Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06340

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06345 and HMPREF1058_RS06340 are separated by 40 nucleotidesHMPREF1058_RS06340 and HMPREF1058_RS06335 are separated by 14 nucleotides HMPREF1058_RS06345: HMPREF1058_RS06345 - Fe-S cluster domain-containing protein, at 501,890 to 502,843 _RS06345 HMPREF1058_RS06340: HMPREF1058_RS06340 - electron transport complex subunit RsxC, at 502,884 to 504,221 _RS06340 HMPREF1058_RS06335: HMPREF1058_RS06335 - RnfABCDGE type electron transport complex subunit D, at 504,236 to 505,225 _RS06335 Position (kb) 502 503 504 505Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 502.119 kb on + strand, within HMPREF1058_RS06345at 502.120 kb on - strand, within HMPREF1058_RS06345at 502.120 kb on - strand, within HMPREF1058_RS06345at 502.155 kb on + strand, within HMPREF1058_RS06345at 502.157 kb on - strand, within HMPREF1058_RS06345at 502.222 kb on + strand, within HMPREF1058_RS06345at 502.561 kb on + strand, within HMPREF1058_RS06345at 502.606 kb on + strand, within HMPREF1058_RS06345at 502.606 kb on + strand, within HMPREF1058_RS06345at 502.628 kb on + strand, within HMPREF1058_RS06345at 502.729 kb on - strand, within HMPREF1058_RS06345at 502.773 kb on + strandat 502.857 kb on + strandat 502.857 kb on + strandat 503.047 kb on + strand, within HMPREF1058_RS06340at 503.048 kb on - strand, within HMPREF1058_RS06340at 503.126 kb on - strand, within HMPREF1058_RS06340at 503.284 kb on + strand, within HMPREF1058_RS06340at 503.285 kb on - strand, within HMPREF1058_RS06340at 503.364 kb on - strand, within HMPREF1058_RS06340at 503.374 kb on + strand, within HMPREF1058_RS06340at 503.375 kb on - strand, within HMPREF1058_RS06340at 503.612 kb on - strand, within HMPREF1058_RS06340at 503.612 kb on - strand, within HMPREF1058_RS06340at 503.686 kb on + strand, within HMPREF1058_RS06340at 503.686 kb on + strand, within HMPREF1058_RS06340at 503.687 kb on - strand, within HMPREF1058_RS06340at 503.687 kb on - strand, within HMPREF1058_RS06340at 503.921 kb on + strand, within HMPREF1058_RS06340at 503.922 kb on - strand, within HMPREF1058_RS06340at 504.094 kb on + strandat 504.094 kb on + strandat 504.095 kb on - strandat 504.095 kb on - strandat 504.128 kb on + strandat 504.160 kb on - strandat 504.220 kb on - strandat 504.236 kb on - strandat 504.236 kb on - strandat 504.236 kb on - strandat 504.250 kb on - strandat 504.252 kb on + strandat 504.255 kb on + strandat 504.291 kb on + strandat 504.291 kb on + strandat 504.292 kb on - strandat 504.301 kb on + strandat 504.302 kb on - strandat 504.302 kb on - strandat 504.305 kb on + strandat 504.306 kb on - strandat 504.306 kb on - strandat 504.327 kb on + strandat 504.454 kb on + strand, within HMPREF1058_RS06335at 504.478 kb on + strand, within HMPREF1058_RS06335at 504.480 kb on + strand, within HMPREF1058_RS06335at 504.481 kb on - strand, within HMPREF1058_RS06335at 504.692 kb on + strand, within HMPREF1058_RS06335at 504.715 kb on + strand, within HMPREF1058_RS06335at 504.766 kb on - strand, within HMPREF1058_RS06335at 504.786 kb on + strand, within HMPREF1058_RS06335at 504.786 kb on + strand, within HMPREF1058_RS06335at 504.787 kb on - strand, within HMPREF1058_RS06335at 504.787 kb on - strand, within HMPREF1058_RS06335at 504.819 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.862 kb on + strand, within HMPREF1058_RS06335at 504.863 kb on - strand, within HMPREF1058_RS06335at 504.863 kb on - strand, within HMPREF1058_RS06335at 504.863 kb on - strand, within HMPREF1058_RS06335at 504.901 kb on - strand, within HMPREF1058_RS06335at 504.919 kb on - strand, within HMPREF1058_RS06335at 504.919 kb on - strand, within HMPREF1058_RS06335at 504.988 kb on + strand, within HMPREF1058_RS06335at 504.988 kb on + strand, within HMPREF1058_RS06335at 505.031 kb on + strand, within HMPREF1058_RS06335at 505.031 kb on + strand, within HMPREF1058_RS06335at 505.036 kb on + strand, within HMPREF1058_RS06335at 505.036 kb on + strand, within HMPREF1058_RS06335at 505.036 kb on + strand, within HMPREF1058_RS06335at 505.037 kb on - strand, within HMPREF1058_RS06335at 505.037 kb on - strand, within HMPREF1058_RS06335at 505.054 kb on + strand, within HMPREF1058_RS06335at 505.067 kb on - strand, within HMPREF1058_RS06335at 505.067 kb on - strand, within HMPREF1058_RS06335at 505.133 kb on - strandat 505.147 kb on - strandat 505.184 kb on + strandat 505.189 kb on + strandat 505.195 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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502,119 + HMPREF1058_RS06345 0.24 -3.3
502,120 - HMPREF1058_RS06345 0.24 -2.0
502,120 - HMPREF1058_RS06345 0.24 -1.6
502,155 + HMPREF1058_RS06345 0.28 -3.0
502,157 - HMPREF1058_RS06345 0.28 -3.3
502,222 + HMPREF1058_RS06345 0.35 -0.0
502,561 + HMPREF1058_RS06345 0.70 -1.0
502,606 + HMPREF1058_RS06345 0.75 -4.8
502,606 + HMPREF1058_RS06345 0.75 -2.0
502,628 + HMPREF1058_RS06345 0.77 -5.0
502,729 - HMPREF1058_RS06345 0.88 -1.6
502,773 + -0.0
502,857 + -1.2
502,857 + +0.6
503,047 + HMPREF1058_RS06340 0.12 -1.0
503,048 - HMPREF1058_RS06340 0.12 -1.0
503,126 - HMPREF1058_RS06340 0.18 -1.0
503,284 + HMPREF1058_RS06340 0.30 -1.0
503,285 - HMPREF1058_RS06340 0.30 -2.0
503,364 - HMPREF1058_RS06340 0.36 -2.3
503,374 + HMPREF1058_RS06340 0.37 -2.0
503,375 - HMPREF1058_RS06340 0.37 -3.0
503,612 - HMPREF1058_RS06340 0.54 -3.5
503,612 - HMPREF1058_RS06340 0.54 -1.0
503,686 + HMPREF1058_RS06340 0.60 -2.0
503,686 + HMPREF1058_RS06340 0.60 -2.6
503,687 - HMPREF1058_RS06340 0.60 -3.6
503,687 - HMPREF1058_RS06340 0.60 -0.0
503,921 + HMPREF1058_RS06340 0.78 -1.0
503,922 - HMPREF1058_RS06340 0.78 -3.3
504,094 + -3.2
504,094 + -1.0
504,095 - -0.0
504,095 - -2.0
504,128 + -1.0
504,160 - -3.2
504,220 - -3.8
504,236 - -1.0
504,236 - -2.8
504,236 - -3.2
504,250 - -0.0
504,252 + -0.0
504,255 + -3.6
504,291 + -1.6
504,291 + -3.2
504,292 - -3.5
504,301 + -2.3
504,302 - -0.0
504,302 - -1.0
504,305 + -2.0
504,306 - -0.0
504,306 - -2.0
504,327 + -3.2
504,454 + HMPREF1058_RS06335 0.22 -4.0
504,478 + HMPREF1058_RS06335 0.24 -2.8
504,480 + HMPREF1058_RS06335 0.25 -2.3
504,481 - HMPREF1058_RS06335 0.25 -3.7
504,692 + HMPREF1058_RS06335 0.46 -0.0
504,715 + HMPREF1058_RS06335 0.48 -1.0
504,766 - HMPREF1058_RS06335 0.54 -0.0
504,786 + HMPREF1058_RS06335 0.56 -3.7
504,786 + HMPREF1058_RS06335 0.56 -2.6
504,787 - HMPREF1058_RS06335 0.56 -3.9
504,787 - HMPREF1058_RS06335 0.56 -1.6
504,819 + HMPREF1058_RS06335 0.59 -1.6
504,862 + HMPREF1058_RS06335 0.63 -2.3
504,862 + HMPREF1058_RS06335 0.63 -2.6
504,862 + HMPREF1058_RS06335 0.63 -2.3
504,862 + HMPREF1058_RS06335 0.63 -2.6
504,862 + HMPREF1058_RS06335 0.63 -0.0
504,862 + HMPREF1058_RS06335 0.63 -1.6
504,863 - HMPREF1058_RS06335 0.63 -5.3
504,863 - HMPREF1058_RS06335 0.63 -1.6
504,863 - HMPREF1058_RS06335 0.63 -0.0
504,901 - HMPREF1058_RS06335 0.67 -2.3
504,919 - HMPREF1058_RS06335 0.69 -2.8
504,919 - HMPREF1058_RS06335 0.69 -1.6
504,988 + HMPREF1058_RS06335 0.76 -2.0
504,988 + HMPREF1058_RS06335 0.76 -3.0
505,031 + HMPREF1058_RS06335 0.80 -1.6
505,031 + HMPREF1058_RS06335 0.80 -1.6
505,036 + HMPREF1058_RS06335 0.81 -1.0
505,036 + HMPREF1058_RS06335 0.81 -1.6
505,036 + HMPREF1058_RS06335 0.81 -2.8
505,037 - HMPREF1058_RS06335 0.81 -1.0
505,037 - HMPREF1058_RS06335 0.81 -3.3
505,054 + HMPREF1058_RS06335 0.83 -3.3
505,067 - HMPREF1058_RS06335 0.84 -0.0
505,067 - HMPREF1058_RS06335 0.84 -4.3
505,133 - -1.0
505,147 - -2.8
505,184 + -2.2
505,189 + -0.0
505,195 + +0.2

Or see this region's nucleotide sequence