Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07750

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07755 and HMPREF1058_RS07750 overlap by 4 nucleotidesHMPREF1058_RS07750 and HMPREF1058_RS07745 are separated by 90 nucleotides HMPREF1058_RS07755: HMPREF1058_RS07755 - TolC family protein, at 141,763 to 143,250 _RS07755 HMPREF1058_RS07750: HMPREF1058_RS07750 - efflux RND transporter permease subunit, at 143,247 to 146,423 _RS07750 HMPREF1058_RS07745: HMPREF1058_RS07745 - N-acetylglucosamine-6-phosphate deacetylase, at 146,514 to 147,677 _RS07745 Position (kb) 143 144 145 146 147Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 142.291 kb on + strand, within HMPREF1058_RS07755at 142.292 kb on - strand, within HMPREF1058_RS07755at 142.405 kb on - strand, within HMPREF1058_RS07755at 142.425 kb on + strand, within HMPREF1058_RS07755at 142.527 kb on + strand, within HMPREF1058_RS07755at 142.619 kb on + strand, within HMPREF1058_RS07755at 142.656 kb on + strand, within HMPREF1058_RS07755at 142.873 kb on + strand, within HMPREF1058_RS07755at 142.873 kb on + strand, within HMPREF1058_RS07755at 142.873 kb on + strand, within HMPREF1058_RS07755at 142.873 kb on + strand, within HMPREF1058_RS07755at 142.874 kb on - strand, within HMPREF1058_RS07755at 142.875 kb on + strand, within HMPREF1058_RS07755at 142.876 kb on - strand, within HMPREF1058_RS07755at 143.032 kb on + strand, within HMPREF1058_RS07755at 143.080 kb on - strand, within HMPREF1058_RS07755at 143.159 kb on - strandat 143.159 kb on - strandat 143.164 kb on - strandat 143.164 kb on - strandat 143.169 kb on - strandat 143.233 kb on - strandat 143.277 kb on - strandat 143.324 kb on - strandat 143.390 kb on + strandat 143.390 kb on + strandat 143.567 kb on + strand, within HMPREF1058_RS07750at 143.568 kb on - strand, within HMPREF1058_RS07750at 143.568 kb on - strand, within HMPREF1058_RS07750at 143.664 kb on - strand, within HMPREF1058_RS07750at 143.666 kb on + strand, within HMPREF1058_RS07750at 143.670 kb on + strand, within HMPREF1058_RS07750at 143.713 kb on - strand, within HMPREF1058_RS07750at 143.726 kb on + strand, within HMPREF1058_RS07750at 143.808 kb on + strand, within HMPREF1058_RS07750at 143.951 kb on + strand, within HMPREF1058_RS07750at 143.951 kb on + strand, within HMPREF1058_RS07750at 144.112 kb on - strand, within HMPREF1058_RS07750at 144.114 kb on - strand, within HMPREF1058_RS07750at 144.211 kb on + strand, within HMPREF1058_RS07750at 144.211 kb on + strand, within HMPREF1058_RS07750at 144.212 kb on - strand, within HMPREF1058_RS07750at 144.215 kb on + strand, within HMPREF1058_RS07750at 144.216 kb on - strand, within HMPREF1058_RS07750at 144.238 kb on - strand, within HMPREF1058_RS07750at 144.317 kb on - strand, within HMPREF1058_RS07750at 144.368 kb on + strand, within HMPREF1058_RS07750at 144.369 kb on - strand, within HMPREF1058_RS07750at 144.369 kb on - strand, within HMPREF1058_RS07750at 144.371 kb on - strand, within HMPREF1058_RS07750at 144.390 kb on + strand, within HMPREF1058_RS07750at 144.420 kb on + strand, within HMPREF1058_RS07750at 144.421 kb on - strand, within HMPREF1058_RS07750at 144.464 kb on + strand, within HMPREF1058_RS07750at 144.488 kb on + strand, within HMPREF1058_RS07750at 144.589 kb on + strand, within HMPREF1058_RS07750at 144.659 kb on - strand, within HMPREF1058_RS07750at 144.799 kb on - strand, within HMPREF1058_RS07750at 144.829 kb on + strand, within HMPREF1058_RS07750at 144.859 kb on + strand, within HMPREF1058_RS07750at 144.860 kb on - strand, within HMPREF1058_RS07750at 144.860 kb on - strand, within HMPREF1058_RS07750at 144.909 kb on + strand, within HMPREF1058_RS07750at 144.919 kb on + strand, within HMPREF1058_RS07750at 144.932 kb on + strand, within HMPREF1058_RS07750at 144.950 kb on - strand, within HMPREF1058_RS07750at 145.064 kb on + strand, within HMPREF1058_RS07750at 145.064 kb on + strand, within HMPREF1058_RS07750at 145.065 kb on - strand, within HMPREF1058_RS07750at 145.165 kb on - strand, within HMPREF1058_RS07750at 145.165 kb on - strand, within HMPREF1058_RS07750at 145.166 kb on + strand, within HMPREF1058_RS07750at 145.167 kb on - strand, within HMPREF1058_RS07750at 145.167 kb on - strand, within HMPREF1058_RS07750at 145.170 kb on + strand, within HMPREF1058_RS07750at 145.170 kb on + strand, within HMPREF1058_RS07750at 145.171 kb on - strand, within HMPREF1058_RS07750at 145.205 kb on + strand, within HMPREF1058_RS07750at 145.238 kb on + strand, within HMPREF1058_RS07750at 145.238 kb on + strand, within HMPREF1058_RS07750at 145.250 kb on + strand, within HMPREF1058_RS07750at 145.256 kb on - strand, within HMPREF1058_RS07750at 145.298 kb on - strand, within HMPREF1058_RS07750at 145.300 kb on - strand, within HMPREF1058_RS07750at 145.376 kb on + strand, within HMPREF1058_RS07750at 145.377 kb on - strand, within HMPREF1058_RS07750at 145.381 kb on - strand, within HMPREF1058_RS07750at 145.440 kb on - strand, within HMPREF1058_RS07750at 145.489 kb on - strand, within HMPREF1058_RS07750at 145.489 kb on - strand, within HMPREF1058_RS07750at 145.538 kb on + strand, within HMPREF1058_RS07750at 145.539 kb on - strand, within HMPREF1058_RS07750at 145.669 kb on + strand, within HMPREF1058_RS07750at 145.686 kb on - strand, within HMPREF1058_RS07750at 145.688 kb on - strand, within HMPREF1058_RS07750at 145.803 kb on + strand, within HMPREF1058_RS07750at 145.804 kb on - strand, within HMPREF1058_RS07750at 145.809 kb on + strand, within HMPREF1058_RS07750at 145.809 kb on + strand, within HMPREF1058_RS07750at 145.809 kb on + strand, within HMPREF1058_RS07750at 145.810 kb on - strand, within HMPREF1058_RS07750at 145.866 kb on - strand, within HMPREF1058_RS07750at 145.873 kb on + strand, within HMPREF1058_RS07750at 145.874 kb on - strand, within HMPREF1058_RS07750at 145.874 kb on - strand, within HMPREF1058_RS07750at 145.889 kb on + strand, within HMPREF1058_RS07750at 145.889 kb on + strand, within HMPREF1058_RS07750at 145.890 kb on - strand, within HMPREF1058_RS07750at 145.890 kb on - strand, within HMPREF1058_RS07750at 145.945 kb on - strand, within HMPREF1058_RS07750at 145.945 kb on - strand, within HMPREF1058_RS07750at 145.983 kb on - strand, within HMPREF1058_RS07750at 146.049 kb on + strand, within HMPREF1058_RS07750at 146.049 kb on + strand, within HMPREF1058_RS07750at 146.140 kb on + strandat 146.151 kb on - strandat 146.154 kb on + strandat 146.154 kb on + strandat 146.155 kb on - strandat 146.286 kb on - strandat 146.342 kb on + strandat 146.342 kb on + strandat 146.343 kb on - strandat 146.343 kb on - strandat 146.343 kb on - strandat 146.346 kb on - strandat 146.360 kb on + strandat 146.360 kb on + strandat 146.361 kb on - strandat 146.361 kb on - strandat 146.366 kb on + strandat 146.367 kb on - strandat 146.369 kb on - strandat 146.378 kb on - strandat 146.396 kb on - strandat 146.500 kb on - strandat 146.546 kb on + strandat 146.664 kb on + strand, within HMPREF1058_RS07745at 146.664 kb on + strand, within HMPREF1058_RS07745at 146.664 kb on + strand, within HMPREF1058_RS07745at 146.664 kb on + strand, within HMPREF1058_RS07745at 146.665 kb on - strand, within HMPREF1058_RS07745at 146.665 kb on - strand, within HMPREF1058_RS07745at 146.665 kb on - strand, within HMPREF1058_RS07745at 146.665 kb on - strand, within HMPREF1058_RS07745at 146.665 kb on - strand, within HMPREF1058_RS07745at 146.665 kb on - strand, within HMPREF1058_RS07745at 146.665 kb on - strand, within HMPREF1058_RS07745at 146.667 kb on - strand, within HMPREF1058_RS07745at 146.687 kb on + strand, within HMPREF1058_RS07745at 146.687 kb on + strand, within HMPREF1058_RS07745at 146.688 kb on - strand, within HMPREF1058_RS07745at 146.842 kb on + strand, within HMPREF1058_RS07745at 146.893 kb on + strand, within HMPREF1058_RS07745at 146.894 kb on - strand, within HMPREF1058_RS07745at 146.894 kb on - strand, within HMPREF1058_RS07745at 146.894 kb on - strand, within HMPREF1058_RS07745at 146.972 kb on + strand, within HMPREF1058_RS07745at 146.972 kb on + strand, within HMPREF1058_RS07745at 147.071 kb on + strand, within HMPREF1058_RS07745at 147.072 kb on - strand, within HMPREF1058_RS07745at 147.073 kb on + strand, within HMPREF1058_RS07745at 147.074 kb on - strand, within HMPREF1058_RS07745at 147.092 kb on + strand, within HMPREF1058_RS07745at 147.147 kb on - strand, within HMPREF1058_RS07745at 147.274 kb on + strand, within HMPREF1058_RS07745at 147.281 kb on + strand, within HMPREF1058_RS07745at 147.301 kb on - strand, within HMPREF1058_RS07745at 147.301 kb on - strand, within HMPREF1058_RS07745at 147.387 kb on - strand, within HMPREF1058_RS07745at 147.409 kb on + strand, within HMPREF1058_RS07745

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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142,291 + HMPREF1058_RS07755 0.35 -3.2
142,292 - HMPREF1058_RS07755 0.36 -1.1
142,405 - HMPREF1058_RS07755 0.43 -1.7
142,425 + HMPREF1058_RS07755 0.44 -2.1
142,527 + HMPREF1058_RS07755 0.51 -0.1
142,619 + HMPREF1058_RS07755 0.58 -0.9
142,656 + HMPREF1058_RS07755 0.60 -2.9
142,873 + HMPREF1058_RS07755 0.75 -5.0
142,873 + HMPREF1058_RS07755 0.75 -4.3
142,873 + HMPREF1058_RS07755 0.75 -1.1
142,873 + HMPREF1058_RS07755 0.75 -3.6
142,874 - HMPREF1058_RS07755 0.75 -2.8
142,875 + HMPREF1058_RS07755 0.75 -2.4
142,876 - HMPREF1058_RS07755 0.75 -1.9
143,032 + HMPREF1058_RS07755 0.85 -2.4
143,080 - HMPREF1058_RS07755 0.89 -1.9
143,159 - -3.0
143,159 - -2.2
143,164 - -2.6
143,164 - -3.1
143,169 - -2.1
143,233 - -4.2
143,277 - -1.1
143,324 - -2.4
143,390 + -2.8
143,390 + -3.1
143,567 + HMPREF1058_RS07750 0.10 -2.1
143,568 - HMPREF1058_RS07750 0.10 -1.1
143,568 - HMPREF1058_RS07750 0.10 -3.9
143,664 - HMPREF1058_RS07750 0.13 -2.7
143,666 + HMPREF1058_RS07750 0.13 -5.0
143,670 + HMPREF1058_RS07750 0.13 -3.0
143,713 - HMPREF1058_RS07750 0.15 -3.1
143,726 + HMPREF1058_RS07750 0.15 -3.2
143,808 + HMPREF1058_RS07750 0.18 -1.1
143,951 + HMPREF1058_RS07750 0.22 -4.6
143,951 + HMPREF1058_RS07750 0.22 -3.8
144,112 - HMPREF1058_RS07750 0.27 -0.7
144,114 - HMPREF1058_RS07750 0.27 -0.1
144,211 + HMPREF1058_RS07750 0.30 -2.1
144,211 + HMPREF1058_RS07750 0.30 -2.1
144,212 - HMPREF1058_RS07750 0.30 -1.9
144,215 + HMPREF1058_RS07750 0.30 -3.4
144,216 - HMPREF1058_RS07750 0.31 -1.5
144,238 - HMPREF1058_RS07750 0.31 -4.0
144,317 - HMPREF1058_RS07750 0.34 -1.4
144,368 + HMPREF1058_RS07750 0.35 -1.7
144,369 - HMPREF1058_RS07750 0.35 -0.1
144,369 - HMPREF1058_RS07750 0.35 -0.1
144,371 - HMPREF1058_RS07750 0.35 -3.1
144,390 + HMPREF1058_RS07750 0.36 -2.3
144,420 + HMPREF1058_RS07750 0.37 -2.4
144,421 - HMPREF1058_RS07750 0.37 -2.1
144,464 + HMPREF1058_RS07750 0.38 -2.7
144,488 + HMPREF1058_RS07750 0.39 -3.7
144,589 + HMPREF1058_RS07750 0.42 -2.1
144,659 - HMPREF1058_RS07750 0.44 -3.4
144,799 - HMPREF1058_RS07750 0.49 -3.7
144,829 + HMPREF1058_RS07750 0.50 -2.2
144,859 + HMPREF1058_RS07750 0.51 -4.7
144,860 - HMPREF1058_RS07750 0.51 -4.4
144,860 - HMPREF1058_RS07750 0.51 -0.5
144,909 + HMPREF1058_RS07750 0.52 -0.1
144,919 + HMPREF1058_RS07750 0.53 -1.7
144,932 + HMPREF1058_RS07750 0.53 -1.1
144,950 - HMPREF1058_RS07750 0.54 -3.7
145,064 + HMPREF1058_RS07750 0.57 -1.7
145,064 + HMPREF1058_RS07750 0.57 -1.1
145,065 - HMPREF1058_RS07750 0.57 -1.1
145,165 - HMPREF1058_RS07750 0.60 -1.9
145,165 - HMPREF1058_RS07750 0.60 -1.6
145,166 + HMPREF1058_RS07750 0.60 -0.9
145,167 - HMPREF1058_RS07750 0.60 -3.2
145,167 - HMPREF1058_RS07750 0.60 -1.7
145,170 + HMPREF1058_RS07750 0.61 -1.7
145,170 + HMPREF1058_RS07750 0.61 -1.1
145,171 - HMPREF1058_RS07750 0.61 -2.7
145,205 + HMPREF1058_RS07750 0.62 -2.7
145,238 + HMPREF1058_RS07750 0.63 -2.3
145,238 + HMPREF1058_RS07750 0.63 -4.2
145,250 + HMPREF1058_RS07750 0.63 -0.4
145,256 - HMPREF1058_RS07750 0.63 -3.1
145,298 - HMPREF1058_RS07750 0.65 -1.1
145,300 - HMPREF1058_RS07750 0.65 -2.9
145,376 + HMPREF1058_RS07750 0.67 -3.5
145,377 - HMPREF1058_RS07750 0.67 -2.7
145,381 - HMPREF1058_RS07750 0.67 -3.3
145,440 - HMPREF1058_RS07750 0.69 -2.7
145,489 - HMPREF1058_RS07750 0.71 -1.1
145,489 - HMPREF1058_RS07750 0.71 -3.2
145,538 + HMPREF1058_RS07750 0.72 -3.5
145,539 - HMPREF1058_RS07750 0.72 -1.1
145,669 + HMPREF1058_RS07750 0.76 -2.9
145,686 - HMPREF1058_RS07750 0.77 -2.4
145,688 - HMPREF1058_RS07750 0.77 -4.2
145,803 + HMPREF1058_RS07750 0.80 -1.6
145,804 - HMPREF1058_RS07750 0.80 -3.7
145,809 + HMPREF1058_RS07750 0.81 -2.7
145,809 + HMPREF1058_RS07750 0.81 -1.1
145,809 + HMPREF1058_RS07750 0.81 -3.9
145,810 - HMPREF1058_RS07750 0.81 -5.5
145,866 - HMPREF1058_RS07750 0.82 +0.4
145,873 + HMPREF1058_RS07750 0.83 -4.2
145,874 - HMPREF1058_RS07750 0.83 -1.1
145,874 - HMPREF1058_RS07750 0.83 -1.1
145,889 + HMPREF1058_RS07750 0.83 -0.5
145,889 + HMPREF1058_RS07750 0.83 -2.4
145,890 - HMPREF1058_RS07750 0.83 -2.7
145,890 - HMPREF1058_RS07750 0.83 -2.5
145,945 - HMPREF1058_RS07750 0.85 -2.4
145,945 - HMPREF1058_RS07750 0.85 -1.1
145,983 - HMPREF1058_RS07750 0.86 -3.4
146,049 + HMPREF1058_RS07750 0.88 -3.1
146,049 + HMPREF1058_RS07750 0.88 -1.9
146,140 + -2.4
146,151 - -1.1
146,154 + -3.4
146,154 + -2.9
146,155 - -2.3
146,286 - -3.1
146,342 + -4.3
146,342 + -2.1
146,343 - -4.7
146,343 - -1.9
146,343 - -1.1
146,346 - -0.1
146,360 + -1.7
146,360 + -2.4
146,361 - -3.7
146,361 - -2.4
146,366 + -1.3
146,367 - -1.9
146,369 - -0.1
146,378 - -2.4
146,396 - -2.8
146,500 - +0.6
146,546 + -1.7
146,664 + HMPREF1058_RS07745 0.13 -0.1
146,664 + HMPREF1058_RS07745 0.13 -0.6
146,664 + HMPREF1058_RS07745 0.13 +2.7
146,664 + HMPREF1058_RS07745 0.13 +0.8
146,665 - HMPREF1058_RS07745 0.13 -1.4
146,665 - HMPREF1058_RS07745 0.13 +0.8
146,665 - HMPREF1058_RS07745 0.13 -0.8
146,665 - HMPREF1058_RS07745 0.13 +1.9
146,665 - HMPREF1058_RS07745 0.13 -2.3
146,665 - HMPREF1058_RS07745 0.13 -0.4
146,665 - HMPREF1058_RS07745 0.13 +1.5
146,667 - HMPREF1058_RS07745 0.13 -0.8
146,687 + HMPREF1058_RS07745 0.15 -0.1
146,687 + HMPREF1058_RS07745 0.15 +0.5
146,688 - HMPREF1058_RS07745 0.15 -1.7
146,842 + HMPREF1058_RS07745 0.28 -3.1
146,893 + HMPREF1058_RS07745 0.33 +0.8
146,894 - HMPREF1058_RS07745 0.33 -0.9
146,894 - HMPREF1058_RS07745 0.33 -0.5
146,894 - HMPREF1058_RS07745 0.33 +1.2
146,972 + HMPREF1058_RS07745 0.39 +1.4
146,972 + HMPREF1058_RS07745 0.39 -0.7
147,071 + HMPREF1058_RS07745 0.48 -1.7
147,072 - HMPREF1058_RS07745 0.48 -0.9
147,073 + HMPREF1058_RS07745 0.48 -2.1
147,074 - HMPREF1058_RS07745 0.48 +0.1
147,092 + HMPREF1058_RS07745 0.50 +0.8
147,147 - HMPREF1058_RS07745 0.54 -0.1
147,274 + HMPREF1058_RS07745 0.65 +1.8
147,281 + HMPREF1058_RS07745 0.66 +0.3
147,301 - HMPREF1058_RS07745 0.68 -0.3
147,301 - HMPREF1058_RS07745 0.68 -0.3
147,387 - HMPREF1058_RS07745 0.75 +0.6
147,409 + HMPREF1058_RS07745 0.77 -0.8

Or see this region's nucleotide sequence