Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04075 and HMPREF1058_RS04070 are separated by 5 nucleotides HMPREF1058_RS04070 and HMPREF1058_RS04065 are separated by 19 nucleotides
HMPREF1058_RS04075: HMPREF1058_RS04075 - DUF58 domain-containing protein, at 121,241 to 122,110
_RS04075
HMPREF1058_RS04070: HMPREF1058_RS04070 - hypothetical protein, at 122,116 to 123,213
_RS04070
HMPREF1058_RS04065: HMPREF1058_RS04065 - VWA domain-containing protein, at 123,233 to 124,231
_RS04065
Position (kb) 122
123
124 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 121.220 kb on - strand at 121.228 kb on + strand at 121.228 kb on + strand at 121.229 kb on - strand at 121.229 kb on - strand at 121.231 kb on + strand at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.670 kb on + strand, within HMPREF1058_RS04075 at 121.739 kb on + strand, within HMPREF1058_RS04075 at 121.795 kb on - strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075 at 121.865 kb on + strand, within HMPREF1058_RS04075 at 122.123 kb on + strand at 122.124 kb on - strand at 122.395 kb on - strand, within HMPREF1058_RS04070 at 122.415 kb on + strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.533 kb on - strand, within HMPREF1058_RS04070 at 122.579 kb on + strand, within HMPREF1058_RS04070 at 122.613 kb on - strand, within HMPREF1058_RS04070 at 122.654 kb on - strand, within HMPREF1058_RS04070 at 122.667 kb on - strand, within HMPREF1058_RS04070 at 122.800 kb on + strand, within HMPREF1058_RS04070 at 122.939 kb on - strand, within HMPREF1058_RS04070 at 123.175 kb on + strand at 123.194 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.196 kb on + strand at 123.197 kb on - strand at 123.284 kb on + strand at 123.284 kb on + strand at 123.285 kb on - strand at 123.285 kb on - strand at 123.289 kb on - strand at 123.292 kb on - strand at 123.486 kb on + strand, within HMPREF1058_RS04065 at 123.529 kb on + strand, within HMPREF1058_RS04065 at 124.089 kb on + strand, within HMPREF1058_RS04065
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 121,220 - -4.9 121,228 + +0.6 121,228 + +0.6 121,229 - -1.8 121,229 - -2.1 121,231 + +1.8 121,670 + HMPREF1058_RS04075 0.49 -3.0 121,670 + HMPREF1058_RS04075 0.49 -2.4 121,739 + HMPREF1058_RS04075 0.57 -1.4 121,795 - HMPREF1058_RS04075 0.64 -1.4 121,865 + HMPREF1058_RS04075 0.72 -2.6 121,865 + HMPREF1058_RS04075 0.72 -3.8 122,123 + -1.8 122,124 - -1.4 122,395 - HMPREF1058_RS04070 0.25 +0.2 122,415 + HMPREF1058_RS04070 0.27 -1.8 122,533 - HMPREF1058_RS04070 0.38 +0.2 122,533 - HMPREF1058_RS04070 0.38 -1.8 122,579 + HMPREF1058_RS04070 0.42 -4.0 122,613 - HMPREF1058_RS04070 0.45 -1.4 122,654 - HMPREF1058_RS04070 0.49 -5.2 122,667 - HMPREF1058_RS04070 0.50 +0.2 122,800 + HMPREF1058_RS04070 0.62 -0.8 122,939 - HMPREF1058_RS04070 0.75 -1.8 123,175 + -1.4 123,194 + -1.8 123,196 + +0.2 123,196 + -1.4 123,196 + -1.4 123,196 + +0.4 123,196 + +0.5 123,197 - -0.8 123,284 + -3.5 123,284 + -0.8 123,285 - -0.8 123,285 - -1.8 123,289 - -1.4 123,292 - -0.8 123,486 + HMPREF1058_RS04065 0.25 -3.4 123,529 + HMPREF1058_RS04065 0.30 -2.4 124,089 + HMPREF1058_RS04065 0.86 -1.8
Or see this region's nucleotide sequence