Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07090 and HMPREF1058_RS07085 are separated by 2 nucleotides HMPREF1058_RS07085 and HMPREF1058_RS07080 are separated by 77 nucleotides HMPREF1058_RS07080 and HMPREF1058_RS07075 are separated by 210 nucleotides HMPREF1058_RS07075 and HMPREF1058_RS07070 are separated by 125 nucleotides
HMPREF1058_RS07090: HMPREF1058_RS07090 - hypothetical protein, at 321,264 to 321,530
_RS07090
HMPREF1058_RS07085: HMPREF1058_RS07085 - phage holin family protein, at 321,533 to 321,889
_RS07085
HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164
_RS07080
HMPREF1058_RS07075: HMPREF1058_RS07075 - SPOR domain-containing protein, at 322,375 to 322,872
_RS07075
HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957
_RS07070
Position (kb) 322
323 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 321.448 kb on - strand, within HMPREF1058_RS07090 at 321.661 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.690 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.712 kb on - strand, within HMPREF1058_RS07085 at 321.725 kb on - strand, within HMPREF1058_RS07085 at 321.735 kb on - strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.792 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.862 kb on + strand at 321.863 kb on - strand at 321.947 kb on + strand at 321.947 kb on + strand at 321.947 kb on + strand at 322.024 kb on + strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.042 kb on - strand, within HMPREF1058_RS07080 at 322.046 kb on - strand, within HMPREF1058_RS07080 at 322.149 kb on + strand at 322.149 kb on + strand at 322.149 kb on + strand at 322.305 kb on + strand at 322.307 kb on + strand at 322.327 kb on + strand at 322.327 kb on + strand at 322.329 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.352 kb on - strand at 322.352 kb on - strand at 322.386 kb on - strand at 322.454 kb on - strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.626 kb on - strand, within HMPREF1058_RS07075 at 322.634 kb on - strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.636 kb on - strand, within HMPREF1058_RS07075 at 322.641 kb on - strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.651 kb on - strand, within HMPREF1058_RS07075 at 322.691 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.728 kb on + strand, within HMPREF1058_RS07075 at 322.729 kb on - strand, within HMPREF1058_RS07075 at 322.743 kb on + strand, within HMPREF1058_RS07075 at 322.819 kb on + strand, within HMPREF1058_RS07075 at 322.853 kb on + strand at 322.856 kb on + strand at 322.856 kb on + strand at 322.857 kb on - strand at 322.857 kb on - strand at 322.858 kb on + strand at 322.860 kb on + strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.865 kb on + strand at 322.865 kb on + strand at 322.866 kb on - strand at 322.867 kb on + strand at 322.871 kb on - strand at 322.904 kb on - strand at 322.906 kb on - strand at 322.910 kb on + strand at 322.959 kb on + strand at 323.005 kb on - strand at 323.005 kb on - strand at 323.008 kb on - strand at 323.041 kb on + strand at 323.042 kb on - strand at 323.052 kb on + strand at 323.170 kb on + strand at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.196 kb on - strand, within HMPREF1058_RS07070 at 323.207 kb on + strand, within HMPREF1058_RS07070 at 323.208 kb on - strand, within HMPREF1058_RS07070 at 323.280 kb on - strand, within HMPREF1058_RS07070 at 323.338 kb on + strand, within HMPREF1058_RS07070 at 323.353 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.369 kb on + strand, within HMPREF1058_RS07070 at 323.372 kb on + strand, within HMPREF1058_RS07070 at 323.397 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.408 kb on + strand, within HMPREF1058_RS07070 at 323.502 kb on + strand, within HMPREF1058_RS07070 at 323.510 kb on - strand, within HMPREF1058_RS07070 at 323.534 kb on + strand, within HMPREF1058_RS07070 at 323.616 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.709 kb on - strand, within HMPREF1058_RS07070 at 323.712 kb on + strand, within HMPREF1058_RS07070 at 323.713 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.725 kb on - strand, within HMPREF1058_RS07070 at 323.732 kb on + strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.733 kb on - strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.798 kb on + strand, within HMPREF1058_RS07070 at 323.799 kb on - strand, within HMPREF1058_RS07070 at 323.858 kb on + strand, within HMPREF1058_RS07070
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 321,448 - HMPREF1058_RS07090 0.69 -0.1 321,661 + HMPREF1058_RS07085 0.36 +0.1 321,671 + HMPREF1058_RS07085 0.39 -0.4 321,671 + HMPREF1058_RS07085 0.39 -0.5 321,690 + HMPREF1058_RS07085 0.44 +1.1 321,700 + HMPREF1058_RS07085 0.47 -0.4 321,700 + HMPREF1058_RS07085 0.47 -0.2 321,711 + HMPREF1058_RS07085 0.50 +1.6 321,711 + HMPREF1058_RS07085 0.50 -0.1 321,712 - HMPREF1058_RS07085 0.50 +0.4 321,725 - HMPREF1058_RS07085 0.54 -0.4 321,735 - HMPREF1058_RS07085 0.57 +0.4 321,775 + HMPREF1058_RS07085 0.68 +2.6 321,775 + HMPREF1058_RS07085 0.68 -1.6 321,775 + HMPREF1058_RS07085 0.68 -1.6 321,792 - HMPREF1058_RS07085 0.73 +0.0 321,804 - HMPREF1058_RS07085 0.76 -1.0 321,804 - HMPREF1058_RS07085 0.76 +0.1 321,862 + +0.7 321,863 - -1.0 321,947 + -1.3 321,947 + -1.6 321,947 + +2.3 322,024 + HMPREF1058_RS07080 0.29 -0.3 322,025 - HMPREF1058_RS07080 0.29 -2.3 322,025 - HMPREF1058_RS07080 0.29 -1.0 322,042 - HMPREF1058_RS07080 0.38 -1.3 322,046 - HMPREF1058_RS07080 0.40 +0.7 322,149 + +0.0 322,149 + -0.3 322,149 + +0.0 322,305 + +0.2 322,307 + +3.3 322,327 + -0.3 322,327 + -1.1 322,329 + +0.3 322,348 + +0.9 322,349 - -3.3 322,352 - -0.0 322,352 - -1.6 322,386 - -3.2 322,454 - HMPREF1058_RS07075 0.16 -3.8 322,465 + HMPREF1058_RS07075 0.18 -1.0 322,465 + HMPREF1058_RS07075 0.18 -0.0 322,626 - HMPREF1058_RS07075 0.50 -2.0 322,634 - HMPREF1058_RS07075 0.52 -3.3 322,635 + HMPREF1058_RS07075 0.52 -1.0 322,635 + HMPREF1058_RS07075 0.52 -2.6 322,636 - HMPREF1058_RS07075 0.52 -1.6 322,641 - HMPREF1058_RS07075 0.53 -1.0 322,643 + HMPREF1058_RS07075 0.54 -1.0 322,643 + HMPREF1058_RS07075 0.54 +1.0 322,651 - HMPREF1058_RS07075 0.55 -2.0 322,691 - HMPREF1058_RS07075 0.63 -2.0 322,709 - HMPREF1058_RS07075 0.67 -3.7 322,709 - HMPREF1058_RS07075 0.67 -2.3 322,728 + HMPREF1058_RS07075 0.71 -1.6 322,729 - HMPREF1058_RS07075 0.71 -1.3 322,743 + HMPREF1058_RS07075 0.74 -1.9 322,819 + HMPREF1058_RS07075 0.89 -0.7 322,853 + -1.0 322,856 + +0.6 322,856 + -1.3 322,857 - -0.0 322,857 - -0.0 322,858 + -2.8 322,860 + +1.9 322,861 - -0.0 322,861 - +1.2 322,861 - -0.3 322,865 + -0.5 322,865 + -1.3 322,866 - +0.2 322,867 + +2.3 322,871 - -2.0 322,904 - +0.6 322,906 - -2.9 322,910 + -1.7 322,959 + -1.0 323,005 - -2.8 323,005 - -0.3 323,008 - +0.7 323,041 + -2.3 323,042 - -0.9 323,052 + -0.0 323,170 + -0.0 323,196 - HMPREF1058_RS07070 0.21 -1.0 323,196 - HMPREF1058_RS07070 0.21 -1.0 323,207 + HMPREF1058_RS07070 0.22 -0.7 323,208 - HMPREF1058_RS07070 0.22 +0.6 323,280 - HMPREF1058_RS07070 0.29 -2.5 323,338 + HMPREF1058_RS07070 0.35 -0.0 323,353 + HMPREF1058_RS07070 0.37 -1.6 323,369 + HMPREF1058_RS07070 0.39 +0.7 323,369 + HMPREF1058_RS07070 0.39 +0.1 323,372 + HMPREF1058_RS07070 0.39 -1.8 323,397 + HMPREF1058_RS07070 0.42 -2.5 323,408 + HMPREF1058_RS07070 0.43 -0.3 323,408 + HMPREF1058_RS07070 0.43 -1.0 323,502 + HMPREF1058_RS07070 0.53 -1.5 323,510 - HMPREF1058_RS07070 0.53 -2.9 323,534 + HMPREF1058_RS07070 0.56 -2.2 323,616 - HMPREF1058_RS07070 0.64 -2.0 323,709 - HMPREF1058_RS07070 0.74 -0.4 323,709 - HMPREF1058_RS07070 0.74 -1.2 323,712 + HMPREF1058_RS07070 0.74 -1.5 323,713 - HMPREF1058_RS07070 0.74 -2.3 323,725 - HMPREF1058_RS07070 0.76 -0.0 323,725 - HMPREF1058_RS07070 0.76 -0.0 323,732 + HMPREF1058_RS07070 0.76 +1.0 323,733 - HMPREF1058_RS07070 0.77 -2.6 323,733 - HMPREF1058_RS07070 0.77 +1.2 323,798 + HMPREF1058_RS07070 0.83 -0.7 323,798 + HMPREF1058_RS07070 0.83 +1.3 323,799 - HMPREF1058_RS07070 0.83 -1.6 323,858 + HMPREF1058_RS07070 0.90 -0.6
Or see this region's nucleotide sequence