
132,965 + HMPREF1058_RS07780 0.51 +1.2
132,966 - HMPREF1058_RS07780 0.52 +0.5

Or see this region's nucleotide sequence