Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07310

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS07315 and HMPREF1058_RS07310 are separated by 175 nucleotidesHMPREF1058_RS07310 and HMPREF1058_RS07305 are separated by 3 nucleotidesHMPREF1058_RS07305 and HMPREF1058_RS07300 are separated by 45 nucleotides HMPREF1058_RS07315: HMPREF1058_RS07315 - TIGR02757 family protein, at 263,739 to 264,503 _RS07315 HMPREF1058_RS07310: HMPREF1058_RS07310 - glucosamine-6-phosphate deaminase, at 264,679 to 266,667 _RS07310 HMPREF1058_RS07305: HMPREF1058_RS07305 - glucosamine-6-phosphate deaminase, at 266,671 to 267,462 _RS07305 HMPREF1058_RS07300: HMPREF1058_RS07300 - MFS transporter, at 267,508 to 268,743 _RS07300 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 263.697 kb on - strandat 263.701 kb on + strandat 263.702 kb on - strandat 263.704 kb on + strandat 263.705 kb on - strandat 263.706 kb on + strandat 263.735 kb on - strandat 263.775 kb on + strandat 263.775 kb on + strandat 263.836 kb on - strand, within HMPREF1058_RS07315at 263.852 kb on + strand, within HMPREF1058_RS07315at 263.949 kb on - strand, within HMPREF1058_RS07315at 264.126 kb on - strand, within HMPREF1058_RS07315at 264.129 kb on - strand, within HMPREF1058_RS07315at 264.129 kb on - strand, within HMPREF1058_RS07315at 264.130 kb on + strand, within HMPREF1058_RS07315at 264.130 kb on + strand, within HMPREF1058_RS07315at 264.131 kb on - strand, within HMPREF1058_RS07315at 264.132 kb on + strand, within HMPREF1058_RS07315at 264.132 kb on + strand, within HMPREF1058_RS07315at 264.132 kb on + strand, within HMPREF1058_RS07315at 264.133 kb on - strand, within HMPREF1058_RS07315at 264.133 kb on - strand, within HMPREF1058_RS07315at 264.134 kb on + strand, within HMPREF1058_RS07315at 264.134 kb on + strand, within HMPREF1058_RS07315at 264.137 kb on + strand, within HMPREF1058_RS07315at 264.138 kb on - strandat 264.386 kb on + strand, within HMPREF1058_RS07315at 264.395 kb on + strand, within HMPREF1058_RS07315at 264.508 kb on + strandat 264.508 kb on + strandat 264.509 kb on - strandat 264.509 kb on - strandat 264.509 kb on - strandat 264.652 kb on + strandat 264.659 kb on - strandat 264.663 kb on + strandat 264.675 kb on + strandat 264.680 kb on + strandat 264.688 kb on + strandat 264.692 kb on + strandat 264.693 kb on - strandat 264.698 kb on - strandat 264.719 kb on + strandat 264.855 kb on + strandat 265.091 kb on - strand, within HMPREF1058_RS07310at 265.094 kb on - strand, within HMPREF1058_RS07310at 265.158 kb on - strand, within HMPREF1058_RS07310at 265.205 kb on + strand, within HMPREF1058_RS07310at 265.206 kb on - strand, within HMPREF1058_RS07310at 265.206 kb on - strand, within HMPREF1058_RS07310at 265.320 kb on - strand, within HMPREF1058_RS07310at 265.397 kb on - strand, within HMPREF1058_RS07310at 265.397 kb on - strand, within HMPREF1058_RS07310at 265.448 kb on - strand, within HMPREF1058_RS07310at 265.633 kb on + strand, within HMPREF1058_RS07310at 265.653 kb on - strand, within HMPREF1058_RS07310at 265.665 kb on - strand, within HMPREF1058_RS07310at 265.701 kb on - strand, within HMPREF1058_RS07310at 265.701 kb on - strand, within HMPREF1058_RS07310at 265.753 kb on + strand, within HMPREF1058_RS07310at 265.753 kb on + strand, within HMPREF1058_RS07310at 265.753 kb on + strand, within HMPREF1058_RS07310at 265.753 kb on + strand, within HMPREF1058_RS07310at 265.754 kb on - strand, within HMPREF1058_RS07310at 265.849 kb on + strand, within HMPREF1058_RS07310at 265.850 kb on - strand, within HMPREF1058_RS07310at 265.967 kb on + strand, within HMPREF1058_RS07310at 266.131 kb on - strand, within HMPREF1058_RS07310at 266.156 kb on - strand, within HMPREF1058_RS07310at 266.168 kb on - strand, within HMPREF1058_RS07310at 266.168 kb on - strand, within HMPREF1058_RS07310at 266.199 kb on - strand, within HMPREF1058_RS07310at 266.255 kb on - strand, within HMPREF1058_RS07310at 266.290 kb on + strand, within HMPREF1058_RS07310at 266.346 kb on - strand, within HMPREF1058_RS07310at 266.353 kb on + strand, within HMPREF1058_RS07310at 266.369 kb on - strand, within HMPREF1058_RS07310at 266.546 kb on + strandat 266.627 kb on - strandat 266.653 kb on + strandat 266.668 kb on - strandat 267.551 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
remove
263,697 - +0.9
263,701 + +0.6
263,702 - +1.1
263,704 + +0.1
263,705 - +0.6
263,706 + -0.7
263,735 - +1.3
263,775 + +0.5
263,775 + -2.1
263,836 - HMPREF1058_RS07315 0.13 -0.5
263,852 + HMPREF1058_RS07315 0.15 +0.7
263,949 - HMPREF1058_RS07315 0.27 -0.3
264,126 - HMPREF1058_RS07315 0.51 +0.9
264,129 - HMPREF1058_RS07315 0.51 +1.1
264,129 - HMPREF1058_RS07315 0.51 -1.9
264,130 + HMPREF1058_RS07315 0.51 +1.4
264,130 + HMPREF1058_RS07315 0.51 -1.1
264,131 - HMPREF1058_RS07315 0.51 -1.1
264,132 + HMPREF1058_RS07315 0.51 +3.1
264,132 + HMPREF1058_RS07315 0.51 +0.6
264,132 + HMPREF1058_RS07315 0.51 -0.1
264,133 - HMPREF1058_RS07315 0.52 +0.6
264,133 - HMPREF1058_RS07315 0.52 +1.9
264,134 + HMPREF1058_RS07315 0.52 +0.1
264,134 + HMPREF1058_RS07315 0.52 -1.1
264,137 + HMPREF1058_RS07315 0.52 +1.1
264,138 - -0.1
264,386 + HMPREF1058_RS07315 0.85 -1.5
264,395 + HMPREF1058_RS07315 0.86 +1.0
264,508 + -2.6
264,508 + -1.3
264,509 - -0.8
264,509 - -0.8
264,509 - -0.6
264,652 + -1.9
264,659 - -0.7
264,663 + +0.7
264,675 + -1.1
264,680 + -0.6
264,688 + -1.3
264,692 + -2.5
264,693 - -0.9
264,698 - -0.1
264,719 + -1.3
264,855 + -4.2
265,091 - HMPREF1058_RS07310 0.21 -2.4
265,094 - HMPREF1058_RS07310 0.21 -1.8
265,158 - HMPREF1058_RS07310 0.24 -2.4
265,205 + HMPREF1058_RS07310 0.26 -2.5
265,206 - HMPREF1058_RS07310 0.26 -3.2
265,206 - HMPREF1058_RS07310 0.26 -1.9
265,320 - HMPREF1058_RS07310 0.32 -2.4
265,397 - HMPREF1058_RS07310 0.36 -0.8
265,397 - HMPREF1058_RS07310 0.36 -1.5
265,448 - HMPREF1058_RS07310 0.39 -2.4
265,633 + HMPREF1058_RS07310 0.48 -2.0
265,653 - HMPREF1058_RS07310 0.49 -0.0
265,665 - HMPREF1058_RS07310 0.50 -0.0
265,701 - HMPREF1058_RS07310 0.51 -2.6
265,701 - HMPREF1058_RS07310 0.51 -1.0
265,753 + HMPREF1058_RS07310 0.54 -2.0
265,753 + HMPREF1058_RS07310 0.54 -0.0
265,753 + HMPREF1058_RS07310 0.54 -2.0
265,753 + HMPREF1058_RS07310 0.54 -3.0
265,754 - HMPREF1058_RS07310 0.54 -2.0
265,849 + HMPREF1058_RS07310 0.59 -1.5
265,850 - HMPREF1058_RS07310 0.59 +0.4
265,967 + HMPREF1058_RS07310 0.65 -1.8
266,131 - HMPREF1058_RS07310 0.73 -0.6
266,156 - HMPREF1058_RS07310 0.74 -3.4
266,168 - HMPREF1058_RS07310 0.75 -1.0
266,168 - HMPREF1058_RS07310 0.75 -2.6
266,199 - HMPREF1058_RS07310 0.76 -1.7
266,255 - HMPREF1058_RS07310 0.79 -0.2
266,290 + HMPREF1058_RS07310 0.81 -1.0
266,346 - HMPREF1058_RS07310 0.84 -2.9
266,353 + HMPREF1058_RS07310 0.84 -2.5
266,369 - HMPREF1058_RS07310 0.85 -3.5
266,546 + -1.0
266,627 - -1.0
266,653 + -3.5
266,668 - +2.5
267,551 - -1.0

Or see this region's nucleotide sequence