Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06565 and HMPREF1058_RS06560 are separated by 401 nucleotides HMPREF1058_RS06560 and HMPREF1058_RS06555 are separated by 110 nucleotides HMPREF1058_RS06555 and HMPREF1058_RS06550 overlap by 8 nucleotides
HMPREF1058_RS06565: HMPREF1058_RS06565 - phosphate signaling complex protein PhoU, at 447,934 to 448,635
_RS06565
HMPREF1058_RS06560: HMPREF1058_RS06560 - carboxypeptidase-like regulatory domain-containing protein, at 449,037 to 451,610
_RS06560
HMPREF1058_RS06555: HMPREF1058_RS06555 - nucleotidyltransferase domain-containing protein, at 451,721 to 452,014
_RS06555
HMPREF1058_RS06550: HMPREF1058_RS06550 - DUF86 domain-containing protein, at 452,007 to 452,381
_RS06550
Position (kb) 449
450
451
452 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 448.142 kb on - strand, within HMPREF1058_RS06565 at 448.190 kb on + strand, within HMPREF1058_RS06565 at 448.296 kb on + strand, within HMPREF1058_RS06565 at 448.299 kb on - strand, within HMPREF1058_RS06565 at 448.532 kb on + strand, within HMPREF1058_RS06565 at 448.533 kb on - strand, within HMPREF1058_RS06565 at 448.598 kb on + strand at 448.654 kb on - strand at 448.673 kb on - strand at 448.674 kb on + strand at 448.676 kb on + strand at 448.676 kb on + strand at 448.841 kb on + strand at 448.841 kb on + strand at 448.972 kb on + strand at 448.972 kb on + strand at 449.001 kb on + strand at 449.017 kb on + strand at 449.049 kb on + strand at 449.049 kb on + strand at 449.068 kb on + strand at 449.081 kb on - strand at 449.271 kb on + strand at 449.272 kb on - strand at 449.291 kb on + strand at 449.292 kb on - strand at 449.293 kb on + strand at 449.385 kb on + strand, within HMPREF1058_RS06560 at 449.399 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.473 kb on - strand, within HMPREF1058_RS06560 at 449.483 kb on + strand, within HMPREF1058_RS06560 at 449.484 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.615 kb on + strand, within HMPREF1058_RS06560 at 449.822 kb on + strand, within HMPREF1058_RS06560 at 449.859 kb on + strand, within HMPREF1058_RS06560 at 449.860 kb on - strand, within HMPREF1058_RS06560 at 449.976 kb on + strand, within HMPREF1058_RS06560 at 449.978 kb on + strand, within HMPREF1058_RS06560 at 450.314 kb on + strand, within HMPREF1058_RS06560 at 450.354 kb on + strand, within HMPREF1058_RS06560 at 450.461 kb on + strand, within HMPREF1058_RS06560 at 450.465 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.543 kb on + strand, within HMPREF1058_RS06560 at 450.576 kb on + strand, within HMPREF1058_RS06560 at 450.579 kb on - strand, within HMPREF1058_RS06560 at 450.579 kb on - strand, within HMPREF1058_RS06560 at 450.594 kb on + strand, within HMPREF1058_RS06560 at 450.664 kb on - strand, within HMPREF1058_RS06560 at 450.757 kb on - strand, within HMPREF1058_RS06560 at 450.757 kb on - strand, within HMPREF1058_RS06560 at 450.863 kb on + strand, within HMPREF1058_RS06560 at 451.005 kb on - strand, within HMPREF1058_RS06560 at 451.050 kb on + strand, within HMPREF1058_RS06560 at 451.057 kb on - strand, within HMPREF1058_RS06560 at 451.110 kb on - strand, within HMPREF1058_RS06560 at 451.194 kb on + strand, within HMPREF1058_RS06560 at 451.194 kb on + strand, within HMPREF1058_RS06560 at 451.195 kb on - strand, within HMPREF1058_RS06560 at 451.229 kb on + strand, within HMPREF1058_RS06560 at 451.229 kb on + strand, within HMPREF1058_RS06560 at 451.230 kb on - strand, within HMPREF1058_RS06560 at 451.230 kb on - strand, within HMPREF1058_RS06560 at 451.271 kb on - strand, within HMPREF1058_RS06560 at 451.517 kb on - strand at 451.525 kb on + strand at 451.526 kb on - strand at 451.530 kb on + strand at 451.530 kb on + strand at 451.656 kb on + strand at 451.726 kb on - strand at 451.742 kb on - strand at 451.874 kb on - strand, within HMPREF1058_RS06555 at 451.874 kb on - strand, within HMPREF1058_RS06555 at 451.892 kb on - strand, within HMPREF1058_RS06555 at 452.006 kb on + strand at 452.006 kb on + strand at 452.006 kb on + strand at 452.007 kb on - strand at 452.007 kb on - strand at 452.010 kb on + strand at 452.067 kb on + strand, within HMPREF1058_RS06550 at 452.074 kb on + strand, within HMPREF1058_RS06550 at 452.074 kb on + strand, within HMPREF1058_RS06550 at 452.074 kb on + strand, within HMPREF1058_RS06550 at 452.075 kb on - strand, within HMPREF1058_RS06550 at 452.075 kb on - strand, within HMPREF1058_RS06550 at 452.075 kb on - strand, within HMPREF1058_RS06550 at 452.173 kb on + strand, within HMPREF1058_RS06550 at 452.204 kb on - strand, within HMPREF1058_RS06550 at 452.226 kb on + strand, within HMPREF1058_RS06550 at 452.226 kb on + strand, within HMPREF1058_RS06550 at 452.228 kb on + strand, within HMPREF1058_RS06550 at 452.250 kb on - strand, within HMPREF1058_RS06550 at 452.250 kb on - strand, within HMPREF1058_RS06550 at 452.253 kb on + strand, within HMPREF1058_RS06550 at 452.254 kb on - strand, within HMPREF1058_RS06550 at 452.254 kb on - strand, within HMPREF1058_RS06550 at 452.258 kb on + strand, within HMPREF1058_RS06550 at 452.258 kb on + strand, within HMPREF1058_RS06550 at 452.288 kb on + strand, within HMPREF1058_RS06550 at 452.288 kb on + strand, within HMPREF1058_RS06550 at 452.289 kb on - strand, within HMPREF1058_RS06550 at 452.306 kb on - strand, within HMPREF1058_RS06550 at 452.308 kb on + strand, within HMPREF1058_RS06550 at 452.312 kb on + strand, within HMPREF1058_RS06550 at 452.312 kb on + strand, within HMPREF1058_RS06550 at 452.313 kb on - strand, within HMPREF1058_RS06550 at 452.319 kb on - strand, within HMPREF1058_RS06550 at 452.335 kb on + strand, within HMPREF1058_RS06550 at 452.336 kb on - strand, within HMPREF1058_RS06550 at 452.369 kb on + strand at 452.413 kb on + strand at 452.475 kb on + strand at 452.486 kb on + strand at 452.518 kb on + strand at 452.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 448,142 - HMPREF1058_RS06565 0.30 -1.0 448,190 + HMPREF1058_RS06565 0.36 -2.5 448,296 + HMPREF1058_RS06565 0.52 +0.1 448,299 - HMPREF1058_RS06565 0.52 -0.1 448,532 + HMPREF1058_RS06565 0.85 +0.6 448,533 - HMPREF1058_RS06565 0.85 +0.1 448,598 + -0.6 448,654 - +0.7 448,673 - -2.0 448,674 + +1.2 448,676 + -0.7 448,676 + +0.8 448,841 + -1.0 448,841 + -1.0 448,972 + +3.1 448,972 + +1.0 449,001 + +1.0 449,017 + +0.3 449,049 + -3.8 449,049 + -3.7 449,068 + -1.6 449,081 - -3.3 449,271 + -4.3 449,272 - -1.6 449,291 + -4.7 449,292 - -2.0 449,293 + -5.3 449,385 + HMPREF1058_RS06560 0.14 -4.7 449,399 + HMPREF1058_RS06560 0.14 -3.0 449,472 + HMPREF1058_RS06560 0.17 -3.3 449,472 + HMPREF1058_RS06560 0.17 -3.2 449,473 - HMPREF1058_RS06560 0.17 -1.0 449,483 + HMPREF1058_RS06560 0.17 -1.0 449,484 - HMPREF1058_RS06560 0.17 -3.6 449,548 - HMPREF1058_RS06560 0.20 -1.0 449,548 - HMPREF1058_RS06560 0.20 -3.3 449,548 - HMPREF1058_RS06560 0.20 -2.3 449,615 + HMPREF1058_RS06560 0.22 -2.0 449,822 + HMPREF1058_RS06560 0.30 -0.0 449,859 + HMPREF1058_RS06560 0.32 -3.5 449,860 - HMPREF1058_RS06560 0.32 -4.0 449,976 + HMPREF1058_RS06560 0.36 -1.6 449,978 + HMPREF1058_RS06560 0.37 -2.3 450,314 + HMPREF1058_RS06560 0.50 -3.8 450,354 + HMPREF1058_RS06560 0.51 -3.2 450,461 + HMPREF1058_RS06560 0.55 -1.0 450,465 + HMPREF1058_RS06560 0.55 -2.0 450,543 + HMPREF1058_RS06560 0.59 -2.3 450,543 + HMPREF1058_RS06560 0.59 -3.8 450,543 + HMPREF1058_RS06560 0.59 -3.6 450,543 + HMPREF1058_RS06560 0.59 -4.2 450,576 + HMPREF1058_RS06560 0.60 -1.6 450,579 - HMPREF1058_RS06560 0.60 -2.6 450,579 - HMPREF1058_RS06560 0.60 -1.0 450,594 + HMPREF1058_RS06560 0.60 -2.0 450,664 - HMPREF1058_RS06560 0.63 -3.2 450,757 - HMPREF1058_RS06560 0.67 -2.6 450,757 - HMPREF1058_RS06560 0.67 -3.3 450,863 + HMPREF1058_RS06560 0.71 -2.3 451,005 - HMPREF1058_RS06560 0.76 -2.0 451,050 + HMPREF1058_RS06560 0.78 -0.0 451,057 - HMPREF1058_RS06560 0.78 -2.0 451,110 - HMPREF1058_RS06560 0.81 -2.3 451,194 + HMPREF1058_RS06560 0.84 -2.0 451,194 + HMPREF1058_RS06560 0.84 -3.2 451,195 - HMPREF1058_RS06560 0.84 -2.3 451,229 + HMPREF1058_RS06560 0.85 -1.6 451,229 + HMPREF1058_RS06560 0.85 -2.6 451,230 - HMPREF1058_RS06560 0.85 -1.0 451,230 - HMPREF1058_RS06560 0.85 -1.6 451,271 - HMPREF1058_RS06560 0.87 -2.0 451,517 - -2.3 451,525 + -4.3 451,526 - -4.1 451,530 + -4.1 451,530 + -2.3 451,656 + +1.3 451,726 - -2.0 451,742 - -0.0 451,874 - HMPREF1058_RS06555 0.52 +0.3 451,874 - HMPREF1058_RS06555 0.52 -2.3 451,892 - HMPREF1058_RS06555 0.58 -0.6 452,006 + -0.4 452,006 + -0.7 452,006 + -1.2 452,007 - +1.0 452,007 - +3.1 452,010 + -0.7 452,067 + HMPREF1058_RS06550 0.16 +0.7 452,074 + HMPREF1058_RS06550 0.18 -2.0 452,074 + HMPREF1058_RS06550 0.18 +1.9 452,074 + HMPREF1058_RS06550 0.18 +1.4 452,075 - HMPREF1058_RS06550 0.18 -1.0 452,075 - HMPREF1058_RS06550 0.18 -1.3 452,075 - HMPREF1058_RS06550 0.18 -1.0 452,173 + HMPREF1058_RS06550 0.44 +1.2 452,204 - HMPREF1058_RS06550 0.53 -1.6 452,226 + HMPREF1058_RS06550 0.58 +0.7 452,226 + HMPREF1058_RS06550 0.58 -1.7 452,228 + HMPREF1058_RS06550 0.59 -0.0 452,250 - HMPREF1058_RS06550 0.65 +0.3 452,250 - HMPREF1058_RS06550 0.65 -0.0 452,253 + HMPREF1058_RS06550 0.66 +0.2 452,254 - HMPREF1058_RS06550 0.66 -1.0 452,254 - HMPREF1058_RS06550 0.66 -1.3 452,258 + HMPREF1058_RS06550 0.67 +0.4 452,258 + HMPREF1058_RS06550 0.67 +0.4 452,288 + HMPREF1058_RS06550 0.75 +0.9 452,288 + HMPREF1058_RS06550 0.75 +0.8 452,289 - HMPREF1058_RS06550 0.75 +0.7 452,306 - HMPREF1058_RS06550 0.80 +1.7 452,308 + HMPREF1058_RS06550 0.80 +0.7 452,312 + HMPREF1058_RS06550 0.81 -1.6 452,312 + HMPREF1058_RS06550 0.81 -1.7 452,313 - HMPREF1058_RS06550 0.82 -1.6 452,319 - HMPREF1058_RS06550 0.83 +1.0 452,335 + HMPREF1058_RS06550 0.87 +0.9 452,336 - HMPREF1058_RS06550 0.88 +1.3 452,369 + +0.5 452,413 + -1.5 452,475 + +0.8 452,486 + +0.4 452,518 + -0.0 452,532 - -0.0
Or see this region's nucleotide sequence