Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07310 and HMPREF1058_RS07305 are separated by 3 nucleotides HMPREF1058_RS07305 and HMPREF1058_RS07300 are separated by 45 nucleotides HMPREF1058_RS07300 and HMPREF1058_RS07295 are separated by 18 nucleotides
HMPREF1058_RS07310: HMPREF1058_RS07310 - glucosamine-6-phosphate deaminase, at 264,679 to 266,667
_RS07310
HMPREF1058_RS07305: HMPREF1058_RS07305 - glucosamine-6-phosphate deaminase, at 266,671 to 267,462
_RS07305
HMPREF1058_RS07300: HMPREF1058_RS07300 - MFS transporter, at 267,508 to 268,743
_RS07300
HMPREF1058_RS07295: HMPREF1058_RS07295 - AGE family epimerase/isomerase, at 268,762 to 269,958
_RS07295
Position (kb) 267
268
269 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 266.546 kb on + strand at 266.627 kb on - strand at 266.653 kb on + strand at 266.668 kb on - strand at 267.551 kb on - strand at 267.733 kb on - strand, within HMPREF1058_RS07300 at 267.773 kb on - strand, within HMPREF1058_RS07300 at 267.838 kb on - strand, within HMPREF1058_RS07300 at 267.988 kb on - strand, within HMPREF1058_RS07300 at 268.064 kb on - strand, within HMPREF1058_RS07300 at 268.166 kb on - strand, within HMPREF1058_RS07300 at 268.248 kb on + strand, within HMPREF1058_RS07300 at 268.248 kb on + strand, within HMPREF1058_RS07300 at 268.276 kb on - strand, within HMPREF1058_RS07300 at 268.392 kb on + strand, within HMPREF1058_RS07300 at 268.394 kb on + strand, within HMPREF1058_RS07300 at 268.445 kb on + strand, within HMPREF1058_RS07300 at 268.446 kb on - strand, within HMPREF1058_RS07300 at 268.446 kb on - strand, within HMPREF1058_RS07300 at 268.446 kb on - strand, within HMPREF1058_RS07300 at 268.486 kb on + strand, within HMPREF1058_RS07300 at 268.486 kb on + strand, within HMPREF1058_RS07300 at 268.506 kb on + strand, within HMPREF1058_RS07300 at 268.702 kb on + strand at 268.703 kb on - strand at 268.750 kb on - strand at 268.750 kb on - strand at 268.806 kb on + strand at 268.807 kb on - strand at 268.807 kb on - strand at 268.940 kb on + strand, within HMPREF1058_RS07295 at 269.000 kb on + strand, within HMPREF1058_RS07295 at 269.064 kb on - strand, within HMPREF1058_RS07295 at 269.191 kb on - strand, within HMPREF1058_RS07295 at 269.232 kb on + strand, within HMPREF1058_RS07295 at 269.452 kb on - strand, within HMPREF1058_RS07295 at 269.482 kb on + strand, within HMPREF1058_RS07295 at 269.483 kb on - strand, within HMPREF1058_RS07295 at 269.657 kb on + strand, within HMPREF1058_RS07295 at 269.662 kb on - strand, within HMPREF1058_RS07295 at 269.695 kb on - strand, within HMPREF1058_RS07295 at 269.701 kb on + strand, within HMPREF1058_RS07295
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 266,546 + -1.0 266,627 - -1.0 266,653 + -3.5 266,668 - +2.5 267,551 - -1.0 267,733 - HMPREF1058_RS07300 0.18 -2.0 267,773 - HMPREF1058_RS07300 0.21 -2.9 267,838 - HMPREF1058_RS07300 0.27 -2.9 267,988 - HMPREF1058_RS07300 0.39 -2.0 268,064 - HMPREF1058_RS07300 0.45 -2.9 268,166 - HMPREF1058_RS07300 0.53 -1.0 268,248 + HMPREF1058_RS07300 0.60 -2.9 268,248 + HMPREF1058_RS07300 0.60 -2.4 268,276 - HMPREF1058_RS07300 0.62 -5.3 268,392 + HMPREF1058_RS07300 0.72 -2.4 268,394 + HMPREF1058_RS07300 0.72 -2.4 268,445 + HMPREF1058_RS07300 0.76 -3.0 268,446 - HMPREF1058_RS07300 0.76 -2.6 268,446 - HMPREF1058_RS07300 0.76 -4.0 268,446 - HMPREF1058_RS07300 0.76 -3.2 268,486 + HMPREF1058_RS07300 0.79 -2.9 268,486 + HMPREF1058_RS07300 0.79 -1.0 268,506 + HMPREF1058_RS07300 0.81 -1.8 268,702 + -2.4 268,703 - -4.4 268,750 - -0.0 268,750 - -0.9 268,806 + -1.6 268,807 - -3.5 268,807 - -4.8 268,940 + HMPREF1058_RS07295 0.15 -5.5 269,000 + HMPREF1058_RS07295 0.20 -0.0 269,064 - HMPREF1058_RS07295 0.25 -1.2 269,191 - HMPREF1058_RS07295 0.36 -0.9 269,232 + HMPREF1058_RS07295 0.39 -2.6 269,452 - HMPREF1058_RS07295 0.58 +0.2 269,482 + HMPREF1058_RS07295 0.60 -3.7 269,483 - HMPREF1058_RS07295 0.60 -0.0 269,657 + HMPREF1058_RS07295 0.75 -0.0 269,662 - HMPREF1058_RS07295 0.75 -1.9 269,695 - HMPREF1058_RS07295 0.78 -0.0 269,701 + HMPREF1058_RS07295 0.78 -1.0
Or see this region's nucleotide sequence