Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07380

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07385 and HMPREF1058_RS07380 are separated by 26 nucleotidesHMPREF1058_RS07380 and HMPREF1058_RS07375 are separated by 2 nucleotides HMPREF1058_RS07385: HMPREF1058_RS07385 - family 20 glycosylhydrolase, at 243,744 to 245,798 _RS07385 HMPREF1058_RS07380: HMPREF1058_RS07380 - GH92 family glycosyl hydrolase, at 245,825 to 248,077 _RS07380 HMPREF1058_RS07375: HMPREF1058_RS07375 - DUF4982 domain-containing protein, at 248,080 to 250,584 _RS07375 Position (kb) 245 246 247 248 249Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 244.838 kb on + strand, within HMPREF1058_RS07385at 244.883 kb on + strand, within HMPREF1058_RS07385at 244.955 kb on + strand, within HMPREF1058_RS07385at 244.955 kb on + strand, within HMPREF1058_RS07385at 244.956 kb on - strand, within HMPREF1058_RS07385at 244.956 kb on - strand, within HMPREF1058_RS07385at 245.032 kb on - strand, within HMPREF1058_RS07385at 245.061 kb on - strand, within HMPREF1058_RS07385at 245.114 kb on - strand, within HMPREF1058_RS07385at 245.136 kb on + strand, within HMPREF1058_RS07385at 245.229 kb on + strand, within HMPREF1058_RS07385at 245.229 kb on + strand, within HMPREF1058_RS07385at 245.229 kb on + strand, within HMPREF1058_RS07385at 245.315 kb on - strand, within HMPREF1058_RS07385at 245.363 kb on + strand, within HMPREF1058_RS07385at 245.394 kb on + strand, within HMPREF1058_RS07385at 245.435 kb on - strand, within HMPREF1058_RS07385at 245.460 kb on + strandat 245.661 kb on - strandat 245.661 kb on - strandat 245.727 kb on + strandat 245.728 kb on - strandat 245.797 kb on - strandat 245.806 kb on + strandat 245.809 kb on - strandat 245.821 kb on + strandat 245.822 kb on - strandat 245.901 kb on + strandat 245.906 kb on + strandat 245.906 kb on + strandat 245.910 kb on + strandat 245.911 kb on - strandat 246.071 kb on - strand, within HMPREF1058_RS07380at 246.071 kb on - strand, within HMPREF1058_RS07380at 246.071 kb on - strand, within HMPREF1058_RS07380at 246.074 kb on + strand, within HMPREF1058_RS07380at 246.075 kb on - strand, within HMPREF1058_RS07380at 246.139 kb on - strand, within HMPREF1058_RS07380at 246.178 kb on + strand, within HMPREF1058_RS07380at 246.195 kb on - strand, within HMPREF1058_RS07380at 246.227 kb on - strand, within HMPREF1058_RS07380at 246.234 kb on + strand, within HMPREF1058_RS07380at 246.245 kb on + strand, within HMPREF1058_RS07380at 246.246 kb on - strand, within HMPREF1058_RS07380at 246.286 kb on + strand, within HMPREF1058_RS07380at 246.557 kb on + strand, within HMPREF1058_RS07380at 246.557 kb on + strand, within HMPREF1058_RS07380at 246.557 kb on + strand, within HMPREF1058_RS07380at 246.566 kb on + strand, within HMPREF1058_RS07380at 246.588 kb on + strand, within HMPREF1058_RS07380at 246.603 kb on + strand, within HMPREF1058_RS07380at 246.604 kb on - strand, within HMPREF1058_RS07380at 246.604 kb on - strand, within HMPREF1058_RS07380at 246.678 kb on + strandat 246.819 kb on + strand, within HMPREF1058_RS07380at 246.824 kb on + strand, within HMPREF1058_RS07380at 246.825 kb on - strandat 246.837 kb on + strand, within HMPREF1058_RS07380at 246.837 kb on - strand, within HMPREF1058_RS07380at 246.874 kb on - strand, within HMPREF1058_RS07380at 246.956 kb on - strand, within HMPREF1058_RS07380at 246.960 kb on - strand, within HMPREF1058_RS07380at 246.990 kb on + strand, within HMPREF1058_RS07380at 246.991 kb on - strand, within HMPREF1058_RS07380at 247.037 kb on + strand, within HMPREF1058_RS07380at 247.037 kb on + strand, within HMPREF1058_RS07380at 247.038 kb on - strand, within HMPREF1058_RS07380at 247.073 kb on + strand, within HMPREF1058_RS07380at 247.172 kb on + strand, within HMPREF1058_RS07380at 247.173 kb on - strand, within HMPREF1058_RS07380at 247.184 kb on + strand, within HMPREF1058_RS07380at 247.185 kb on - strand, within HMPREF1058_RS07380at 247.241 kb on + strand, within HMPREF1058_RS07380at 247.241 kb on + strand, within HMPREF1058_RS07380at 247.242 kb on - strand, within HMPREF1058_RS07380at 247.242 kb on - strand, within HMPREF1058_RS07380at 247.243 kb on + strand, within HMPREF1058_RS07380at 247.243 kb on + strand, within HMPREF1058_RS07380at 247.244 kb on - strand, within HMPREF1058_RS07380at 247.244 kb on - strand, within HMPREF1058_RS07380at 247.282 kb on + strand, within HMPREF1058_RS07380at 247.350 kb on + strand, within HMPREF1058_RS07380at 247.412 kb on - strand, within HMPREF1058_RS07380at 247.445 kb on - strand, within HMPREF1058_RS07380at 247.536 kb on - strand, within HMPREF1058_RS07380at 247.738 kb on + strand, within HMPREF1058_RS07380at 247.808 kb on - strand, within HMPREF1058_RS07380at 247.858 kb on + strandat 247.858 kb on + strandat 247.959 kb on - strandat 247.959 kb on - strandat 247.960 kb on + strandat 247.961 kb on - strandat 247.961 kb on - strandat 248.047 kb on + strandat 248.048 kb on - strandat 248.049 kb on + strandat 248.079 kb on + strandat 248.080 kb on - strandat 248.080 kb on - strandat 248.080 kb on - strandat 248.151 kb on - strandat 248.226 kb on + strandat 248.227 kb on - strandat 248.235 kb on + strandat 248.235 kb on + strandat 248.275 kb on + strandat 248.362 kb on - strand, within HMPREF1058_RS07375at 248.451 kb on - strand, within HMPREF1058_RS07375at 248.533 kb on + strand, within HMPREF1058_RS07375at 248.534 kb on - strand, within HMPREF1058_RS07375at 248.670 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.695 kb on + strand, within HMPREF1058_RS07375at 248.696 kb on - strand, within HMPREF1058_RS07375at 248.696 kb on - strand, within HMPREF1058_RS07375at 248.696 kb on - strand, within HMPREF1058_RS07375at 248.701 kb on - strand, within HMPREF1058_RS07375at 248.772 kb on + strand, within HMPREF1058_RS07375at 248.772 kb on + strand, within HMPREF1058_RS07375at 248.791 kb on - strand, within HMPREF1058_RS07375at 248.954 kb on - strand, within HMPREF1058_RS07375at 248.964 kb on + strand, within HMPREF1058_RS07375at 248.982 kb on + strand, within HMPREF1058_RS07375at 248.982 kb on + strand, within HMPREF1058_RS07375at 248.983 kb on - strand, within HMPREF1058_RS07375at 248.983 kb on - strand, within HMPREF1058_RS07375at 248.983 kb on - strand, within HMPREF1058_RS07375at 249.068 kb on + strand, within HMPREF1058_RS07375

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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244,838 + HMPREF1058_RS07385 0.53 -1.7
244,883 + HMPREF1058_RS07385 0.55 -1.7
244,955 + HMPREF1058_RS07385 0.59 -0.4
244,955 + HMPREF1058_RS07385 0.59 -2.5
244,956 - HMPREF1058_RS07385 0.59 -1.4
244,956 - HMPREF1058_RS07385 0.59 -4.2
245,032 - HMPREF1058_RS07385 0.63 -3.7
245,061 - HMPREF1058_RS07385 0.64 -2.7
245,114 - HMPREF1058_RS07385 0.67 -2.9
245,136 + HMPREF1058_RS07385 0.68 -0.7
245,229 + HMPREF1058_RS07385 0.72 -0.1
245,229 + HMPREF1058_RS07385 0.72 -1.1
245,229 + HMPREF1058_RS07385 0.72 -1.8
245,315 - HMPREF1058_RS07385 0.76 -2.3
245,363 + HMPREF1058_RS07385 0.79 -0.7
245,394 + HMPREF1058_RS07385 0.80 -1.1
245,435 - HMPREF1058_RS07385 0.82 -5.2
245,460 + -1.1
245,661 - -0.1
245,661 - -3.9
245,727 + -2.7
245,728 - -0.1
245,797 - -2.7
245,806 + +0.3
245,809 - -3.8
245,821 + -4.4
245,822 - -3.2
245,901 + -4.9
245,906 + -4.4
245,906 + -2.7
245,910 + -0.1
245,911 - -3.8
246,071 - HMPREF1058_RS07380 0.11 -3.9
246,071 - HMPREF1058_RS07380 0.11 -2.4
246,071 - HMPREF1058_RS07380 0.11 -4.7
246,074 + HMPREF1058_RS07380 0.11 -3.5
246,075 - HMPREF1058_RS07380 0.11 -2.7
246,139 - HMPREF1058_RS07380 0.14 -2.9
246,178 + HMPREF1058_RS07380 0.16 -4.7
246,195 - HMPREF1058_RS07380 0.16 -4.2
246,227 - HMPREF1058_RS07380 0.18 -3.2
246,234 + HMPREF1058_RS07380 0.18 -4.0
246,245 + HMPREF1058_RS07380 0.19 -1.7
246,246 - HMPREF1058_RS07380 0.19 -0.1
246,286 + HMPREF1058_RS07380 0.20 -3.8
246,557 + HMPREF1058_RS07380 0.32 -4.5
246,557 + HMPREF1058_RS07380 0.32 -1.7
246,557 + HMPREF1058_RS07380 0.32 -2.1
246,566 + HMPREF1058_RS07380 0.33 -4.8
246,588 + HMPREF1058_RS07380 0.34 -3.4
246,603 + HMPREF1058_RS07380 0.35 -2.1
246,604 - HMPREF1058_RS07380 0.35 -0.1
246,604 - HMPREF1058_RS07380 0.35 -4.5
246,678 + -0.1
246,819 + HMPREF1058_RS07380 0.44 -3.4
246,824 + HMPREF1058_RS07380 0.44 -5.1
246,825 - -1.1
246,837 + HMPREF1058_RS07380 0.45 -2.1
246,837 - HMPREF1058_RS07380 0.45 -1.7
246,874 - HMPREF1058_RS07380 0.47 -2.9
246,956 - HMPREF1058_RS07380 0.50 -1.1
246,960 - HMPREF1058_RS07380 0.50 -1.7
246,990 + HMPREF1058_RS07380 0.52 -2.9
246,991 - HMPREF1058_RS07380 0.52 -4.2
247,037 + HMPREF1058_RS07380 0.54 -3.4
247,037 + HMPREF1058_RS07380 0.54 -4.7
247,038 - HMPREF1058_RS07380 0.54 -5.3
247,073 + HMPREF1058_RS07380 0.55 -1.7
247,172 + HMPREF1058_RS07380 0.60 -1.7
247,173 - HMPREF1058_RS07380 0.60 -2.4
247,184 + HMPREF1058_RS07380 0.60 -2.9
247,185 - HMPREF1058_RS07380 0.60 -0.1
247,241 + HMPREF1058_RS07380 0.63 -2.1
247,241 + HMPREF1058_RS07380 0.63 -4.1
247,242 - HMPREF1058_RS07380 0.63 -2.4
247,242 - HMPREF1058_RS07380 0.63 -2.7
247,243 + HMPREF1058_RS07380 0.63 -1.7
247,243 + HMPREF1058_RS07380 0.63 -1.7
247,244 - HMPREF1058_RS07380 0.63 -2.4
247,244 - HMPREF1058_RS07380 0.63 -2.1
247,282 + HMPREF1058_RS07380 0.65 -4.8
247,350 + HMPREF1058_RS07380 0.68 -2.4
247,412 - HMPREF1058_RS07380 0.70 -2.9
247,445 - HMPREF1058_RS07380 0.72 -3.9
247,536 - HMPREF1058_RS07380 0.76 -3.2
247,738 + HMPREF1058_RS07380 0.85 -0.1
247,808 - HMPREF1058_RS07380 0.88 -2.4
247,858 + -0.1
247,858 + -3.2
247,959 - -2.7
247,959 - -0.1
247,960 + -3.5
247,961 - -2.4
247,961 - -3.7
248,047 + -1.4
248,048 - -3.5
248,049 + -1.8
248,079 + -0.9
248,080 - -0.1
248,080 - -3.2
248,080 - -2.4
248,151 - -0.4
248,226 + -0.1
248,227 - -1.7
248,235 + -1.7
248,235 + -2.4
248,275 + -3.2
248,362 - HMPREF1058_RS07375 0.11 -2.4
248,451 - HMPREF1058_RS07375 0.15 -1.1
248,533 + HMPREF1058_RS07375 0.18 -1.1
248,534 - HMPREF1058_RS07375 0.18 +0.0
248,670 + HMPREF1058_RS07375 0.24 -3.2
248,695 + HMPREF1058_RS07375 0.25 -2.7
248,695 + HMPREF1058_RS07375 0.25 -0.1
248,695 + HMPREF1058_RS07375 0.25 -3.8
248,695 + HMPREF1058_RS07375 0.25 -3.9
248,696 - HMPREF1058_RS07375 0.25 -2.1
248,696 - HMPREF1058_RS07375 0.25 -0.7
248,696 - HMPREF1058_RS07375 0.25 -2.9
248,701 - HMPREF1058_RS07375 0.25 -1.7
248,772 + HMPREF1058_RS07375 0.28 -2.1
248,772 + HMPREF1058_RS07375 0.28 -5.3
248,791 - HMPREF1058_RS07375 0.28 -1.1
248,954 - HMPREF1058_RS07375 0.35 -0.1
248,964 + HMPREF1058_RS07375 0.35 -2.3
248,982 + HMPREF1058_RS07375 0.36 -4.8
248,982 + HMPREF1058_RS07375 0.36 -4.3
248,983 - HMPREF1058_RS07375 0.36 -0.1
248,983 - HMPREF1058_RS07375 0.36 -3.2
248,983 - HMPREF1058_RS07375 0.36 -2.1
249,068 + HMPREF1058_RS07375 0.39 -1.3

Or see this region's nucleotide sequence