Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06385 and HMPREF1058_RS06380 are separated by 91 nucleotides HMPREF1058_RS06380 and HMPREF1058_RS06375 are separated by 300 nucleotides
HMPREF1058_RS06385: HMPREF1058_RS06385 - transglutaminase domain-containing protein, at 491,075 to 493,738
_RS06385
HMPREF1058_RS06380: HMPREF1058_RS06380 - copper homeostasis protein CutC, at 493,830 to 494,693
_RS06380
HMPREF1058_RS06375: HMPREF1058_RS06375 - glutaminase A, at 494,994 to 495,956
_RS06375
Position (kb) 493
494
495 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 492.871 kb on + strand, within HMPREF1058_RS06385 at 492.871 kb on + strand, within HMPREF1058_RS06385 at 492.871 kb on + strand, within HMPREF1058_RS06385 at 493.016 kb on + strand at 493.017 kb on - strand, within HMPREF1058_RS06385 at 493.020 kb on - strand, within HMPREF1058_RS06385 at 493.076 kb on + strand, within HMPREF1058_RS06385 at 493.160 kb on + strand, within HMPREF1058_RS06385 at 493.160 kb on + strand, within HMPREF1058_RS06385 at 493.282 kb on + strand, within HMPREF1058_RS06385 at 493.316 kb on - strand, within HMPREF1058_RS06385 at 493.316 kb on - strand, within HMPREF1058_RS06385 at 493.322 kb on - strand, within HMPREF1058_RS06385 at 493.351 kb on + strand, within HMPREF1058_RS06385 at 493.351 kb on + strand, within HMPREF1058_RS06385 at 493.380 kb on - strand, within HMPREF1058_RS06385 at 493.508 kb on + strand at 493.689 kb on - strand at 493.690 kb on + strand at 493.725 kb on + strand at 493.729 kb on + strand at 493.729 kb on + strand at 493.730 kb on - strand at 493.736 kb on + strand at 493.748 kb on + strand at 493.799 kb on - strand at 493.802 kb on + strand at 493.803 kb on - strand at 493.803 kb on - strand at 493.824 kb on - strand at 493.832 kb on - strand at 494.017 kb on - strand, within HMPREF1058_RS06380 at 494.034 kb on + strand, within HMPREF1058_RS06380 at 494.075 kb on + strand, within HMPREF1058_RS06380 at 494.129 kb on + strand, within HMPREF1058_RS06380 at 494.133 kb on - strand, within HMPREF1058_RS06380 at 494.243 kb on + strand, within HMPREF1058_RS06380 at 494.256 kb on + strand, within HMPREF1058_RS06380 at 494.384 kb on - strand, within HMPREF1058_RS06380 at 494.484 kb on + strand, within HMPREF1058_RS06380 at 494.538 kb on + strand, within HMPREF1058_RS06380 at 494.604 kb on + strand, within HMPREF1058_RS06380 at 494.618 kb on - strand at 494.694 kb on - strand at 494.706 kb on + strand at 494.858 kb on - strand at 494.888 kb on + strand at 495.024 kb on + strand at 495.048 kb on - strand at 495.050 kb on + strand at 495.050 kb on + strand at 495.401 kb on - strand, within HMPREF1058_RS06375 at 495.405 kb on - strand, within HMPREF1058_RS06375 at 495.507 kb on + strand, within HMPREF1058_RS06375
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 492,871 + HMPREF1058_RS06385 0.67 -0.0 492,871 + HMPREF1058_RS06385 0.67 -1.0 492,871 + HMPREF1058_RS06385 0.67 +0.1 493,016 + +1.6 493,017 - HMPREF1058_RS06385 0.73 -2.5 493,020 - HMPREF1058_RS06385 0.73 -1.6 493,076 + HMPREF1058_RS06385 0.75 -1.3 493,160 + HMPREF1058_RS06385 0.78 +0.2 493,160 + HMPREF1058_RS06385 0.78 +0.7 493,282 + HMPREF1058_RS06385 0.83 +0.9 493,316 - HMPREF1058_RS06385 0.84 -0.0 493,316 - HMPREF1058_RS06385 0.84 +0.6 493,322 - HMPREF1058_RS06385 0.84 -0.4 493,351 + HMPREF1058_RS06385 0.85 +2.3 493,351 + HMPREF1058_RS06385 0.85 -2.9 493,380 - HMPREF1058_RS06385 0.87 -0.2 493,508 + +1.0 493,689 - -1.1 493,690 + -1.0 493,725 + +0.9 493,729 + -0.4 493,729 + +1.1 493,730 - +1.0 493,736 + -0.3 493,748 + +2.5 493,799 - -0.0 493,802 + -0.9 493,803 - +2.1 493,803 - +0.9 493,824 - +1.6 493,832 - -0.0 494,017 - HMPREF1058_RS06380 0.22 -4.7 494,034 + HMPREF1058_RS06380 0.24 -0.0 494,075 + HMPREF1058_RS06380 0.28 -2.6 494,129 + HMPREF1058_RS06380 0.35 -2.0 494,133 - HMPREF1058_RS06380 0.35 -4.4 494,243 + HMPREF1058_RS06380 0.48 -2.6 494,256 + HMPREF1058_RS06380 0.49 -2.8 494,384 - HMPREF1058_RS06380 0.64 -2.0 494,484 + HMPREF1058_RS06380 0.76 -1.6 494,538 + HMPREF1058_RS06380 0.82 -0.6 494,604 + HMPREF1058_RS06380 0.90 -3.3 494,618 - -0.0 494,694 - -0.7 494,706 + -2.8 494,858 - -2.4 494,888 + -4.3 495,024 + -1.0 495,048 - -0.1 495,050 + +0.6 495,050 + +1.2 495,401 - HMPREF1058_RS06375 0.42 +0.6 495,405 - HMPREF1058_RS06375 0.43 -1.4 495,507 + HMPREF1058_RS06375 0.53 +1.1
Or see this region's nucleotide sequence