Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04295 and HMPREF1058_RS04290 are separated by 108 nucleotides HMPREF1058_RS04290 and HMPREF1058_RS04285 are separated by 236 nucleotides
HMPREF1058_RS04295: HMPREF1058_RS04295 - 3-phosphoglycerate dehydrogenase, at 72,111 to 73,031
_RS04295
HMPREF1058_RS04290: HMPREF1058_RS04290 - DUF1015 domain-containing protein, at 73,140 to 74,387
_RS04290
HMPREF1058_RS04285: HMPREF1058_RS04285 - DMT family transporter, at 74,624 to 75,538
_RS04285
Position (kb) 73
74
75 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 72.158 kb on - strand at 72.158 kb on - strand at 72.217 kb on - strand, within HMPREF1058_RS04295 at 72.235 kb on + strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.281 kb on + strand, within HMPREF1058_RS04295 at 72.331 kb on + strand, within HMPREF1058_RS04295 at 72.332 kb on - strand, within HMPREF1058_RS04295 at 72.581 kb on + strand, within HMPREF1058_RS04295 at 72.664 kb on - strand at 72.678 kb on - strand, within HMPREF1058_RS04295 at 72.729 kb on + strand, within HMPREF1058_RS04295 at 72.763 kb on + strand, within HMPREF1058_RS04295 at 72.838 kb on + strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 73.025 kb on + strand at 73.026 kb on - strand at 73.034 kb on - strand at 73.077 kb on - strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.079 kb on - strand at 73.084 kb on - strand at 73.147 kb on + strand at 73.151 kb on - strand at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.328 kb on + strand, within HMPREF1058_RS04290 at 73.329 kb on - strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.336 kb on - strand, within HMPREF1058_RS04290 at 73.408 kb on - strand, within HMPREF1058_RS04290 at 73.411 kb on - strand, within HMPREF1058_RS04290 at 73.415 kb on - strand, within HMPREF1058_RS04290 at 73.632 kb on - strand, within HMPREF1058_RS04290 at 73.715 kb on + strand, within HMPREF1058_RS04290 at 73.717 kb on + strand, within HMPREF1058_RS04290 at 73.852 kb on - strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.906 kb on - strand, within HMPREF1058_RS04290 at 74.004 kb on + strand, within HMPREF1058_RS04290 at 74.083 kb on - strand, within HMPREF1058_RS04290 at 74.194 kb on + strand, within HMPREF1058_RS04290 at 74.316 kb on - strand at 74.375 kb on + strand at 74.463 kb on - strand at 74.498 kb on + strand at 74.515 kb on + strand at 74.515 kb on + strand at 74.583 kb on + strand at 74.630 kb on - strand at 74.641 kb on + strand at 74.641 kb on + strand at 74.711 kb on + strand at 74.713 kb on + strand at 74.766 kb on + strand, within HMPREF1058_RS04285 at 74.766 kb on + strand, within HMPREF1058_RS04285 at 74.767 kb on - strand, within HMPREF1058_RS04285 at 74.773 kb on - strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.892 kb on - strand, within HMPREF1058_RS04285 at 74.893 kb on + strand, within HMPREF1058_RS04285 at 74.893 kb on + strand, within HMPREF1058_RS04285 at 74.897 kb on + strand, within HMPREF1058_RS04285 at 74.954 kb on - strand, within HMPREF1058_RS04285 at 74.960 kb on - strand, within HMPREF1058_RS04285 at 74.970 kb on + strand, within HMPREF1058_RS04285 at 75.082 kb on + strand, within HMPREF1058_RS04285 at 75.115 kb on + strand, within HMPREF1058_RS04285 at 75.119 kb on + strand, within HMPREF1058_RS04285 at 75.120 kb on - strand, within HMPREF1058_RS04285 at 75.121 kb on + strand, within HMPREF1058_RS04285 at 75.122 kb on - strand, within HMPREF1058_RS04285 at 75.123 kb on + strand, within HMPREF1058_RS04285 at 75.179 kb on + strand, within HMPREF1058_RS04285 at 75.179 kb on + strand, within HMPREF1058_RS04285 at 75.206 kb on + strand, within HMPREF1058_RS04285 at 75.229 kb on + strand, within HMPREF1058_RS04285 at 75.302 kb on - strand, within HMPREF1058_RS04285 at 75.335 kb on + strand, within HMPREF1058_RS04285 at 75.335 kb on + strand, within HMPREF1058_RS04285 at 75.336 kb on - strand, within HMPREF1058_RS04285
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 72,158 - -1.8 72,158 - -2.4 72,217 - HMPREF1058_RS04295 0.12 +0.2 72,235 + HMPREF1058_RS04295 0.13 -2.4 72,236 - HMPREF1058_RS04295 0.14 -5.0 72,236 - HMPREF1058_RS04295 0.14 -1.8 72,281 + HMPREF1058_RS04295 0.18 +0.2 72,331 + HMPREF1058_RS04295 0.24 -1.8 72,332 - HMPREF1058_RS04295 0.24 -0.8 72,581 + HMPREF1058_RS04295 0.51 -0.5 72,664 - -1.8 72,678 - HMPREF1058_RS04295 0.62 -2.8 72,729 + HMPREF1058_RS04295 0.67 -2.4 72,763 + HMPREF1058_RS04295 0.71 -1.8 72,838 + HMPREF1058_RS04295 0.79 -1.8 72,844 - HMPREF1058_RS04295 0.80 -1.8 72,844 - HMPREF1058_RS04295 0.80 -2.1 73,025 + -2.3 73,026 - -1.8 73,034 - -0.8 73,077 - -1.4 73,078 + -3.4 73,078 + +0.3 73,078 + +1.0 73,079 - -0.8 73,084 - -2.6 73,147 + -2.4 73,151 - -2.8 73,272 + HMPREF1058_RS04290 0.11 -3.1 73,272 + HMPREF1058_RS04290 0.11 -1.4 73,328 + HMPREF1058_RS04290 0.15 -2.4 73,329 - HMPREF1058_RS04290 0.15 -2.8 73,333 + HMPREF1058_RS04290 0.15 -1.3 73,333 + HMPREF1058_RS04290 0.15 -0.8 73,336 - HMPREF1058_RS04290 0.16 +0.2 73,408 - HMPREF1058_RS04290 0.21 -2.6 73,411 - HMPREF1058_RS04290 0.22 -2.1 73,415 - HMPREF1058_RS04290 0.22 -2.4 73,632 - HMPREF1058_RS04290 0.39 -1.4 73,715 + HMPREF1058_RS04290 0.46 -3.9 73,717 + HMPREF1058_RS04290 0.46 +0.2 73,852 - HMPREF1058_RS04290 0.57 -2.2 73,857 + HMPREF1058_RS04290 0.57 -1.5 73,857 + HMPREF1058_RS04290 0.57 -2.2 73,906 - HMPREF1058_RS04290 0.61 -0.8 74,004 + HMPREF1058_RS04290 0.69 -3.2 74,083 - HMPREF1058_RS04290 0.76 -2.6 74,194 + HMPREF1058_RS04290 0.84 -2.1 74,316 - +0.2 74,375 + +0.2 74,463 - -1.4 74,498 + +2.7 74,515 + -1.6 74,515 + +0.3 74,583 + -0.1 74,630 - -0.5 74,641 + +1.5 74,641 + -2.4 74,711 + +3.7 74,713 + +0.8 74,766 + HMPREF1058_RS04285 0.16 +1.7 74,766 + HMPREF1058_RS04285 0.16 -2.6 74,767 - HMPREF1058_RS04285 0.16 +0.8 74,773 - HMPREF1058_RS04285 0.16 +1.2 74,775 + HMPREF1058_RS04285 0.17 -2.6 74,775 + HMPREF1058_RS04285 0.17 +1.8 74,775 + HMPREF1058_RS04285 0.17 +2.1 74,775 + HMPREF1058_RS04285 0.17 -1.8 74,892 - HMPREF1058_RS04285 0.29 -0.3 74,893 + HMPREF1058_RS04285 0.29 +0.2 74,893 + HMPREF1058_RS04285 0.29 -1.6 74,897 + HMPREF1058_RS04285 0.30 +3.5 74,954 - HMPREF1058_RS04285 0.36 -0.8 74,960 - HMPREF1058_RS04285 0.37 -0.4 74,970 + HMPREF1058_RS04285 0.38 +0.8 75,082 + HMPREF1058_RS04285 0.50 -0.4 75,115 + HMPREF1058_RS04285 0.54 -0.4 75,119 + HMPREF1058_RS04285 0.54 +3.0 75,120 - HMPREF1058_RS04285 0.54 +1.2 75,121 + HMPREF1058_RS04285 0.54 +0.2 75,122 - HMPREF1058_RS04285 0.54 +0.5 75,123 + HMPREF1058_RS04285 0.55 -0.4 75,179 + HMPREF1058_RS04285 0.61 -0.7 75,179 + HMPREF1058_RS04285 0.61 +2.2 75,206 + HMPREF1058_RS04285 0.64 +1.1 75,229 + HMPREF1058_RS04285 0.66 +2.2 75,302 - HMPREF1058_RS04285 0.74 -1.2 75,335 + HMPREF1058_RS04285 0.78 +1.2 75,335 + HMPREF1058_RS04285 0.78 -0.9 75,336 - HMPREF1058_RS04285 0.78 +0.2
Or see this region's nucleotide sequence