Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07395

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07400 and HMPREF1058_RS07395 are separated by 16 nucleotidesHMPREF1058_RS07395 and HMPREF1058_RS07390 are separated by 186 nucleotides HMPREF1058_RS07400: HMPREF1058_RS07400 - glycoside hydrolase family 2 protein, at 237,525 to 240,092 _RS07400 HMPREF1058_RS07395: HMPREF1058_RS07395 - family 20 glycosylhydrolase, at 240,109 to 242,433 _RS07395 HMPREF1058_RS07390: HMPREF1058_RS07390 - cyclically-permuted mutarotase family protein, at 242,620 to 243,747 _RS07390 Position (kb) 240 241 242 243Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 239.320 kb on - strand, within HMPREF1058_RS07400at 239.322 kb on + strand, within HMPREF1058_RS07400at 239.325 kb on - strand, within HMPREF1058_RS07400at 239.356 kb on - strand, within HMPREF1058_RS07400at 239.356 kb on - strand, within HMPREF1058_RS07400at 239.430 kb on - strand, within HMPREF1058_RS07400at 239.440 kb on + strand, within HMPREF1058_RS07400at 239.443 kb on - strand, within HMPREF1058_RS07400at 239.496 kb on + strand, within HMPREF1058_RS07400at 239.554 kb on + strand, within HMPREF1058_RS07400at 239.594 kb on + strand, within HMPREF1058_RS07400at 239.594 kb on + strand, within HMPREF1058_RS07400at 239.595 kb on - strand, within HMPREF1058_RS07400at 239.716 kb on + strand, within HMPREF1058_RS07400at 239.716 kb on + strand, within HMPREF1058_RS07400at 239.718 kb on + strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.719 kb on - strand, within HMPREF1058_RS07400at 239.723 kb on + strand, within HMPREF1058_RS07400at 240.059 kb on + strandat 240.059 kb on + strandat 240.061 kb on + strandat 240.062 kb on - strandat 240.086 kb on + strandat 240.086 kb on + strandat 240.099 kb on - strandat 240.109 kb on - strandat 240.273 kb on - strandat 240.277 kb on + strandat 240.329 kb on - strandat 240.329 kb on - strandat 240.331 kb on - strandat 240.363 kb on - strandat 240.363 kb on - strand, within HMPREF1058_RS07395at 240.389 kb on + strand, within HMPREF1058_RS07395at 240.494 kb on - strand, within HMPREF1058_RS07395at 240.519 kb on + strand, within HMPREF1058_RS07395at 240.633 kb on - strand, within HMPREF1058_RS07395at 240.652 kb on - strand, within HMPREF1058_RS07395at 240.755 kb on + strand, within HMPREF1058_RS07395at 240.817 kb on + strand, within HMPREF1058_RS07395at 240.882 kb on + strand, within HMPREF1058_RS07395at 240.882 kb on + strand, within HMPREF1058_RS07395at 240.903 kb on + strand, within HMPREF1058_RS07395at 240.904 kb on - strand, within HMPREF1058_RS07395at 241.086 kb on + strandat 241.086 kb on + strand, within HMPREF1058_RS07395at 241.095 kb on - strand, within HMPREF1058_RS07395at 241.152 kb on + strand, within HMPREF1058_RS07395at 241.163 kb on + strand, within HMPREF1058_RS07395at 241.164 kb on - strand, within HMPREF1058_RS07395at 241.314 kb on - strand, within HMPREF1058_RS07395at 241.341 kb on + strand, within HMPREF1058_RS07395at 241.342 kb on - strand, within HMPREF1058_RS07395at 241.370 kb on + strand, within HMPREF1058_RS07395at 241.371 kb on - strand, within HMPREF1058_RS07395at 241.391 kb on - strand, within HMPREF1058_RS07395at 241.453 kb on + strand, within HMPREF1058_RS07395at 241.453 kb on + strand, within HMPREF1058_RS07395at 241.454 kb on - strand, within HMPREF1058_RS07395at 241.454 kb on - strand, within HMPREF1058_RS07395at 241.475 kb on - strand, within HMPREF1058_RS07395at 241.475 kb on - strand, within HMPREF1058_RS07395at 241.476 kb on + strand, within HMPREF1058_RS07395at 241.476 kb on + strand, within HMPREF1058_RS07395at 241.476 kb on + strand, within HMPREF1058_RS07395at 241.476 kb on + strand, within HMPREF1058_RS07395at 241.477 kb on - strand, within HMPREF1058_RS07395at 241.477 kb on - strand, within HMPREF1058_RS07395at 241.480 kb on + strand, within HMPREF1058_RS07395at 241.523 kb on - strand, within HMPREF1058_RS07395at 241.547 kb on + strand, within HMPREF1058_RS07395at 241.586 kb on - strand, within HMPREF1058_RS07395at 241.685 kb on + strand, within HMPREF1058_RS07395at 241.704 kb on + strand, within HMPREF1058_RS07395at 241.705 kb on - strand, within HMPREF1058_RS07395at 241.708 kb on + strand, within HMPREF1058_RS07395at 241.710 kb on + strand, within HMPREF1058_RS07395at 241.714 kb on + strand, within HMPREF1058_RS07395at 241.715 kb on - strand, within HMPREF1058_RS07395at 241.745 kb on + strand, within HMPREF1058_RS07395at 241.746 kb on - strand, within HMPREF1058_RS07395at 241.782 kb on + strand, within HMPREF1058_RS07395at 241.803 kb on + strand, within HMPREF1058_RS07395at 241.803 kb on + strandat 241.813 kb on + strand, within HMPREF1058_RS07395at 241.814 kb on - strand, within HMPREF1058_RS07395at 241.817 kb on - strand, within HMPREF1058_RS07395at 241.956 kb on + strand, within HMPREF1058_RS07395at 241.965 kb on + strand, within HMPREF1058_RS07395at 241.969 kb on - strand, within HMPREF1058_RS07395at 241.983 kb on + strand, within HMPREF1058_RS07395at 241.984 kb on - strand, within HMPREF1058_RS07395at 242.058 kb on + strand, within HMPREF1058_RS07395at 242.059 kb on - strand, within HMPREF1058_RS07395at 242.059 kb on - strand, within HMPREF1058_RS07395at 242.063 kb on - strand, within HMPREF1058_RS07395at 242.064 kb on + strand, within HMPREF1058_RS07395at 242.064 kb on + strand, within HMPREF1058_RS07395at 242.112 kb on + strand, within HMPREF1058_RS07395at 242.158 kb on - strand, within HMPREF1058_RS07395at 242.301 kb on + strandat 242.301 kb on + strandat 242.302 kb on - strandat 242.302 kb on - strandat 242.352 kb on - strandat 242.362 kb on - strandat 242.434 kb on + strandat 242.435 kb on - strandat 242.439 kb on - strandat 242.441 kb on - strandat 242.474 kb on - strandat 242.474 kb on - strandat 242.518 kb on + strandat 242.597 kb on - strandat 242.634 kb on - strandat 242.634 kb on - strandat 242.774 kb on + strand, within HMPREF1058_RS07390at 242.777 kb on - strand, within HMPREF1058_RS07390at 242.821 kb on - strand, within HMPREF1058_RS07390at 242.832 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.876 kb on + strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.877 kb on - strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.878 kb on + strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 242.879 kb on - strand, within HMPREF1058_RS07390at 243.086 kb on + strand, within HMPREF1058_RS07390at 243.086 kb on + strand, within HMPREF1058_RS07390at 243.090 kb on + strand, within HMPREF1058_RS07390at 243.091 kb on - strand, within HMPREF1058_RS07390at 243.116 kb on + strand, within HMPREF1058_RS07390at 243.131 kb on - strand, within HMPREF1058_RS07390at 243.131 kb on - strand, within HMPREF1058_RS07390at 243.132 kb on + strand, within HMPREF1058_RS07390at 243.132 kb on + strandat 243.133 kb on - strand, within HMPREF1058_RS07390at 243.133 kb on - strand, within HMPREF1058_RS07390at 243.176 kb on - strand, within HMPREF1058_RS07390at 243.343 kb on + strand, within HMPREF1058_RS07390at 243.344 kb on - strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.345 kb on + strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.346 kb on - strand, within HMPREF1058_RS07390at 243.350 kb on - strand, within HMPREF1058_RS07390at 243.350 kb on - strand, within HMPREF1058_RS07390

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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239,320 - HMPREF1058_RS07400 0.70 -1.9
239,322 + HMPREF1058_RS07400 0.70 -3.2
239,325 - HMPREF1058_RS07400 0.70 -3.1
239,356 - HMPREF1058_RS07400 0.71 -2.1
239,356 - HMPREF1058_RS07400 0.71 -2.9
239,430 - HMPREF1058_RS07400 0.74 -2.6
239,440 + HMPREF1058_RS07400 0.75 -2.4
239,443 - HMPREF1058_RS07400 0.75 -1.9
239,496 + HMPREF1058_RS07400 0.77 -1.5
239,554 + HMPREF1058_RS07400 0.79 -1.0
239,594 + HMPREF1058_RS07400 0.81 -2.4
239,594 + HMPREF1058_RS07400 0.81 -1.5
239,595 - HMPREF1058_RS07400 0.81 -4.2
239,716 + HMPREF1058_RS07400 0.85 -1.6
239,716 + HMPREF1058_RS07400 0.85 -0.4
239,718 + HMPREF1058_RS07400 0.85 -1.7
239,719 - HMPREF1058_RS07400 0.85 -1.7
239,719 - HMPREF1058_RS07400 0.85 -2.4
239,719 - HMPREF1058_RS07400 0.85 -4.5
239,719 - HMPREF1058_RS07400 0.85 -1.7
239,719 - HMPREF1058_RS07400 0.85 -1.7
239,719 - HMPREF1058_RS07400 0.85 -2.9
239,723 + HMPREF1058_RS07400 0.86 -1.3
240,059 + +0.2
240,059 + -1.8
240,061 + -0.3
240,062 - -4.2
240,086 + +2.9
240,086 + +0.8
240,099 - -1.1
240,109 - -1.1
240,273 - -4.1
240,277 + -2.1
240,329 - -2.6
240,329 - -2.4
240,331 - -4.0
240,363 - -1.1
240,363 - HMPREF1058_RS07395 0.11 -3.6
240,389 + HMPREF1058_RS07395 0.12 -4.1
240,494 - HMPREF1058_RS07395 0.17 -1.1
240,519 + HMPREF1058_RS07395 0.18 -2.4
240,633 - HMPREF1058_RS07395 0.23 -2.4
240,652 - HMPREF1058_RS07395 0.23 -1.1
240,755 + HMPREF1058_RS07395 0.28 -2.1
240,817 + HMPREF1058_RS07395 0.30 -2.1
240,882 + HMPREF1058_RS07395 0.33 -1.6
240,882 + HMPREF1058_RS07395 0.33 -3.1
240,903 + HMPREF1058_RS07395 0.34 -5.2
240,904 - HMPREF1058_RS07395 0.34 -1.6
241,086 + -1.1
241,086 + HMPREF1058_RS07395 0.42 -2.4
241,095 - HMPREF1058_RS07395 0.42 -0.1
241,152 + HMPREF1058_RS07395 0.45 -2.4
241,163 + HMPREF1058_RS07395 0.45 -1.1
241,164 - HMPREF1058_RS07395 0.45 -2.6
241,314 - HMPREF1058_RS07395 0.52 -2.9
241,341 + HMPREF1058_RS07395 0.53 -4.0
241,342 - HMPREF1058_RS07395 0.53 -2.6
241,370 + HMPREF1058_RS07395 0.54 -1.9
241,371 - HMPREF1058_RS07395 0.54 -3.8
241,391 - HMPREF1058_RS07395 0.55 -2.1
241,453 + HMPREF1058_RS07395 0.58 -1.1
241,453 + HMPREF1058_RS07395 0.58 -1.1
241,454 - HMPREF1058_RS07395 0.58 -3.4
241,454 - HMPREF1058_RS07395 0.58 -1.6
241,475 - HMPREF1058_RS07395 0.59 -3.5
241,475 - HMPREF1058_RS07395 0.59 -2.1
241,476 + HMPREF1058_RS07395 0.59 -2.4
241,476 + HMPREF1058_RS07395 0.59 -0.9
241,476 + HMPREF1058_RS07395 0.59 -4.5
241,476 + HMPREF1058_RS07395 0.59 -1.1
241,477 - HMPREF1058_RS07395 0.59 -2.2
241,477 - HMPREF1058_RS07395 0.59 -2.4
241,480 + HMPREF1058_RS07395 0.59 -2.8
241,523 - HMPREF1058_RS07395 0.61 -5.4
241,547 + HMPREF1058_RS07395 0.62 -1.6
241,586 - HMPREF1058_RS07395 0.64 -5.5
241,685 + HMPREF1058_RS07395 0.68 -2.9
241,704 + HMPREF1058_RS07395 0.69 -0.9
241,705 - HMPREF1058_RS07395 0.69 -3.1
241,708 + HMPREF1058_RS07395 0.69 -0.1
241,710 + HMPREF1058_RS07395 0.69 -2.6
241,714 + HMPREF1058_RS07395 0.69 -2.4
241,715 - HMPREF1058_RS07395 0.69 -3.6
241,745 + HMPREF1058_RS07395 0.70 -3.2
241,746 - HMPREF1058_RS07395 0.70 -4.2
241,782 + HMPREF1058_RS07395 0.72 +2.5
241,803 + HMPREF1058_RS07395 0.73 -1.3
241,803 + -0.1
241,813 + HMPREF1058_RS07395 0.73 -1.2
241,814 - HMPREF1058_RS07395 0.73 -2.4
241,817 - HMPREF1058_RS07395 0.73 -2.9
241,956 + HMPREF1058_RS07395 0.79 -0.7
241,965 + HMPREF1058_RS07395 0.80 +0.1
241,969 - HMPREF1058_RS07395 0.80 -3.1
241,983 + HMPREF1058_RS07395 0.81 -0.9
241,984 - HMPREF1058_RS07395 0.81 -3.6
242,058 + HMPREF1058_RS07395 0.84 -0.5
242,059 - HMPREF1058_RS07395 0.84 -4.2
242,059 - HMPREF1058_RS07395 0.84 -4.1
242,063 - HMPREF1058_RS07395 0.84 -2.9
242,064 + HMPREF1058_RS07395 0.84 -1.7
242,064 + HMPREF1058_RS07395 0.84 -0.5
242,112 + HMPREF1058_RS07395 0.86 -0.7
242,158 - HMPREF1058_RS07395 0.88 -4.5
242,301 + -1.3
242,301 + -0.2
242,302 - -3.7
242,302 - -1.1
242,352 - -3.4
242,362 - -4.4
242,434 + -0.5
242,435 - -3.1
242,439 - -2.1
242,441 - -1.7
242,474 - -4.5
242,474 - -4.5
242,518 + -1.5
242,597 - -0.1
242,634 - -3.5
242,634 - -1.7
242,774 + HMPREF1058_RS07390 0.14 -1.7
242,777 - HMPREF1058_RS07390 0.14 -2.4
242,821 - HMPREF1058_RS07390 0.18 -4.3
242,832 + HMPREF1058_RS07390 0.19 -1.7
242,876 + HMPREF1058_RS07390 0.23 -2.1
242,876 + HMPREF1058_RS07390 0.23 -2.1
242,876 + HMPREF1058_RS07390 0.23 -4.3
242,876 + HMPREF1058_RS07390 0.23 -1.3
242,877 - HMPREF1058_RS07390 0.23 -4.7
242,877 - HMPREF1058_RS07390 0.23 -4.5
242,877 - HMPREF1058_RS07390 0.23 -1.1
242,878 + HMPREF1058_RS07390 0.23 -2.7
242,878 + HMPREF1058_RS07390 0.23 -4.5
242,878 + HMPREF1058_RS07390 0.23 -0.8
242,879 - HMPREF1058_RS07390 0.23 -1.7
242,879 - HMPREF1058_RS07390 0.23 -4.0
242,879 - HMPREF1058_RS07390 0.23 -2.1
243,086 + HMPREF1058_RS07390 0.41 -2.5
243,086 + HMPREF1058_RS07390 0.41 -3.9
243,090 + HMPREF1058_RS07390 0.42 -1.7
243,091 - HMPREF1058_RS07390 0.42 -1.7
243,116 + HMPREF1058_RS07390 0.44 -2.4
243,131 - HMPREF1058_RS07390 0.45 -1.1
243,131 - HMPREF1058_RS07390 0.45 -3.9
243,132 + HMPREF1058_RS07390 0.45 -1.1
243,132 + -1.1
243,133 - HMPREF1058_RS07390 0.45 -2.1
243,133 - HMPREF1058_RS07390 0.45 -1.1
243,176 - HMPREF1058_RS07390 0.49 -1.1
243,343 + HMPREF1058_RS07390 0.64 -1.7
243,344 - HMPREF1058_RS07390 0.64 -3.2
243,345 + HMPREF1058_RS07390 0.64 -0.1
243,345 + HMPREF1058_RS07390 0.64 -2.1
243,345 + HMPREF1058_RS07390 0.64 -3.4
243,346 - HMPREF1058_RS07390 0.64 -1.7
243,346 - HMPREF1058_RS07390 0.64 -0.1
243,346 - HMPREF1058_RS07390 0.64 -4.6
243,346 - HMPREF1058_RS07390 0.64 -5.2
243,346 - HMPREF1058_RS07390 0.64 -4.6
243,346 - HMPREF1058_RS07390 0.64 -2.1
243,350 - HMPREF1058_RS07390 0.65 -4.0
243,350 - HMPREF1058_RS07390 0.65 -2.7

Or see this region's nucleotide sequence