Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07760

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
137,889	+		HMPREF1058_RS07765	0.25	-2.7
137,929	+		HMPREF1058_RS07765	0.29	-2.4
137,929	+		HMPREF1058_RS07765	0.29	-1.7
137,930	-		HMPREF1058_RS07765	0.29	-0.7
137,941	+		HMPREF1058_RS07765	0.30	-2.4
137,942	-		HMPREF1058_RS07765	0.30	-1.1
138,004	-		HMPREF1058_RS07765	0.36	-1.1
138,040	-		HMPREF1058_RS07765	0.39	-1.7
138,134	-		HMPREF1058_RS07765	0.48	-1.1
138,186	-		HMPREF1058_RS07765	0.53	-2.2
138,188	-		HMPREF1058_RS07765	0.53	-0.1
138,190	+		HMPREF1058_RS07765	0.53	-4.2
138,191	-		HMPREF1058_RS07765	0.53	-0.1
138,258	+		HMPREF1058_RS07765	0.59	-4.0
138,314	+		HMPREF1058_RS07765	0.65	-1.9
138,346	+		HMPREF1058_RS07765	0.68	-1.7
138,394	-		HMPREF1058_RS07765	0.72	-3.9
138,442	-		HMPREF1058_RS07765	0.77	-2.2
138,525	+		HMPREF1058_RS07765	0.84	-0.4
138,526	-		HMPREF1058_RS07765	0.84	-1.1
138,530	-		HMPREF1058_RS07765	0.85	-2.5
138,560	+		HMPREF1058_RS07765	0.88	-3.9
138,561	-		HMPREF1058_RS07765	0.88	-0.9
138,561	-		HMPREF1058_RS07765	0.88	-0.3
138,593	+				-1.4
138,596	-				-1.7
138,596	-				-2.4
138,596	-				-3.2
138,702	-				-3.4
138,709	+				-1.9
139,005	-		HMPREF1058_RS07760	0.10	-1.1
139,024	+		HMPREF1058_RS07760	0.11	-3.1
139,025	-		HMPREF1058_RS07760	0.11	-1.5
139,102	+		HMPREF1058_RS07760	0.13	-0.8
139,108	-		HMPREF1058_RS07760	0.13	-1.5
139,108	-		HMPREF1058_RS07760	0.13	-2.5
139,364	+		HMPREF1058_RS07760	0.22	-1.7
139,364	+		HMPREF1058_RS07760	0.22	-1.9
139,364	+		HMPREF1058_RS07760	0.22	-4.3
139,364	+		HMPREF1058_RS07760	0.22	-1.1
139,364	+		HMPREF1058_RS07760	0.22	-0.1
139,392	+		HMPREF1058_RS07760	0.23	-1.7
139,393	-		HMPREF1058_RS07760	0.23	+1.2
139,393	-		HMPREF1058_RS07760	0.23	-5.5
139,394	+		HMPREF1058_RS07760	0.23	-2.5
139,406	-		HMPREF1058_RS07760	0.23	-2.1
139,442	+		HMPREF1058_RS07760	0.24	-0.1
139,443	-		HMPREF1058_RS07760	0.24	-2.9
139,443	-				-0.1
139,446	+		HMPREF1058_RS07760	0.24	-2.9
139,446	+		HMPREF1058_RS07760	0.24	-0.1
139,447	-		HMPREF1058_RS07760	0.24	-2.7
139,447	-		HMPREF1058_RS07760	0.24	-2.4
139,466	+		HMPREF1058_RS07760	0.25	-1.2
139,467	-		HMPREF1058_RS07760	0.25	-3.0
139,467	-		HMPREF1058_RS07760	0.25	-2.7
139,496	-		HMPREF1058_RS07760	0.26	-1.1
139,500	-		HMPREF1058_RS07760	0.26	-1.3
139,627	-		HMPREF1058_RS07760	0.30	-0.2
139,640	-		HMPREF1058_RS07760	0.31	-1.7
139,640	-		HMPREF1058_RS07760	0.31	-2.6
139,664	-		HMPREF1058_RS07760	0.31	-0.6
139,693	-		HMPREF1058_RS07760	0.32	-3.5
139,721	-		HMPREF1058_RS07760	0.33	-3.7
139,808	+		HMPREF1058_RS07760	0.36	-2.1
139,809	-		HMPREF1058_RS07760	0.36	-3.0
139,815	-		HMPREF1058_RS07760	0.36	-2.7
139,819	+		HMPREF1058_RS07760	0.36	-4.2
139,820	-		HMPREF1058_RS07760	0.36	-2.9
139,899	-		HMPREF1058_RS07760	0.39	-2.4
139,919	+		HMPREF1058_RS07760	0.40	-4.1
140,028	-		HMPREF1058_RS07760	0.43	-2.8
140,060	+		HMPREF1058_RS07760	0.44	-3.2
140,132	+		HMPREF1058_RS07760	0.47	-2.1
140,144	+		HMPREF1058_RS07760	0.47	-3.4
140,145	-		HMPREF1058_RS07760	0.47	-3.1
140,164	-		HMPREF1058_RS07760	0.48	-1.8
140,164	-		HMPREF1058_RS07760	0.48	-2.3
140,164	-		HMPREF1058_RS07760	0.48	-1.1
140,175	+		HMPREF1058_RS07760	0.48	-0.1
140,256	+		HMPREF1058_RS07760	0.51	-2.4
140,347	-		HMPREF1058_RS07760	0.54	-1.7
140,350	+		HMPREF1058_RS07760	0.54	-0.7
140,366	+		HMPREF1058_RS07760	0.54	-1.1
140,499	+		HMPREF1058_RS07760	0.59	-2.7
140,499	+		HMPREF1058_RS07760	0.59	-4.4
140,499	+		HMPREF1058_RS07760	0.59	-1.7
140,500	-		HMPREF1058_RS07760	0.59	-3.4
140,507	+		HMPREF1058_RS07760	0.59	-3.4
140,519	+		HMPREF1058_RS07760	0.59	-2.1
140,519	+		HMPREF1058_RS07760	0.59	-3.5
140,519	+		HMPREF1058_RS07760	0.59	-2.2
140,520	-		HMPREF1058_RS07760	0.59	-1.7
140,520	-		HMPREF1058_RS07760	0.59	-1.1
140,520	-		HMPREF1058_RS07760	0.59	-2.1
140,521	+		HMPREF1058_RS07760	0.59	-1.7
140,522	-		HMPREF1058_RS07760	0.59	-2.4
140,522	-		HMPREF1058_RS07760	0.59	-3.5
140,627	-		HMPREF1058_RS07760	0.63	-1.3
140,875	-		HMPREF1058_RS07760	0.71	-1.7
140,881	+		HMPREF1058_RS07760	0.71	-1.7
140,886	+		HMPREF1058_RS07760	0.71	-3.1
140,887	-		HMPREF1058_RS07760	0.71	-3.0
140,945	-		HMPREF1058_RS07760	0.73	+1.5
140,999	-		HMPREF1058_RS07760	0.75	-3.5
141,002	+		HMPREF1058_RS07760	0.75	-3.7
141,007	+		HMPREF1058_RS07760	0.75	-2.1
141,008	-		HMPREF1058_RS07760	0.75	-1.9
141,011	-		HMPREF1058_RS07760	0.75	-0.1
141,062	+		HMPREF1058_RS07760	0.77	-3.1
141,139	-		HMPREF1058_RS07760	0.79	-0.1
141,139	-		HMPREF1058_RS07760	0.79	-3.0
141,140	+		HMPREF1058_RS07760	0.79	-2.1
141,140	+		HMPREF1058_RS07760	0.79	-0.1
141,148	+		HMPREF1058_RS07760	0.80	-1.4
141,313	-		HMPREF1058_RS07760	0.85	-4.2
141,313	-		HMPREF1058_RS07760	0.85	-1.6
141,468	-		HMPREF1058_RS07760	0.90	-1.1
141,551	+				+0.9
141,552	-				-2.7
141,552	-				-0.1
141,669	-				-2.7
141,716	+				-3.2
141,731	-				-3.6
141,731	-				-2.5
141,731	-				-4.2
141,732	+				-3.2
141,732	+				-1.1
141,733	-				-1.7
141,741	-				-1.4
141,774	+				-0.1
141,774	+				-2.2
141,795	+				-1.2
141,795	+				-1.3
141,796	-				-2.7
141,874	-				-1.1
141,937	+		HMPREF1058_RS07755	0.12	-1.8
141,988	+		HMPREF1058_RS07755	0.15	-2.9
141,997	+		HMPREF1058_RS07755	0.16	-2.4
142,037	+		HMPREF1058_RS07755	0.18	-2.9
142,038	-		HMPREF1058_RS07755	0.18	-2.1
142,038	-		HMPREF1058_RS07755	0.18	-4.0
142,111	-		HMPREF1058_RS07755	0.23	-1.4
142,117	+		HMPREF1058_RS07755	0.24	-3.1
142,117	+		HMPREF1058_RS07755	0.24	-3.9
142,168	-		HMPREF1058_RS07755	0.27	-2.7
142,175	-		HMPREF1058_RS07755	0.28	-5.2
142,223	-		HMPREF1058_RS07755	0.31	-3.4
142,225	-		HMPREF1058_RS07755	0.31	-1.4
142,291	+		HMPREF1058_RS07755	0.35	-3.2
142,292	-		HMPREF1058_RS07755	0.36	-1.1
142,405	-		HMPREF1058_RS07755	0.43	-1.7
142,425	+		HMPREF1058_RS07755	0.44	-2.1
142,527	+		HMPREF1058_RS07755	0.51	-0.1
142,619	+		HMPREF1058_RS07755	0.58	-0.9
142,656	+		HMPREF1058_RS07755	0.60	-2.9