Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07295 and HMPREF1058_RS07290 are separated by 12 nucleotides HMPREF1058_RS07290 and HMPREF1058_RS07285 are separated by 305 nucleotides
HMPREF1058_RS07295: HMPREF1058_RS07295 - AGE family epimerase/isomerase, at 268,762 to 269,958
_RS07295
HMPREF1058_RS07290: HMPREF1058_RS07290 - dihydrodipicolinate synthase family protein, at 269,971 to 270,885
_RS07290
HMPREF1058_RS07285: HMPREF1058_RS07285 - ROK family transcriptional regulator, at 271,191 to 272,396
_RS07285
Position (kb) 269
270
271 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 269.000 kb on + strand, within HMPREF1058_RS07295 at 269.064 kb on - strand, within HMPREF1058_RS07295 at 269.191 kb on - strand, within HMPREF1058_RS07295 at 269.232 kb on + strand, within HMPREF1058_RS07295 at 269.452 kb on - strand, within HMPREF1058_RS07295 at 269.482 kb on + strand, within HMPREF1058_RS07295 at 269.483 kb on - strand, within HMPREF1058_RS07295 at 269.657 kb on + strand, within HMPREF1058_RS07295 at 269.662 kb on - strand, within HMPREF1058_RS07295 at 269.695 kb on - strand, within HMPREF1058_RS07295 at 269.701 kb on + strand, within HMPREF1058_RS07295 at 269.744 kb on - strand, within HMPREF1058_RS07295 at 269.744 kb on - strand, within HMPREF1058_RS07295 at 269.748 kb on + strand, within HMPREF1058_RS07295 at 269.749 kb on - strand, within HMPREF1058_RS07295 at 269.749 kb on - strand, within HMPREF1058_RS07295 at 269.754 kb on - strand, within HMPREF1058_RS07295 at 269.759 kb on + strand, within HMPREF1058_RS07295 at 269.760 kb on - strand, within HMPREF1058_RS07295 at 269.841 kb on + strand at 269.844 kb on - strand at 269.844 kb on - strand at 269.895 kb on + strand at 269.898 kb on + strand at 269.941 kb on - strand at 269.941 kb on - strand at 269.941 kb on - strand at 269.943 kb on - strand at 270.046 kb on - strand at 270.128 kb on + strand, within HMPREF1058_RS07290 at 270.147 kb on + strand, within HMPREF1058_RS07290 at 270.239 kb on + strand, within HMPREF1058_RS07290 at 270.239 kb on + strand, within HMPREF1058_RS07290 at 270.240 kb on - strand, within HMPREF1058_RS07290 at 270.340 kb on - strand, within HMPREF1058_RS07290 at 270.381 kb on + strand, within HMPREF1058_RS07290 at 270.383 kb on + strand, within HMPREF1058_RS07290 at 270.384 kb on - strand, within HMPREF1058_RS07290 at 270.449 kb on + strand, within HMPREF1058_RS07290 at 270.450 kb on - strand, within HMPREF1058_RS07290 at 270.450 kb on - strand, within HMPREF1058_RS07290 at 270.450 kb on - strand, within HMPREF1058_RS07290 at 270.477 kb on - strand, within HMPREF1058_RS07290 at 270.760 kb on - strand, within HMPREF1058_RS07290 at 270.760 kb on - strand, within HMPREF1058_RS07290 at 270.764 kb on - strand, within HMPREF1058_RS07290 at 270.801 kb on - strand at 270.819 kb on - strand at 270.840 kb on - strand at 270.925 kb on - strand at 270.947 kb on + strand at 271.013 kb on + strand at 271.156 kb on - strand at 271.162 kb on - strand at 271.268 kb on + strand at 271.286 kb on + strand at 271.318 kb on + strand, within HMPREF1058_RS07285 at 271.319 kb on - strand, within HMPREF1058_RS07285 at 271.328 kb on + strand, within HMPREF1058_RS07285 at 271.335 kb on - strand, within HMPREF1058_RS07285 at 271.514 kb on - strand, within HMPREF1058_RS07285 at 271.626 kb on - strand, within HMPREF1058_RS07285 at 271.682 kb on + strand, within HMPREF1058_RS07285 at 271.682 kb on + strand, within HMPREF1058_RS07285 at 271.683 kb on - strand, within HMPREF1058_RS07285 at 271.683 kb on - strand, within HMPREF1058_RS07285 at 271.683 kb on - strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.686 kb on + strand, within HMPREF1058_RS07285 at 271.691 kb on + strand, within HMPREF1058_RS07285 at 271.781 kb on + strand, within HMPREF1058_RS07285 at 271.782 kb on - strand, within HMPREF1058_RS07285 at 271.797 kb on + strand, within HMPREF1058_RS07285 at 271.798 kb on - strand, within HMPREF1058_RS07285 at 271.798 kb on - strand, within HMPREF1058_RS07285 at 271.799 kb on + strand, within HMPREF1058_RS07285
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 269,000 + HMPREF1058_RS07295 0.20 -0.0 269,064 - HMPREF1058_RS07295 0.25 -1.2 269,191 - HMPREF1058_RS07295 0.36 -0.9 269,232 + HMPREF1058_RS07295 0.39 -2.6 269,452 - HMPREF1058_RS07295 0.58 +0.2 269,482 + HMPREF1058_RS07295 0.60 -3.7 269,483 - HMPREF1058_RS07295 0.60 -0.0 269,657 + HMPREF1058_RS07295 0.75 -0.0 269,662 - HMPREF1058_RS07295 0.75 -1.9 269,695 - HMPREF1058_RS07295 0.78 -0.0 269,701 + HMPREF1058_RS07295 0.78 -1.0 269,744 - HMPREF1058_RS07295 0.82 +1.4 269,744 - HMPREF1058_RS07295 0.82 -1.3 269,748 + HMPREF1058_RS07295 0.82 -2.0 269,749 - HMPREF1058_RS07295 0.82 -1.4 269,749 - HMPREF1058_RS07295 0.82 -0.8 269,754 - HMPREF1058_RS07295 0.83 -0.0 269,759 + HMPREF1058_RS07295 0.83 -1.6 269,760 - HMPREF1058_RS07295 0.83 -2.0 269,841 + -3.9 269,844 - -2.0 269,844 - +0.7 269,895 + -2.0 269,898 + -3.6 269,941 - +0.2 269,941 - -0.0 269,941 - +0.1 269,943 - -1.0 270,046 - -3.0 270,128 + HMPREF1058_RS07290 0.17 -3.4 270,147 + HMPREF1058_RS07290 0.19 -1.0 270,239 + HMPREF1058_RS07290 0.29 -1.6 270,239 + HMPREF1058_RS07290 0.29 -1.9 270,240 - HMPREF1058_RS07290 0.29 -1.0 270,340 - HMPREF1058_RS07290 0.40 -3.7 270,381 + HMPREF1058_RS07290 0.45 -4.9 270,383 + HMPREF1058_RS07290 0.45 -0.0 270,384 - HMPREF1058_RS07290 0.45 -3.7 270,449 + HMPREF1058_RS07290 0.52 -2.4 270,450 - HMPREF1058_RS07290 0.52 -3.9 270,450 - HMPREF1058_RS07290 0.52 -3.7 270,450 - HMPREF1058_RS07290 0.52 -0.6 270,477 - HMPREF1058_RS07290 0.55 -3.9 270,760 - HMPREF1058_RS07290 0.86 -2.4 270,760 - HMPREF1058_RS07290 0.86 -2.0 270,764 - HMPREF1058_RS07290 0.87 -4.7 270,801 - -1.0 270,819 - -4.7 270,840 - -1.0 270,925 - +1.0 270,947 + -3.6 271,013 + +1.2 271,156 - +5.7 271,162 - +2.0 271,268 + +2.1 271,286 + +1.8 271,318 + HMPREF1058_RS07285 0.11 -2.6 271,319 - HMPREF1058_RS07285 0.11 +1.5 271,328 + HMPREF1058_RS07285 0.11 +2.0 271,335 - HMPREF1058_RS07285 0.12 +2.5 271,514 - HMPREF1058_RS07285 0.27 +0.2 271,626 - HMPREF1058_RS07285 0.36 +3.4 271,682 + HMPREF1058_RS07285 0.41 -0.9 271,682 + HMPREF1058_RS07285 0.41 +1.9 271,683 - HMPREF1058_RS07285 0.41 +2.1 271,683 - HMPREF1058_RS07285 0.41 +4.8 271,683 - HMPREF1058_RS07285 0.41 +0.8 271,686 + HMPREF1058_RS07285 0.41 +5.0 271,686 + HMPREF1058_RS07285 0.41 +1.9 271,686 + HMPREF1058_RS07285 0.41 +2.2 271,686 + HMPREF1058_RS07285 0.41 +3.9 271,691 + HMPREF1058_RS07285 0.41 +0.1 271,781 + HMPREF1058_RS07285 0.49 +1.1 271,782 - HMPREF1058_RS07285 0.49 +0.8 271,797 + HMPREF1058_RS07285 0.50 +0.4 271,798 - HMPREF1058_RS07285 0.50 +1.3 271,798 - HMPREF1058_RS07285 0.50 -0.0 271,799 + HMPREF1058_RS07285 0.50 -0.0
Or see this region's nucleotide sequence