Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06635 and HMPREF1058_RS06630 overlap by 1 nucleotides HMPREF1058_RS06630 and HMPREF1058_RS06625 are separated by 35 nucleotides HMPREF1058_RS06625 and HMPREF1058_RS06620 are separated by 113 nucleotides
HMPREF1058_RS06635: HMPREF1058_RS06635 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 432,536 to 433,105
_RS06635
HMPREF1058_RS06630: HMPREF1058_RS06630 - glucose-1-phosphate thymidylyltransferase RfbA, at 433,105 to 433,992
_RS06630
HMPREF1058_RS06625: HMPREF1058_RS06625 - undecaprenyl-phosphate glucose phosphotransferase, at 434,028 to 435,431
_RS06625
HMPREF1058_RS06620: HMPREF1058_RS06620 - mannose-1-phosphate guanylyltransferase, at 435,545 to 436,609
_RS06620
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.139 kb on - strand at 434.030 kb on - strand at 434.117 kb on - strand at 434.255 kb on - strand, within HMPREF1058_RS06625 at 434.265 kb on - strand, within HMPREF1058_RS06625 at 434.448 kb on - strand, within HMPREF1058_RS06625 at 434.517 kb on - strand, within HMPREF1058_RS06625 at 434.529 kb on - strand, within HMPREF1058_RS06625 at 434.550 kb on - strand, within HMPREF1058_RS06625 at 434.569 kb on - strand, within HMPREF1058_RS06625 at 434.706 kb on - strand, within HMPREF1058_RS06625 at 434.710 kb on - strand, within HMPREF1058_RS06625 at 434.820 kb on - strand, within HMPREF1058_RS06625 at 434.882 kb on - strand, within HMPREF1058_RS06625 at 434.930 kb on - strand, within HMPREF1058_RS06625 at 434.967 kb on - strand, within HMPREF1058_RS06625 at 435.073 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.157 kb on - strand, within HMPREF1058_RS06625 at 435.226 kb on - strand, within HMPREF1058_RS06625 at 435.257 kb on - strand, within HMPREF1058_RS06625 at 435.281 kb on - strand, within HMPREF1058_RS06625 at 435.396 kb on - strand at 435.400 kb on - strand at 435.463 kb on - strand at 435.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 433,139 - -1.6 434,030 - -1.7 434,117 - -0.0 434,255 - HMPREF1058_RS06625 0.16 -2.0 434,265 - HMPREF1058_RS06625 0.17 -2.6 434,448 - HMPREF1058_RS06625 0.30 -2.6 434,517 - HMPREF1058_RS06625 0.35 -2.7 434,529 - HMPREF1058_RS06625 0.36 -2.3 434,550 - HMPREF1058_RS06625 0.37 -0.0 434,569 - HMPREF1058_RS06625 0.39 -1.3 434,706 - HMPREF1058_RS06625 0.48 -3.2 434,710 - HMPREF1058_RS06625 0.49 -2.0 434,820 - HMPREF1058_RS06625 0.56 -0.7 434,882 - HMPREF1058_RS06625 0.61 -1.0 434,930 - HMPREF1058_RS06625 0.64 -2.6 434,967 - HMPREF1058_RS06625 0.67 -1.0 435,073 - HMPREF1058_RS06625 0.74 -2.8 435,157 - HMPREF1058_RS06625 0.80 -1.0 435,157 - HMPREF1058_RS06625 0.80 -2.3 435,157 - HMPREF1058_RS06625 0.80 -1.7 435,226 - HMPREF1058_RS06625 0.85 -1.6 435,257 - HMPREF1058_RS06625 0.88 -2.0 435,281 - HMPREF1058_RS06625 0.89 -1.6 435,396 - -2.8 435,400 - -3.2 435,463 - +0.4 435,470 - +1.1
Or see this region's nucleotide sequence