Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07700 and HMPREF1058_RS07695 are separated by 82 nucleotides HMPREF1058_RS07695 and HMPREF1058_RS07690 overlap by 4 nucleotides
HMPREF1058_RS07700: HMPREF1058_RS07700 - bifunctional oligoribonuclease/PAP phosphatase NrnA, at 156,816 to 157,856
_RS07700
HMPREF1058_RS07695: HMPREF1058_RS07695 - DUF4827 domain-containing protein, at 157,939 to 158,574
_RS07695
HMPREF1058_RS07690: HMPREF1058_RS07690 - phosphoglucosamine mutase, at 158,571 to 159,959
_RS07690
Position (kb) 157
158
159 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 157.887 kb on + strand at 157.949 kb on + strand at 157.953 kb on + strand at 157.955 kb on + strand at 157.955 kb on + strand at 157.955 kb on + strand at 158.017 kb on + strand, within HMPREF1058_RS07695 at 158.048 kb on + strand, within HMPREF1058_RS07695 at 158.118 kb on + strand, within HMPREF1058_RS07695 at 158.170 kb on + strand, within HMPREF1058_RS07695 at 158.172 kb on + strand, within HMPREF1058_RS07695 at 158.172 kb on + strand, within HMPREF1058_RS07695 at 158.328 kb on + strand, within HMPREF1058_RS07695 at 158.328 kb on + strand, within HMPREF1058_RS07695 at 158.381 kb on + strand, within HMPREF1058_RS07695 at 158.386 kb on + strand, within HMPREF1058_RS07695 at 158.386 kb on + strand, within HMPREF1058_RS07695 at 158.386 kb on + strand, within HMPREF1058_RS07695 at 158.388 kb on + strand, within HMPREF1058_RS07695 at 158.407 kb on + strand, within HMPREF1058_RS07695 at 158.407 kb on + strand, within HMPREF1058_RS07695 at 158.407 kb on + strand, within HMPREF1058_RS07695 at 158.407 kb on + strand, within HMPREF1058_RS07695 at 158.407 kb on + strand, within HMPREF1058_RS07695 at 158.411 kb on + strand, within HMPREF1058_RS07695 at 158.492 kb on + strand, within HMPREF1058_RS07695 at 158.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 157,887 + -1.1 157,949 + -2.7 157,953 + -4.2 157,955 + -4.2 157,955 + -2.4 157,955 + -4.3 158,017 + HMPREF1058_RS07695 0.12 -1.1 158,048 + HMPREF1058_RS07695 0.17 -1.1 158,118 + HMPREF1058_RS07695 0.28 -2.9 158,170 + HMPREF1058_RS07695 0.36 -3.4 158,172 + HMPREF1058_RS07695 0.37 -3.4 158,172 + HMPREF1058_RS07695 0.37 -1.1 158,328 + HMPREF1058_RS07695 0.61 -2.1 158,328 + HMPREF1058_RS07695 0.61 -4.7 158,381 + HMPREF1058_RS07695 0.69 -3.1 158,386 + HMPREF1058_RS07695 0.70 -4.2 158,386 + HMPREF1058_RS07695 0.70 -4.2 158,386 + HMPREF1058_RS07695 0.70 -2.9 158,388 + HMPREF1058_RS07695 0.71 -1.7 158,407 + HMPREF1058_RS07695 0.74 -1.1 158,407 + HMPREF1058_RS07695 0.74 -4.0 158,407 + HMPREF1058_RS07695 0.74 -3.9 158,407 + HMPREF1058_RS07695 0.74 -2.1 158,407 + HMPREF1058_RS07695 0.74 -0.1 158,411 + HMPREF1058_RS07695 0.74 -3.7 158,492 + HMPREF1058_RS07695 0.87 -3.2 158,557 + -1.7
Or see this region's nucleotide sequence