Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04030 and HMPREF1058_RS04025 are separated by 274 nucleotides HMPREF1058_RS04025 and HMPREF1058_RS04020 are separated by 30 nucleotides
HMPREF1058_RS04030: HMPREF1058_RS04030 - universal stress protein, at 129,889 to 131,016
_RS04030
HMPREF1058_RS04025: HMPREF1058_RS04025 - hypothetical protein, at 131,291 to 132,508
_RS04025
HMPREF1058_RS04020: HMPREF1058_RS04020 - DNA gyrase subunit A, at 132,539 to 135,106
_RS04020
Position (kb) 131
132
133 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 130.341 kb on + strand, within HMPREF1058_RS04030 at 130.347 kb on - strand at 130.384 kb on - strand, within HMPREF1058_RS04030 at 130.425 kb on - strand, within HMPREF1058_RS04030 at 130.429 kb on + strand, within HMPREF1058_RS04030 at 130.431 kb on + strand, within HMPREF1058_RS04030 at 130.432 kb on - strand, within HMPREF1058_RS04030 at 130.438 kb on - strand, within HMPREF1058_RS04030 at 130.482 kb on + strand, within HMPREF1058_RS04030 at 130.502 kb on + strand, within HMPREF1058_RS04030 at 130.502 kb on + strand, within HMPREF1058_RS04030 at 130.541 kb on + strand, within HMPREF1058_RS04030 at 130.595 kb on + strand, within HMPREF1058_RS04030 at 130.595 kb on + strand, within HMPREF1058_RS04030 at 130.595 kb on + strand, within HMPREF1058_RS04030 at 130.596 kb on - strand, within HMPREF1058_RS04030 at 130.596 kb on - strand, within HMPREF1058_RS04030 at 130.597 kb on + strand, within HMPREF1058_RS04030 at 130.598 kb on - strand, within HMPREF1058_RS04030 at 130.614 kb on + strand, within HMPREF1058_RS04030 at 130.614 kb on + strand, within HMPREF1058_RS04030 at 130.614 kb on + strand, within HMPREF1058_RS04030 at 130.614 kb on + strand, within HMPREF1058_RS04030 at 130.615 kb on - strand, within HMPREF1058_RS04030 at 130.615 kb on - strand, within HMPREF1058_RS04030 at 130.615 kb on - strand, within HMPREF1058_RS04030 at 130.615 kb on - strand, within HMPREF1058_RS04030 at 130.683 kb on - strand, within HMPREF1058_RS04030 at 130.683 kb on - strand, within HMPREF1058_RS04030 at 130.703 kb on + strand, within HMPREF1058_RS04030 at 130.748 kb on + strand, within HMPREF1058_RS04030 at 130.801 kb on + strand, within HMPREF1058_RS04030 at 130.801 kb on + strand, within HMPREF1058_RS04030 at 130.833 kb on - strand, within HMPREF1058_RS04030 at 130.833 kb on - strand, within HMPREF1058_RS04030 at 130.835 kb on - strand, within HMPREF1058_RS04030 at 130.837 kb on + strand, within HMPREF1058_RS04030 at 130.837 kb on + strand, within HMPREF1058_RS04030 at 130.837 kb on + strand, within HMPREF1058_RS04030 at 130.840 kb on - strand, within HMPREF1058_RS04030 at 130.840 kb on - strand, within HMPREF1058_RS04030 at 130.886 kb on + strand, within HMPREF1058_RS04030 at 130.887 kb on - strand, within HMPREF1058_RS04030 at 130.887 kb on - strand, within HMPREF1058_RS04030 at 130.901 kb on + strand, within HMPREF1058_RS04030 at 130.944 kb on + strand at 130.980 kb on - strand at 130.989 kb on + strand at 130.993 kb on - strand at 130.998 kb on + strand at 130.998 kb on + strand at 130.998 kb on + strand at 130.999 kb on - strand at 131.003 kb on + strand at 131.204 kb on + strand at 131.218 kb on + strand at 131.230 kb on - strand at 131.230 kb on - strand at 131.232 kb on + strand at 131.233 kb on - strand at 131.290 kb on - strand at 131.301 kb on - strand at 131.351 kb on - strand at 131.381 kb on - strand at 131.415 kb on + strand, within HMPREF1058_RS04025 at 131.416 kb on - strand, within HMPREF1058_RS04025 at 131.423 kb on - strand, within HMPREF1058_RS04025 at 131.467 kb on - strand, within HMPREF1058_RS04025 at 131.599 kb on + strand, within HMPREF1058_RS04025 at 131.616 kb on + strand at 131.636 kb on + strand, within HMPREF1058_RS04025 at 131.636 kb on + strand, within HMPREF1058_RS04025 at 131.637 kb on - strand, within HMPREF1058_RS04025 at 131.637 kb on - strand, within HMPREF1058_RS04025 at 131.658 kb on + strand, within HMPREF1058_RS04025 at 131.659 kb on - strand at 131.689 kb on + strand, within HMPREF1058_RS04025 at 131.733 kb on + strand, within HMPREF1058_RS04025 at 131.734 kb on - strand, within HMPREF1058_RS04025 at 131.737 kb on - strand, within HMPREF1058_RS04025 at 131.786 kb on - strand, within HMPREF1058_RS04025 at 131.841 kb on + strand, within HMPREF1058_RS04025 at 131.842 kb on - strand, within HMPREF1058_RS04025 at 131.870 kb on - strand, within HMPREF1058_RS04025 at 131.894 kb on - strand, within HMPREF1058_RS04025 at 131.898 kb on - strand, within HMPREF1058_RS04025 at 131.898 kb on - strand, within HMPREF1058_RS04025 at 131.900 kb on - strand, within HMPREF1058_RS04025 at 131.908 kb on - strand, within HMPREF1058_RS04025 at 131.939 kb on - strand, within HMPREF1058_RS04025 at 131.949 kb on - strand, within HMPREF1058_RS04025 at 131.968 kb on - strand, within HMPREF1058_RS04025 at 131.969 kb on + strand, within HMPREF1058_RS04025 at 132.016 kb on + strand, within HMPREF1058_RS04025 at 132.030 kb on - strand, within HMPREF1058_RS04025 at 132.041 kb on + strand, within HMPREF1058_RS04025 at 132.042 kb on - strand, within HMPREF1058_RS04025 at 132.042 kb on - strand, within HMPREF1058_RS04025 at 132.079 kb on + strand, within HMPREF1058_RS04025 at 132.085 kb on - strand, within HMPREF1058_RS04025 at 132.108 kb on - strand, within HMPREF1058_RS04025 at 132.198 kb on - strand, within HMPREF1058_RS04025 at 132.216 kb on + strand, within HMPREF1058_RS04025 at 132.232 kb on + strand, within HMPREF1058_RS04025 at 132.232 kb on + strand, within HMPREF1058_RS04025 at 132.232 kb on + strand at 132.253 kb on + strand, within HMPREF1058_RS04025 at 132.370 kb on + strand, within HMPREF1058_RS04025 at 132.428 kb on - strand at 132.446 kb on + strand at 132.446 kb on + strand at 132.447 kb on - strand at 132.447 kb on - strand at 132.523 kb on - strand at 132.593 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 130,341 + HMPREF1058_RS04030 0.40 -0.7 130,347 - +0.2 130,384 - HMPREF1058_RS04030 0.44 +0.4 130,425 - HMPREF1058_RS04030 0.48 -1.8 130,429 + HMPREF1058_RS04030 0.48 -0.8 130,431 + HMPREF1058_RS04030 0.48 +0.6 130,432 - HMPREF1058_RS04030 0.48 +1.8 130,438 - HMPREF1058_RS04030 0.49 -0.8 130,482 + HMPREF1058_RS04030 0.53 +2.7 130,502 + HMPREF1058_RS04030 0.54 -1.8 130,502 + HMPREF1058_RS04030 0.54 -0.6 130,541 + HMPREF1058_RS04030 0.58 +0.9 130,595 + HMPREF1058_RS04030 0.63 +0.0 130,595 + HMPREF1058_RS04030 0.63 +0.2 130,595 + HMPREF1058_RS04030 0.63 -0.1 130,596 - HMPREF1058_RS04030 0.63 -0.4 130,596 - HMPREF1058_RS04030 0.63 -0.5 130,597 + HMPREF1058_RS04030 0.63 -0.8 130,598 - HMPREF1058_RS04030 0.63 +1.3 130,614 + HMPREF1058_RS04030 0.64 +2.3 130,614 + HMPREF1058_RS04030 0.64 +0.7 130,614 + HMPREF1058_RS04030 0.64 -1.4 130,614 + HMPREF1058_RS04030 0.64 +1.9 130,615 - HMPREF1058_RS04030 0.64 -1.4 130,615 - HMPREF1058_RS04030 0.64 +0.0 130,615 - HMPREF1058_RS04030 0.64 -0.4 130,615 - HMPREF1058_RS04030 0.64 +0.4 130,683 - HMPREF1058_RS04030 0.70 +3.4 130,683 - HMPREF1058_RS04030 0.70 -0.3 130,703 + HMPREF1058_RS04030 0.72 -1.3 130,748 + HMPREF1058_RS04030 0.76 +1.7 130,801 + HMPREF1058_RS04030 0.81 +0.2 130,801 + HMPREF1058_RS04030 0.81 +1.1 130,833 - HMPREF1058_RS04030 0.84 -0.5 130,833 - HMPREF1058_RS04030 0.84 -0.2 130,835 - HMPREF1058_RS04030 0.84 +1.8 130,837 + HMPREF1058_RS04030 0.84 -1.0 130,837 + HMPREF1058_RS04030 0.84 +0.2 130,837 + HMPREF1058_RS04030 0.84 +2.2 130,840 - HMPREF1058_RS04030 0.84 -0.1 130,840 - HMPREF1058_RS04030 0.84 +2.0 130,886 + HMPREF1058_RS04030 0.88 -1.2 130,887 - HMPREF1058_RS04030 0.88 -2.1 130,887 - HMPREF1058_RS04030 0.88 +0.0 130,901 + HMPREF1058_RS04030 0.90 +1.8 130,944 + -2.6 130,980 - +1.2 130,989 + -2.9 130,993 - +1.4 130,998 + +0.2 130,998 + -1.8 130,998 + +1.4 130,999 - +1.2 131,003 + +0.9 131,204 + +0.8 131,218 + +1.2 131,230 - -0.8 131,230 - +1.9 131,232 + -0.8 131,233 - +0.5 131,290 - +0.8 131,301 - +1.4 131,351 - -5.1 131,381 - -1.4 131,415 + HMPREF1058_RS04025 0.10 -0.8 131,416 - HMPREF1058_RS04025 0.10 -2.6 131,423 - HMPREF1058_RS04025 0.11 -0.8 131,467 - HMPREF1058_RS04025 0.14 -2.6 131,599 + HMPREF1058_RS04025 0.25 -3.0 131,616 + -1.4 131,636 + HMPREF1058_RS04025 0.28 -0.8 131,636 + HMPREF1058_RS04025 0.28 +0.2 131,637 - HMPREF1058_RS04025 0.28 -1.8 131,637 - HMPREF1058_RS04025 0.28 +0.2 131,658 + HMPREF1058_RS04025 0.30 -1.8 131,659 - -1.8 131,689 + HMPREF1058_RS04025 0.33 -1.4 131,733 + HMPREF1058_RS04025 0.36 -1.8 131,734 - HMPREF1058_RS04025 0.36 -0.8 131,737 - HMPREF1058_RS04025 0.37 -3.6 131,786 - HMPREF1058_RS04025 0.41 -1.8 131,841 + HMPREF1058_RS04025 0.45 -2.1 131,842 - HMPREF1058_RS04025 0.45 -0.8 131,870 - HMPREF1058_RS04025 0.48 -0.8 131,894 - HMPREF1058_RS04025 0.50 +0.2 131,898 - HMPREF1058_RS04025 0.50 -2.1 131,898 - HMPREF1058_RS04025 0.50 -0.8 131,900 - HMPREF1058_RS04025 0.50 -3.1 131,908 - HMPREF1058_RS04025 0.51 -0.8 131,939 - HMPREF1058_RS04025 0.53 -3.2 131,949 - HMPREF1058_RS04025 0.54 -3.5 131,968 - HMPREF1058_RS04025 0.56 -3.4 131,969 + HMPREF1058_RS04025 0.56 -0.8 132,016 + HMPREF1058_RS04025 0.60 -2.4 132,030 - HMPREF1058_RS04025 0.61 -3.1 132,041 + HMPREF1058_RS04025 0.62 -3.1 132,042 - HMPREF1058_RS04025 0.62 -2.1 132,042 - HMPREF1058_RS04025 0.62 -1.4 132,079 + HMPREF1058_RS04025 0.65 -1.4 132,085 - HMPREF1058_RS04025 0.65 -0.8 132,108 - HMPREF1058_RS04025 0.67 -2.4 132,198 - HMPREF1058_RS04025 0.74 -1.4 132,216 + HMPREF1058_RS04025 0.76 -0.8 132,232 + HMPREF1058_RS04025 0.77 +0.2 132,232 + HMPREF1058_RS04025 0.77 -0.8 132,232 + +0.2 132,253 + HMPREF1058_RS04025 0.79 -2.4 132,370 + HMPREF1058_RS04025 0.89 -1.4 132,428 - -0.8 132,446 + -2.4 132,446 + -1.8 132,447 - +0.2 132,447 - -2.1 132,523 - -3.0 132,593 - +0.5
Or see this region's nucleotide sequence