Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07580 and HMPREF1058_RS07575 are separated by 337 nucleotides HMPREF1058_RS07575 and HMPREF1058_RS07570 are separated by 19 nucleotides
HMPREF1058_RS07580: HMPREF1058_RS07580 - chromosomal replication initiator protein DnaA, at 185,735 to 187,141
_RS07580
HMPREF1058_RS07575: HMPREF1058_RS07575 - MCE family protein, at 187,479 to 188,366
_RS07575
HMPREF1058_RS07570: HMPREF1058_RS07570 - N-acetylmuramoyl-L-alanine amidase, at 188,386 to 189,615
_RS07570
Position (kb) 187
188
189 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 187.264 kb on - strand at 187.382 kb on - strand at 187.389 kb on - strand at 187.480 kb on + strand at 187.517 kb on - strand at 187.660 kb on - strand, within HMPREF1058_RS07575 at 187.666 kb on + strand at 187.667 kb on - strand, within HMPREF1058_RS07575 at 187.703 kb on - strand, within HMPREF1058_RS07575 at 187.803 kb on + strand, within HMPREF1058_RS07575 at 187.903 kb on - strand, within HMPREF1058_RS07575 at 187.947 kb on + strand, within HMPREF1058_RS07575 at 187.948 kb on - strand at 188.031 kb on - strand, within HMPREF1058_RS07575 at 188.043 kb on + strand, within HMPREF1058_RS07575 at 188.044 kb on - strand, within HMPREF1058_RS07575 at 188.188 kb on - strand, within HMPREF1058_RS07575 at 188.192 kb on + strand, within HMPREF1058_RS07575 at 188.193 kb on - strand, within HMPREF1058_RS07575 at 188.194 kb on + strand, within HMPREF1058_RS07575 at 188.195 kb on - strand at 188.255 kb on - strand, within HMPREF1058_RS07575 at 188.280 kb on - strand at 188.338 kb on - strand at 188.338 kb on - strand at 188.374 kb on - strand at 188.385 kb on - strand at 188.385 kb on - strand at 188.476 kb on - strand at 188.482 kb on - strand at 188.504 kb on - strand at 188.536 kb on - strand, within HMPREF1058_RS07570 at 188.538 kb on - strand, within HMPREF1058_RS07570 at 188.541 kb on + strand, within HMPREF1058_RS07570 at 188.542 kb on - strand, within HMPREF1058_RS07570 at 188.564 kb on + strand, within HMPREF1058_RS07570 at 188.565 kb on - strand, within HMPREF1058_RS07570 at 188.579 kb on - strand, within HMPREF1058_RS07570 at 188.579 kb on - strand, within HMPREF1058_RS07570 at 188.629 kb on + strand, within HMPREF1058_RS07570 at 188.636 kb on - strand at 188.641 kb on - strand, within HMPREF1058_RS07570 at 188.815 kb on + strand, within HMPREF1058_RS07570 at 188.873 kb on + strand, within HMPREF1058_RS07570 at 188.873 kb on + strand, within HMPREF1058_RS07570 at 188.874 kb on - strand, within HMPREF1058_RS07570 at 188.883 kb on + strand, within HMPREF1058_RS07570 at 188.884 kb on - strand, within HMPREF1058_RS07570 at 188.918 kb on + strand, within HMPREF1058_RS07570 at 188.944 kb on - strand, within HMPREF1058_RS07570 at 188.944 kb on - strand, within HMPREF1058_RS07570 at 188.945 kb on + strand, within HMPREF1058_RS07570 at 188.967 kb on + strand, within HMPREF1058_RS07570 at 188.987 kb on - strand, within HMPREF1058_RS07570 at 189.165 kb on - strand, within HMPREF1058_RS07570 at 189.245 kb on + strand, within HMPREF1058_RS07570 at 189.292 kb on - strand at 189.292 kb on - strand, within HMPREF1058_RS07570 at 189.292 kb on - strand, within HMPREF1058_RS07570 at 189.292 kb on - strand, within HMPREF1058_RS07570 at 189.296 kb on - strand, within HMPREF1058_RS07570 at 189.298 kb on - strand, within HMPREF1058_RS07570 at 189.308 kb on - strand, within HMPREF1058_RS07570
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 187,264 - -1.7 187,382 - +0.8 187,389 - +0.6 187,480 + -0.2 187,517 - -0.5 187,660 - HMPREF1058_RS07575 0.20 -2.1 187,666 + -0.1 187,667 - HMPREF1058_RS07575 0.21 -3.7 187,703 - HMPREF1058_RS07575 0.25 -0.8 187,803 + HMPREF1058_RS07575 0.36 +0.9 187,903 - HMPREF1058_RS07575 0.48 -4.0 187,947 + HMPREF1058_RS07575 0.53 -0.1 187,948 - -2.4 188,031 - HMPREF1058_RS07575 0.62 -1.9 188,043 + HMPREF1058_RS07575 0.64 -1.1 188,044 - HMPREF1058_RS07575 0.64 -2.4 188,188 - HMPREF1058_RS07575 0.80 -4.0 188,192 + HMPREF1058_RS07575 0.80 -0.1 188,193 - HMPREF1058_RS07575 0.80 -2.4 188,194 + HMPREF1058_RS07575 0.81 -1.1 188,195 - -1.1 188,255 - HMPREF1058_RS07575 0.87 -2.1 188,280 - -2.1 188,338 - -3.5 188,338 - -0.1 188,374 - -0.1 188,385 - +0.3 188,385 - -0.4 188,476 - -1.7 188,482 - -2.3 188,504 - +0.7 188,536 - HMPREF1058_RS07570 0.12 +0.1 188,538 - HMPREF1058_RS07570 0.12 -0.3 188,541 + HMPREF1058_RS07570 0.13 -2.7 188,542 - HMPREF1058_RS07570 0.13 -0.6 188,564 + HMPREF1058_RS07570 0.14 -3.0 188,565 - HMPREF1058_RS07570 0.15 -1.2 188,579 - HMPREF1058_RS07570 0.16 -0.4 188,579 - HMPREF1058_RS07570 0.16 +3.2 188,629 + HMPREF1058_RS07570 0.20 -0.1 188,636 - +1.7 188,641 - HMPREF1058_RS07570 0.21 -2.2 188,815 + HMPREF1058_RS07570 0.35 -1.1 188,873 + HMPREF1058_RS07570 0.40 -4.3 188,873 + HMPREF1058_RS07570 0.40 -1.7 188,874 - HMPREF1058_RS07570 0.40 -2.2 188,883 + HMPREF1058_RS07570 0.40 -4.2 188,884 - HMPREF1058_RS07570 0.40 -1.3 188,918 + HMPREF1058_RS07570 0.43 -1.4 188,944 - HMPREF1058_RS07570 0.45 -1.7 188,944 - HMPREF1058_RS07570 0.45 -0.1 188,945 + HMPREF1058_RS07570 0.45 -1.1 188,967 + HMPREF1058_RS07570 0.47 -1.1 188,987 - HMPREF1058_RS07570 0.49 -0.9 189,165 - HMPREF1058_RS07570 0.63 -3.7 189,245 + HMPREF1058_RS07570 0.70 -2.4 189,292 - -0.1 189,292 - HMPREF1058_RS07570 0.74 -0.3 189,292 - HMPREF1058_RS07570 0.74 -2.1 189,292 - HMPREF1058_RS07570 0.74 -0.5 189,296 - HMPREF1058_RS07570 0.74 +1.0 189,298 - HMPREF1058_RS07570 0.74 -0.8 189,308 - HMPREF1058_RS07570 0.75 +1.2
Or see this region's nucleotide sequence