Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06610 and HMPREF1058_RS06605 are separated by 148 nucleotides HMPREF1058_RS06605 and HMPREF1058_RS06600 are separated by 68 nucleotides HMPREF1058_RS06600 and HMPREF1058_RS06595 are separated by 7 nucleotides
HMPREF1058_RS06610: HMPREF1058_RS06610 - GDP-L-fucose synthase, at 437,867 to 438,943
_RS06610
HMPREF1058_RS06605: HMPREF1058_RS06605 - thiol peroxidase, at 439,092 to 439,595
_RS06605
HMPREF1058_RS06600: HMPREF1058_RS06600 - DedA family protein, at 439,664 to 440,290
_RS06600
HMPREF1058_RS06595: HMPREF1058_RS06595 - hypothetical protein, at 440,298 to 441,815
_RS06595
Position (kb) 439
440
441 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 438.683 kb on + strand, within HMPREF1058_RS06610 at 438.684 kb on - strand, within HMPREF1058_RS06610 at 438.838 kb on + strand at 438.894 kb on + strand at 438.895 kb on - strand at 438.917 kb on + strand at 438.934 kb on + strand at 438.958 kb on - strand at 439.009 kb on + strand at 439.041 kb on + strand at 439.042 kb on - strand at 439.120 kb on + strand at 439.121 kb on - strand at 439.157 kb on + strand, within HMPREF1058_RS06605 at 439.158 kb on - strand, within HMPREF1058_RS06605 at 439.160 kb on - strand, within HMPREF1058_RS06605 at 439.236 kb on + strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.237 kb on - strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.265 kb on + strand, within HMPREF1058_RS06605 at 439.347 kb on - strand, within HMPREF1058_RS06605 at 439.485 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.487 kb on - strand, within HMPREF1058_RS06605 at 439.577 kb on + strand at 439.578 kb on - strand at 439.578 kb on - strand at 439.701 kb on - strand at 439.715 kb on + strand at 439.716 kb on - strand at 439.731 kb on - strand, within HMPREF1058_RS06600 at 439.829 kb on - strand, within HMPREF1058_RS06600 at 439.848 kb on + strand, within HMPREF1058_RS06600 at 440.037 kb on + strand, within HMPREF1058_RS06600 at 440.062 kb on - strand, within HMPREF1058_RS06600 at 440.070 kb on + strand, within HMPREF1058_RS06600 at 440.420 kb on + strand at 440.509 kb on + strand, within HMPREF1058_RS06595 at 440.510 kb on - strand, within HMPREF1058_RS06595 at 440.596 kb on - strand, within HMPREF1058_RS06595 at 440.730 kb on + strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.802 kb on - strand, within HMPREF1058_RS06595 at 440.804 kb on - strand, within HMPREF1058_RS06595 at 440.863 kb on - strand, within HMPREF1058_RS06595 at 440.918 kb on + strand, within HMPREF1058_RS06595 at 440.957 kb on - strand, within HMPREF1058_RS06595 at 441.263 kb on - strand, within HMPREF1058_RS06595
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 438,683 + HMPREF1058_RS06610 0.76 -1.6 438,684 - HMPREF1058_RS06610 0.76 -0.2 438,838 + -0.6 438,894 + -1.3 438,895 - -0.6 438,917 + +1.6 438,934 + +0.8 438,958 - -1.3 439,009 + +0.8 439,041 + +1.8 439,042 - -0.5 439,120 + +1.0 439,121 - -1.8 439,157 + HMPREF1058_RS06605 0.13 +0.6 439,158 - HMPREF1058_RS06605 0.13 -0.0 439,160 - HMPREF1058_RS06605 0.13 -2.6 439,236 + HMPREF1058_RS06605 0.29 +1.0 439,237 - HMPREF1058_RS06605 0.29 -0.3 439,237 - HMPREF1058_RS06605 0.29 -0.4 439,237 - HMPREF1058_RS06605 0.29 +0.5 439,265 + HMPREF1058_RS06605 0.34 -0.3 439,265 + HMPREF1058_RS06605 0.34 -0.4 439,347 - HMPREF1058_RS06605 0.51 -2.7 439,485 - HMPREF1058_RS06605 0.78 +0.3 439,487 - HMPREF1058_RS06605 0.78 -1.2 439,487 - HMPREF1058_RS06605 0.78 -1.4 439,487 - HMPREF1058_RS06605 0.78 +1.2 439,487 - HMPREF1058_RS06605 0.78 -1.3 439,577 + -1.6 439,578 - +0.8 439,578 - -0.2 439,701 - -0.0 439,715 + -1.6 439,716 - -1.6 439,731 - HMPREF1058_RS06600 0.11 -5.1 439,829 - HMPREF1058_RS06600 0.26 -1.0 439,848 + HMPREF1058_RS06600 0.29 -1.0 440,037 + HMPREF1058_RS06600 0.59 -2.6 440,062 - HMPREF1058_RS06600 0.63 -2.3 440,070 + HMPREF1058_RS06600 0.65 -2.3 440,420 + -1.6 440,509 + HMPREF1058_RS06595 0.14 -3.9 440,510 - HMPREF1058_RS06595 0.14 -0.4 440,596 - HMPREF1058_RS06595 0.20 -2.1 440,730 + HMPREF1058_RS06595 0.28 -2.0 440,802 - HMPREF1058_RS06595 0.33 -2.3 440,802 - HMPREF1058_RS06595 0.33 -3.3 440,804 - HMPREF1058_RS06595 0.33 -0.5 440,863 - HMPREF1058_RS06595 0.37 -0.6 440,918 + HMPREF1058_RS06595 0.41 -1.0 440,957 - HMPREF1058_RS06595 0.43 +0.5 441,263 - HMPREF1058_RS06595 0.64 -1.0
Or see this region's nucleotide sequence