Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07725 and HMPREF1058_RS07720 are separated by 157 nucleotides HMPREF1058_RS07720 and HMPREF1058_RS07715 are separated by 2 nucleotides
HMPREF1058_RS07725: HMPREF1058_RS07725 - NigD-like N-terminal domain-containing protein, at 151,291 to 152,073
_RS07725
HMPREF1058_RS07720: HMPREF1058_RS07720 - sigma-70 family RNA polymerase sigma factor, at 152,231 to 152,773
_RS07720
HMPREF1058_RS07715: HMPREF1058_RS07715 - porin family protein, at 152,776 to 154,071
_RS07715
Position (kb) 152
153 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 151.269 kb on + strand at 151.324 kb on + strand at 151.325 kb on - strand at 151.347 kb on + strand at 151.359 kb on - strand at 151.363 kb on + strand at 151.531 kb on - strand, within HMPREF1058_RS07725 at 151.567 kb on + strand, within HMPREF1058_RS07725 at 151.609 kb on + strand, within HMPREF1058_RS07725 at 151.620 kb on + strand, within HMPREF1058_RS07725 at 151.683 kb on + strand, within HMPREF1058_RS07725 at 151.740 kb on - strand, within HMPREF1058_RS07725 at 151.752 kb on + strand, within HMPREF1058_RS07725 at 151.753 kb on - strand, within HMPREF1058_RS07725 at 151.767 kb on + strand, within HMPREF1058_RS07725 at 151.799 kb on - strand, within HMPREF1058_RS07725 at 151.803 kb on - strand, within HMPREF1058_RS07725 at 151.871 kb on + strand, within HMPREF1058_RS07725 at 151.872 kb on - strand, within HMPREF1058_RS07725 at 151.897 kb on + strand, within HMPREF1058_RS07725 at 151.897 kb on + strand, within HMPREF1058_RS07725 at 151.986 kb on + strand, within HMPREF1058_RS07725 at 151.986 kb on + strand, within HMPREF1058_RS07725 at 151.994 kb on + strand, within HMPREF1058_RS07725 at 151.995 kb on - strand at 152.015 kb on - strand at 152.017 kb on - strand at 152.032 kb on + strand at 152.050 kb on - strand at 152.167 kb on + strand at 152.168 kb on - strand at 152.304 kb on - strand, within HMPREF1058_RS07720 at 152.338 kb on + strand, within HMPREF1058_RS07720 at 152.339 kb on - strand, within HMPREF1058_RS07720 at 152.392 kb on - strand, within HMPREF1058_RS07720 at 152.417 kb on + strand, within HMPREF1058_RS07720 at 152.418 kb on - strand, within HMPREF1058_RS07720 at 152.458 kb on + strand, within HMPREF1058_RS07720 at 152.542 kb on - strand, within HMPREF1058_RS07720 at 152.621 kb on - strand, within HMPREF1058_RS07720 at 152.637 kb on + strand, within HMPREF1058_RS07720 at 152.638 kb on - strand, within HMPREF1058_RS07720 at 152.644 kb on - strand, within HMPREF1058_RS07720 at 152.663 kb on - strand, within HMPREF1058_RS07720 at 152.699 kb on - strand, within HMPREF1058_RS07720 at 152.699 kb on - strand, within HMPREF1058_RS07720 at 152.699 kb on - strand, within HMPREF1058_RS07720 at 152.718 kb on - strand, within HMPREF1058_RS07720 at 152.771 kb on + strand at 153.333 kb on + strand, within HMPREF1058_RS07715 at 153.673 kb on + strand, within HMPREF1058_RS07715
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 151,269 + +0.6 151,324 + +0.4 151,325 - -1.7 151,347 + +2.4 151,359 - -1.7 151,363 + -0.2 151,531 - HMPREF1058_RS07725 0.31 -4.1 151,567 + HMPREF1058_RS07725 0.35 -0.1 151,609 + HMPREF1058_RS07725 0.41 -1.7 151,620 + HMPREF1058_RS07725 0.42 -2.4 151,683 + HMPREF1058_RS07725 0.50 -3.1 151,740 - HMPREF1058_RS07725 0.57 -1.1 151,752 + HMPREF1058_RS07725 0.59 -2.9 151,753 - HMPREF1058_RS07725 0.59 -2.9 151,767 + HMPREF1058_RS07725 0.61 -1.1 151,799 - HMPREF1058_RS07725 0.65 -3.8 151,803 - HMPREF1058_RS07725 0.65 -1.1 151,871 + HMPREF1058_RS07725 0.74 -0.1 151,872 - HMPREF1058_RS07725 0.74 -3.4 151,897 + HMPREF1058_RS07725 0.77 -1.9 151,897 + HMPREF1058_RS07725 0.77 -1.9 151,986 + HMPREF1058_RS07725 0.89 -3.5 151,986 + HMPREF1058_RS07725 0.89 -1.1 151,994 + HMPREF1058_RS07725 0.90 -1.7 151,995 - -1.1 152,015 - -4.5 152,017 - -1.7 152,032 + -2.9 152,050 - -2.5 152,167 + -0.1 152,168 - -2.2 152,304 - HMPREF1058_RS07720 0.13 -2.1 152,338 + HMPREF1058_RS07720 0.20 -2.9 152,339 - HMPREF1058_RS07720 0.20 -5.3 152,392 - HMPREF1058_RS07720 0.30 -2.4 152,417 + HMPREF1058_RS07720 0.34 -3.9 152,418 - HMPREF1058_RS07720 0.34 -5.0 152,458 + HMPREF1058_RS07720 0.42 -4.7 152,542 - HMPREF1058_RS07720 0.57 -3.5 152,621 - HMPREF1058_RS07720 0.72 -2.4 152,637 + HMPREF1058_RS07720 0.75 -3.2 152,638 - HMPREF1058_RS07720 0.75 -4.8 152,644 - HMPREF1058_RS07720 0.76 -3.2 152,663 - HMPREF1058_RS07720 0.80 -0.1 152,699 - HMPREF1058_RS07720 0.86 -3.2 152,699 - HMPREF1058_RS07720 0.86 -4.8 152,699 - HMPREF1058_RS07720 0.86 -1.7 152,718 - HMPREF1058_RS07720 0.90 -4.1 152,771 + -0.1 153,333 + HMPREF1058_RS07715 0.43 -0.1 153,673 + HMPREF1058_RS07715 0.69 -1.7
Or see this region's nucleotide sequence