Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03210 and HMPREF1058_RS03205 are separated by 28 nucleotides HMPREF1058_RS03205 and HMPREF1058_RS03200 are separated by 253 nucleotides HMPREF1058_RS03200 and HMPREF1058_RS03195 are separated by 213 nucleotides
HMPREF1058_RS03210: HMPREF1058_RS03210 - alpha-glucan family phosphorylase, at 329,868 to 332,432
_RS03210
HMPREF1058_RS03205: HMPREF1058_RS03205 - glycogen/starch synthase, at 332,461 to 334,131
_RS03205
HMPREF1058_RS03200: HMPREF1058_RS03200 - V-type ATP synthase subunit K, at 334,385 to 334,849
_RS03200
HMPREF1058_RS03195: HMPREF1058_RS03195 - V-type ATP synthase subunit I, at 335,063 to 336,868
_RS03195
Position (kb) 332
333
334
335 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 331.497 kb on - strand, within HMPREF1058_RS03210 at 331.500 kb on + strand, within HMPREF1058_RS03210 at 331.501 kb on - strand, within HMPREF1058_RS03210 at 331.501 kb on - strand, within HMPREF1058_RS03210 at 331.518 kb on + strand, within HMPREF1058_RS03210 at 331.518 kb on + strand, within HMPREF1058_RS03210 at 331.518 kb on + strand, within HMPREF1058_RS03210 at 331.519 kb on - strand, within HMPREF1058_RS03210 at 331.559 kb on - strand, within HMPREF1058_RS03210 at 331.580 kb on + strand, within HMPREF1058_RS03210 at 331.604 kb on + strand, within HMPREF1058_RS03210 at 331.612 kb on + strand, within HMPREF1058_RS03210 at 331.666 kb on - strand, within HMPREF1058_RS03210 at 331.717 kb on + strand, within HMPREF1058_RS03210 at 331.718 kb on - strand, within HMPREF1058_RS03210 at 331.795 kb on - strand, within HMPREF1058_RS03210 at 331.795 kb on - strand, within HMPREF1058_RS03210 at 331.803 kb on + strand, within HMPREF1058_RS03210 at 331.807 kb on + strand, within HMPREF1058_RS03210 at 331.808 kb on - strand, within HMPREF1058_RS03210 at 331.808 kb on - strand, within HMPREF1058_RS03210 at 331.808 kb on - strand, within HMPREF1058_RS03210 at 331.808 kb on - strand, within HMPREF1058_RS03210 at 331.846 kb on - strand, within HMPREF1058_RS03210 at 331.872 kb on + strand, within HMPREF1058_RS03210 at 331.883 kb on + strand, within HMPREF1058_RS03210 at 331.883 kb on + strand, within HMPREF1058_RS03210 at 331.912 kb on + strand, within HMPREF1058_RS03210 at 331.913 kb on - strand, within HMPREF1058_RS03210 at 331.916 kb on + strand, within HMPREF1058_RS03210 at 331.991 kb on + strand, within HMPREF1058_RS03210 at 331.991 kb on + strand, within HMPREF1058_RS03210 at 331.991 kb on + strand, within HMPREF1058_RS03210 at 331.991 kb on + strand, within HMPREF1058_RS03210 at 331.992 kb on - strand, within HMPREF1058_RS03210 at 331.995 kb on + strand, within HMPREF1058_RS03210 at 331.995 kb on + strand, within HMPREF1058_RS03210 at 331.995 kb on + strand, within HMPREF1058_RS03210 at 331.995 kb on + strand, within HMPREF1058_RS03210 at 331.996 kb on - strand, within HMPREF1058_RS03210 at 331.996 kb on - strand, within HMPREF1058_RS03210 at 332.057 kb on - strand, within HMPREF1058_RS03210 at 332.083 kb on + strand, within HMPREF1058_RS03210 at 332.084 kb on - strand, within HMPREF1058_RS03210 at 332.130 kb on - strand, within HMPREF1058_RS03210 at 332.140 kb on + strand, within HMPREF1058_RS03210 at 332.141 kb on - strand, within HMPREF1058_RS03210 at 332.141 kb on - strand, within HMPREF1058_RS03210 at 332.158 kb on + strand, within HMPREF1058_RS03210 at 332.159 kb on - strand, within HMPREF1058_RS03210 at 332.160 kb on + strand, within HMPREF1058_RS03210 at 332.161 kb on + strand, within HMPREF1058_RS03210 at 332.161 kb on - strand, within HMPREF1058_RS03210 at 332.161 kb on - strand, within HMPREF1058_RS03210 at 332.178 kb on + strand at 332.199 kb on + strand at 332.219 kb on - strand at 332.309 kb on - strand at 332.384 kb on + strand at 332.418 kb on + strand at 332.419 kb on - strand at 332.459 kb on - strand at 332.462 kb on + strand at 332.466 kb on + strand at 332.510 kb on + strand at 332.523 kb on - strand at 332.625 kb on + strand at 332.626 kb on - strand at 332.626 kb on - strand at 332.638 kb on - strand, within HMPREF1058_RS03205 at 332.657 kb on + strand, within HMPREF1058_RS03205 at 332.663 kb on + strand, within HMPREF1058_RS03205 at 332.713 kb on - strand, within HMPREF1058_RS03205 at 332.761 kb on + strand, within HMPREF1058_RS03205 at 332.763 kb on + strand, within HMPREF1058_RS03205 at 332.764 kb on - strand, within HMPREF1058_RS03205 at 332.764 kb on - strand, within HMPREF1058_RS03205 at 332.764 kb on - strand, within HMPREF1058_RS03205 at 332.770 kb on + strand, within HMPREF1058_RS03205 at 332.783 kb on - strand, within HMPREF1058_RS03205 at 332.820 kb on - strand, within HMPREF1058_RS03205 at 332.861 kb on + strand, within HMPREF1058_RS03205 at 332.862 kb on - strand, within HMPREF1058_RS03205 at 332.862 kb on - strand, within HMPREF1058_RS03205 at 332.862 kb on - strand, within HMPREF1058_RS03205 at 332.865 kb on - strand, within HMPREF1058_RS03205 at 332.881 kb on - strand, within HMPREF1058_RS03205 at 332.881 kb on - strand, within HMPREF1058_RS03205 at 332.900 kb on + strand at 332.908 kb on + strand, within HMPREF1058_RS03205 at 332.917 kb on + strand, within HMPREF1058_RS03205 at 332.957 kb on + strand, within HMPREF1058_RS03205 at 332.958 kb on - strand, within HMPREF1058_RS03205 at 332.967 kb on + strand, within HMPREF1058_RS03205 at 332.975 kb on - strand, within HMPREF1058_RS03205 at 332.975 kb on - strand, within HMPREF1058_RS03205 at 332.992 kb on - strand, within HMPREF1058_RS03205 at 332.992 kb on - strand, within HMPREF1058_RS03205 at 332.994 kb on + strand, within HMPREF1058_RS03205 at 332.995 kb on - strand, within HMPREF1058_RS03205 at 333.101 kb on - strand, within HMPREF1058_RS03205 at 333.101 kb on - strand, within HMPREF1058_RS03205 at 333.106 kb on - strand, within HMPREF1058_RS03205 at 333.108 kb on + strand, within HMPREF1058_RS03205 at 333.170 kb on + strand, within HMPREF1058_RS03205 at 333.180 kb on + strand, within HMPREF1058_RS03205 at 333.181 kb on - strand, within HMPREF1058_RS03205 at 333.222 kb on + strand, within HMPREF1058_RS03205 at 333.258 kb on + strand, within HMPREF1058_RS03205 at 333.258 kb on + strand, within HMPREF1058_RS03205 at 333.259 kb on - strand, within HMPREF1058_RS03205 at 333.312 kb on + strand, within HMPREF1058_RS03205 at 333.313 kb on - strand, within HMPREF1058_RS03205 at 333.420 kb on + strand, within HMPREF1058_RS03205 at 333.474 kb on + strand, within HMPREF1058_RS03205 at 333.504 kb on + strand, within HMPREF1058_RS03205 at 333.504 kb on + strand, within HMPREF1058_RS03205 at 333.505 kb on - strand, within HMPREF1058_RS03205 at 333.506 kb on + strand, within HMPREF1058_RS03205 at 333.506 kb on + strand, within HMPREF1058_RS03205 at 333.514 kb on + strand, within HMPREF1058_RS03205 at 333.561 kb on + strand, within HMPREF1058_RS03205 at 333.561 kb on + strand, within HMPREF1058_RS03205 at 333.562 kb on - strand, within HMPREF1058_RS03205 at 333.593 kb on - strand, within HMPREF1058_RS03205 at 333.630 kb on + strand, within HMPREF1058_RS03205 at 333.723 kb on - strand, within HMPREF1058_RS03205 at 333.733 kb on - strand, within HMPREF1058_RS03205 at 333.802 kb on + strand, within HMPREF1058_RS03205 at 333.803 kb on - strand, within HMPREF1058_RS03205 at 333.803 kb on - strand, within HMPREF1058_RS03205 at 333.853 kb on - strand at 334.072 kb on - strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.079 kb on - strand at 334.079 kb on - strand at 334.099 kb on + strand at 334.102 kb on - strand at 334.102 kb on - strand at 334.102 kb on - strand at 334.203 kb on + strand at 334.240 kb on - strand at 334.435 kb on + strand, within HMPREF1058_RS03200 at 334.436 kb on - strand, within HMPREF1058_RS03200 at 334.440 kb on + strand, within HMPREF1058_RS03200 at 334.472 kb on - strand, within HMPREF1058_RS03200 at 334.481 kb on + strand, within HMPREF1058_RS03200 at 334.482 kb on - strand, within HMPREF1058_RS03200 at 334.486 kb on + strand, within HMPREF1058_RS03200 at 334.556 kb on + strand, within HMPREF1058_RS03200 at 334.668 kb on + strand, within HMPREF1058_RS03200 at 334.668 kb on + strand, within HMPREF1058_RS03200 at 334.748 kb on - strand, within HMPREF1058_RS03200 at 334.770 kb on - strand, within HMPREF1058_RS03200 at 334.807 kb on + strand at 334.807 kb on + strand at 334.808 kb on - strand at 334.849 kb on + strand at 334.865 kb on - strand at 334.947 kb on + strand at 334.948 kb on - strand at 334.948 kb on - strand at 334.950 kb on + strand at 334.951 kb on - strand at 334.951 kb on - strand at 334.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 331,497 - HMPREF1058_RS03210 0.64 -2.6 331,500 + HMPREF1058_RS03210 0.64 -1.4 331,501 - HMPREF1058_RS03210 0.64 -4.7 331,501 - HMPREF1058_RS03210 0.64 -1.8 331,518 + HMPREF1058_RS03210 0.64 -0.8 331,518 + HMPREF1058_RS03210 0.64 -3.5 331,518 + HMPREF1058_RS03210 0.64 -3.6 331,519 - HMPREF1058_RS03210 0.64 -3.5 331,559 - HMPREF1058_RS03210 0.66 -3.9 331,580 + HMPREF1058_RS03210 0.67 -1.4 331,604 + HMPREF1058_RS03210 0.68 -0.8 331,612 + HMPREF1058_RS03210 0.68 -4.6 331,666 - HMPREF1058_RS03210 0.70 -1.8 331,717 + HMPREF1058_RS03210 0.72 -2.4 331,718 - HMPREF1058_RS03210 0.72 -0.8 331,795 - HMPREF1058_RS03210 0.75 -4.4 331,795 - HMPREF1058_RS03210 0.75 -2.1 331,803 + HMPREF1058_RS03210 0.75 -1.8 331,807 + HMPREF1058_RS03210 0.76 -2.1 331,808 - HMPREF1058_RS03210 0.76 -4.2 331,808 - HMPREF1058_RS03210 0.76 -1.4 331,808 - HMPREF1058_RS03210 0.76 -2.6 331,808 - HMPREF1058_RS03210 0.76 -3.0 331,846 - HMPREF1058_RS03210 0.77 -4.7 331,872 + HMPREF1058_RS03210 0.78 -2.1 331,883 + HMPREF1058_RS03210 0.79 -1.8 331,883 + HMPREF1058_RS03210 0.79 -3.7 331,912 + HMPREF1058_RS03210 0.80 -2.4 331,913 - HMPREF1058_RS03210 0.80 -3.0 331,916 + HMPREF1058_RS03210 0.80 -5.4 331,991 + HMPREF1058_RS03210 0.83 -2.4 331,991 + HMPREF1058_RS03210 0.83 -4.9 331,991 + HMPREF1058_RS03210 0.83 -1.8 331,991 + HMPREF1058_RS03210 0.83 -3.2 331,992 - HMPREF1058_RS03210 0.83 -1.8 331,995 + HMPREF1058_RS03210 0.83 +0.2 331,995 + HMPREF1058_RS03210 0.83 +0.2 331,995 + HMPREF1058_RS03210 0.83 -5.3 331,995 + HMPREF1058_RS03210 0.83 -1.8 331,996 - HMPREF1058_RS03210 0.83 -1.8 331,996 - HMPREF1058_RS03210 0.83 -3.5 332,057 - HMPREF1058_RS03210 0.85 -3.0 332,083 + HMPREF1058_RS03210 0.86 -2.4 332,084 - HMPREF1058_RS03210 0.86 -2.1 332,130 - HMPREF1058_RS03210 0.88 -4.3 332,140 + HMPREF1058_RS03210 0.89 -1.8 332,141 - HMPREF1058_RS03210 0.89 -0.8 332,141 - HMPREF1058_RS03210 0.89 -0.8 332,158 + HMPREF1058_RS03210 0.89 -3.0 332,159 - HMPREF1058_RS03210 0.89 -0.8 332,160 + HMPREF1058_RS03210 0.89 -0.8 332,161 + HMPREF1058_RS03210 0.89 -3.7 332,161 - HMPREF1058_RS03210 0.89 -4.9 332,161 - HMPREF1058_RS03210 0.89 -0.8 332,178 + -3.0 332,199 + -3.1 332,219 - -3.6 332,309 - -2.4 332,384 + -4.0 332,418 + -3.5 332,419 - -3.2 332,459 - -2.4 332,462 + -1.4 332,466 + -3.1 332,510 + +0.2 332,523 - -3.8 332,625 + -2.1 332,626 - -3.5 332,626 - -4.2 332,638 - HMPREF1058_RS03205 0.11 -2.4 332,657 + HMPREF1058_RS03205 0.12 -1.8 332,663 + HMPREF1058_RS03205 0.12 -2.6 332,713 - HMPREF1058_RS03205 0.15 -2.6 332,761 + HMPREF1058_RS03205 0.18 -2.1 332,763 + HMPREF1058_RS03205 0.18 -2.1 332,764 - HMPREF1058_RS03205 0.18 -3.2 332,764 - HMPREF1058_RS03205 0.18 -3.0 332,764 - HMPREF1058_RS03205 0.18 -2.6 332,770 + HMPREF1058_RS03205 0.18 -0.8 332,783 - HMPREF1058_RS03205 0.19 -3.2 332,820 - HMPREF1058_RS03205 0.21 -3.5 332,861 + HMPREF1058_RS03205 0.24 -2.4 332,862 - HMPREF1058_RS03205 0.24 -4.0 332,862 - HMPREF1058_RS03205 0.24 -2.1 332,862 - HMPREF1058_RS03205 0.24 +0.2 332,865 - HMPREF1058_RS03205 0.24 -4.0 332,881 - HMPREF1058_RS03205 0.25 -4.1 332,881 - HMPREF1058_RS03205 0.25 -3.0 332,900 + +0.2 332,908 + HMPREF1058_RS03205 0.27 -1.8 332,917 + HMPREF1058_RS03205 0.27 -4.4 332,957 + HMPREF1058_RS03205 0.30 -2.1 332,958 - HMPREF1058_RS03205 0.30 -4.9 332,967 + HMPREF1058_RS03205 0.30 -7.3 332,975 - HMPREF1058_RS03205 0.31 -2.8 332,975 - HMPREF1058_RS03205 0.31 -1.4 332,992 - HMPREF1058_RS03205 0.32 -2.4 332,992 - HMPREF1058_RS03205 0.32 -4.0 332,994 + HMPREF1058_RS03205 0.32 +0.2 332,995 - HMPREF1058_RS03205 0.32 -3.1 333,101 - HMPREF1058_RS03205 0.38 -3.1 333,101 - HMPREF1058_RS03205 0.38 -6.1 333,106 - HMPREF1058_RS03205 0.39 -3.5 333,108 + HMPREF1058_RS03205 0.39 -2.4 333,170 + HMPREF1058_RS03205 0.42 -2.6 333,180 + HMPREF1058_RS03205 0.43 -0.8 333,181 - HMPREF1058_RS03205 0.43 -4.2 333,222 + HMPREF1058_RS03205 0.46 -3.4 333,258 + HMPREF1058_RS03205 0.48 -3.0 333,258 + HMPREF1058_RS03205 0.48 +0.2 333,259 - HMPREF1058_RS03205 0.48 -1.0 333,312 + HMPREF1058_RS03205 0.51 -4.0 333,313 - HMPREF1058_RS03205 0.51 -3.5 333,420 + HMPREF1058_RS03205 0.57 -3.4 333,474 + HMPREF1058_RS03205 0.61 -2.6 333,504 + HMPREF1058_RS03205 0.62 -1.8 333,504 + HMPREF1058_RS03205 0.62 -0.8 333,505 - HMPREF1058_RS03205 0.62 -2.1 333,506 + HMPREF1058_RS03205 0.63 -2.8 333,506 + HMPREF1058_RS03205 0.63 -1.1 333,514 + HMPREF1058_RS03205 0.63 -2.6 333,561 + HMPREF1058_RS03205 0.66 -1.4 333,561 + HMPREF1058_RS03205 0.66 -2.1 333,562 - HMPREF1058_RS03205 0.66 +0.2 333,593 - HMPREF1058_RS03205 0.68 -2.3 333,630 + HMPREF1058_RS03205 0.70 -1.4 333,723 - HMPREF1058_RS03205 0.76 -3.4 333,733 - HMPREF1058_RS03205 0.76 -3.2 333,802 + HMPREF1058_RS03205 0.80 -4.6 333,803 - HMPREF1058_RS03205 0.80 -1.4 333,803 - HMPREF1058_RS03205 0.80 -0.8 333,853 - +0.2 334,072 - -1.8 334,078 + -4.7 334,078 + -3.1 334,078 + -4.7 334,078 + -4.2 334,078 + -1.8 334,079 - -3.1 334,079 - -3.5 334,099 + -2.8 334,102 - -0.8 334,102 - -1.8 334,102 - -2.6 334,203 + +0.2 334,240 - +0.2 334,435 + HMPREF1058_RS03200 0.11 +1.8 334,436 - HMPREF1058_RS03200 0.11 +1.0 334,440 + HMPREF1058_RS03200 0.12 -0.5 334,472 - HMPREF1058_RS03200 0.19 -0.4 334,481 + HMPREF1058_RS03200 0.21 -1.4 334,482 - HMPREF1058_RS03200 0.21 -0.7 334,486 + HMPREF1058_RS03200 0.22 +0.2 334,556 + HMPREF1058_RS03200 0.37 +0.2 334,668 + HMPREF1058_RS03200 0.61 -2.4 334,668 + HMPREF1058_RS03200 0.61 -0.8 334,748 - HMPREF1058_RS03200 0.78 -1.8 334,770 - HMPREF1058_RS03200 0.83 +2.0 334,807 + +0.2 334,807 + -0.8 334,808 - -1.2 334,849 + -2.1 334,865 - -0.1 334,947 + +0.7 334,948 - -0.8 334,948 - +1.4 334,950 + -1.8 334,951 - +3.2 334,951 - +2.0 334,951 - +0.2
Or see this region's nucleotide sequence