Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07680 and HMPREF1058_RS07675 are separated by 185 nucleotides HMPREF1058_RS07675 and HMPREF1058_RS07670 are separated by 262 nucleotides
HMPREF1058_RS07680: HMPREF1058_RS07680 - radical SAM family heme chaperone HemW, at 161,957 to 163,087
_RS07680
HMPREF1058_RS07675: HMPREF1058_RS07675 - elongation factor G, at 163,273 to 165,432
_RS07675
HMPREF1058_RS07670: HMPREF1058_RS07670 - HAMP domain-containing histidine kinase, at 165,695 to 167,263
_RS07670
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 162.289 kb on - strand, within HMPREF1058_RS07680 at 162.521 kb on - strand, within HMPREF1058_RS07680 at 162.521 kb on - strand, within HMPREF1058_RS07680 at 162.538 kb on + strand, within HMPREF1058_RS07680 at 162.569 kb on + strand, within HMPREF1058_RS07680 at 162.629 kb on - strand, within HMPREF1058_RS07680 at 162.631 kb on + strand, within HMPREF1058_RS07680 at 162.631 kb on + strand, within HMPREF1058_RS07680 at 162.632 kb on - strand, within HMPREF1058_RS07680 at 162.710 kb on + strand, within HMPREF1058_RS07680 at 162.808 kb on + strand, within HMPREF1058_RS07680 at 162.846 kb on + strand, within HMPREF1058_RS07680 at 162.846 kb on + strand, within HMPREF1058_RS07680 at 162.848 kb on + strand, within HMPREF1058_RS07680 at 162.848 kb on + strand, within HMPREF1058_RS07680 at 162.849 kb on - strand, within HMPREF1058_RS07680 at 162.859 kb on + strand, within HMPREF1058_RS07680 at 162.924 kb on - strand, within HMPREF1058_RS07680 at 162.932 kb on + strand, within HMPREF1058_RS07680 at 162.935 kb on - strand, within HMPREF1058_RS07680 at 162.993 kb on + strand at 162.993 kb on + strand at 162.993 kb on + strand at 163.043 kb on - strand at 163.066 kb on + strand at 163.067 kb on - strand at 163.071 kb on - strand at 163.071 kb on - strand at 163.075 kb on - strand at 163.075 kb on - strand at 163.075 kb on - strand at 163.128 kb on + strand at 163.128 kb on + strand at 163.128 kb on + strand at 163.129 kb on - strand at 163.202 kb on + strand at 163.230 kb on - strand at 163.266 kb on - strand at 163.280 kb on + strand at 163.280 kb on + strand at 163.283 kb on - strand at 163.300 kb on - strand at 163.375 kb on - strand at 163.379 kb on + strand at 163.379 kb on + strand at 163.380 kb on - strand at 163.444 kb on + strand at 163.478 kb on + strand at 163.499 kb on + strand, within HMPREF1058_RS07675 at 163.503 kb on + strand, within HMPREF1058_RS07675 at 163.503 kb on + strand, within HMPREF1058_RS07675 at 163.505 kb on + strand, within HMPREF1058_RS07675 at 163.505 kb on + strand, within HMPREF1058_RS07675 at 163.575 kb on + strand, within HMPREF1058_RS07675 at 163.575 kb on + strand, within HMPREF1058_RS07675 at 163.699 kb on + strand, within HMPREF1058_RS07675 at 163.779 kb on + strand, within HMPREF1058_RS07675 at 163.819 kb on + strand, within HMPREF1058_RS07675 at 163.848 kb on + strand, within HMPREF1058_RS07675 at 163.849 kb on - strand, within HMPREF1058_RS07675 at 164.023 kb on - strand, within HMPREF1058_RS07675 at 164.023 kb on - strand, within HMPREF1058_RS07675 at 164.042 kb on + strand, within HMPREF1058_RS07675 at 164.042 kb on + strand, within HMPREF1058_RS07675 at 164.043 kb on - strand, within HMPREF1058_RS07675 at 164.043 kb on - strand, within HMPREF1058_RS07675 at 164.091 kb on + strand, within HMPREF1058_RS07675 at 164.134 kb on - strand, within HMPREF1058_RS07675 at 164.173 kb on - strand, within HMPREF1058_RS07675 at 164.182 kb on + strand, within HMPREF1058_RS07675 at 164.377 kb on - strand, within HMPREF1058_RS07675 at 164.377 kb on - strand, within HMPREF1058_RS07675 at 164.396 kb on + strand, within HMPREF1058_RS07675 at 164.410 kb on - strand, within HMPREF1058_RS07675 at 164.451 kb on + strand, within HMPREF1058_RS07675 at 164.453 kb on - strand, within HMPREF1058_RS07675 at 164.461 kb on - strand, within HMPREF1058_RS07675 at 164.466 kb on + strand, within HMPREF1058_RS07675 at 164.507 kb on + strand, within HMPREF1058_RS07675 at 164.508 kb on - strand, within HMPREF1058_RS07675 at 164.523 kb on + strand, within HMPREF1058_RS07675 at 164.524 kb on - strand, within HMPREF1058_RS07675 at 164.592 kb on + strand, within HMPREF1058_RS07675 at 164.592 kb on + strand, within HMPREF1058_RS07675 at 164.592 kb on + strand, within HMPREF1058_RS07675 at 164.593 kb on - strand, within HMPREF1058_RS07675 at 164.683 kb on - strand, within HMPREF1058_RS07675 at 164.683 kb on - strand, within HMPREF1058_RS07675 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.824 kb on + strand, within HMPREF1058_RS07675 at 164.826 kb on + strand, within HMPREF1058_RS07675 at 164.876 kb on + strand, within HMPREF1058_RS07675 at 164.877 kb on - strand, within HMPREF1058_RS07675 at 165.021 kb on - strand, within HMPREF1058_RS07675 at 165.114 kb on + strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.624 kb on + strand at 165.720 kb on + strand at 165.758 kb on + strand at 165.871 kb on + strand, within HMPREF1058_RS07670 at 165.979 kb on + strand, within HMPREF1058_RS07670 at 166.198 kb on + strand, within HMPREF1058_RS07670 at 166.276 kb on + strand, within HMPREF1058_RS07670
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 162,289 - HMPREF1058_RS07680 0.29 -2.1 162,521 - HMPREF1058_RS07680 0.50 +2.7 162,521 - HMPREF1058_RS07680 0.50 -0.1 162,538 + HMPREF1058_RS07680 0.51 -0.1 162,569 + HMPREF1058_RS07680 0.54 -1.9 162,629 - HMPREF1058_RS07680 0.59 +2.1 162,631 + HMPREF1058_RS07680 0.60 -0.4 162,631 + HMPREF1058_RS07680 0.60 -0.5 162,632 - HMPREF1058_RS07680 0.60 -0.9 162,710 + HMPREF1058_RS07680 0.67 -1.6 162,808 + HMPREF1058_RS07680 0.75 -0.1 162,846 + HMPREF1058_RS07680 0.79 -0.2 162,846 + HMPREF1058_RS07680 0.79 -1.7 162,848 + HMPREF1058_RS07680 0.79 -2.1 162,848 + HMPREF1058_RS07680 0.79 +2.2 162,849 - HMPREF1058_RS07680 0.79 -0.1 162,859 + HMPREF1058_RS07680 0.80 +0.0 162,924 - HMPREF1058_RS07680 0.85 -1.2 162,932 + HMPREF1058_RS07680 0.86 -2.7 162,935 - HMPREF1058_RS07680 0.86 -0.9 162,993 + +0.5 162,993 + -2.6 162,993 + -0.8 163,043 - +0.2 163,066 + -1.5 163,067 - -2.4 163,071 - -0.2 163,071 - +0.4 163,075 - -0.1 163,075 - +0.8 163,075 - +0.7 163,128 + -0.5 163,128 + +0.5 163,128 + +0.6 163,129 - -2.9 163,202 + +0.2 163,230 - -2.2 163,266 - -0.1 163,280 + -3.7 163,280 + -3.9 163,283 - -2.2 163,300 - -2.1 163,375 - -3.7 163,379 + -2.1 163,379 + -1.7 163,380 - -1.7 163,444 + -3.5 163,478 + -2.1 163,499 + HMPREF1058_RS07675 0.10 -1.1 163,503 + HMPREF1058_RS07675 0.11 -2.7 163,503 + HMPREF1058_RS07675 0.11 -2.1 163,505 + HMPREF1058_RS07675 0.11 -0.1 163,505 + HMPREF1058_RS07675 0.11 -2.7 163,575 + HMPREF1058_RS07675 0.14 -1.7 163,575 + HMPREF1058_RS07675 0.14 -3.0 163,699 + HMPREF1058_RS07675 0.20 -1.7 163,779 + HMPREF1058_RS07675 0.23 -1.7 163,819 + HMPREF1058_RS07675 0.25 -3.2 163,848 + HMPREF1058_RS07675 0.27 -1.7 163,849 - HMPREF1058_RS07675 0.27 -2.7 164,023 - HMPREF1058_RS07675 0.35 -3.2 164,023 - HMPREF1058_RS07675 0.35 -1.7 164,042 + HMPREF1058_RS07675 0.36 -0.1 164,042 + HMPREF1058_RS07675 0.36 -2.9 164,043 - HMPREF1058_RS07675 0.36 -2.9 164,043 - HMPREF1058_RS07675 0.36 -2.9 164,091 + HMPREF1058_RS07675 0.38 -4.8 164,134 - HMPREF1058_RS07675 0.40 -1.7 164,173 - HMPREF1058_RS07675 0.42 -0.1 164,182 + HMPREF1058_RS07675 0.42 -4.0 164,377 - HMPREF1058_RS07675 0.51 -1.1 164,377 - HMPREF1058_RS07675 0.51 -0.1 164,396 + HMPREF1058_RS07675 0.52 -3.7 164,410 - HMPREF1058_RS07675 0.53 -1.7 164,451 + HMPREF1058_RS07675 0.55 -0.1 164,453 - HMPREF1058_RS07675 0.55 -0.1 164,461 - HMPREF1058_RS07675 0.55 -2.9 164,466 + HMPREF1058_RS07675 0.55 -2.1 164,507 + HMPREF1058_RS07675 0.57 -2.4 164,508 - HMPREF1058_RS07675 0.57 -2.7 164,523 + HMPREF1058_RS07675 0.58 -2.9 164,524 - HMPREF1058_RS07675 0.58 -3.1 164,592 + HMPREF1058_RS07675 0.61 -4.2 164,592 + HMPREF1058_RS07675 0.61 -2.1 164,592 + HMPREF1058_RS07675 0.61 -5.2 164,593 - HMPREF1058_RS07675 0.61 -1.1 164,683 - HMPREF1058_RS07675 0.65 -1.7 164,683 - HMPREF1058_RS07675 0.65 -3.5 164,798 - HMPREF1058_RS07675 0.71 -4.3 164,798 - HMPREF1058_RS07675 0.71 -1.1 164,824 + HMPREF1058_RS07675 0.72 -2.7 164,826 + HMPREF1058_RS07675 0.72 -4.1 164,876 + HMPREF1058_RS07675 0.74 -4.3 164,877 - HMPREF1058_RS07675 0.74 -2.4 165,021 - HMPREF1058_RS07675 0.81 -2.1 165,114 + HMPREF1058_RS07675 0.85 -0.1 165,115 - HMPREF1058_RS07675 0.85 -2.7 165,115 - HMPREF1058_RS07675 0.85 -3.7 165,624 + +1.5 165,720 + -1.1 165,758 + -2.7 165,871 + HMPREF1058_RS07670 0.11 -2.9 165,979 + HMPREF1058_RS07670 0.18 -1.1 166,198 + HMPREF1058_RS07670 0.32 -3.9 166,276 + HMPREF1058_RS07670 0.37 -1.1
Or see this region's nucleotide sequence