Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03015 and HMPREF1058_RS03010 are separated by 123 nucleotides HMPREF1058_RS03010 and HMPREF1058_RS03000 are separated by 251 nucleotides HMPREF1058_RS03000 and HMPREF1058_RS02995 are separated by 12 nucleotides
HMPREF1058_RS03015: HMPREF1058_RS03015 - DUF3874 domain-containing protein, at 31,658 to 33,754
_RS03015
HMPREF1058_RS03010: HMPREF1058_RS03010 - hypothetical protein, at 33,878 to 34,312
_RS03010
HMPREF1058_RS03000: HMPREF1058_RS03000 - IMP dehydrogenase, at 34,564 to 36,039
_RS03000
HMPREF1058_RS02995: HMPREF1058_RS02995 - peptidylprolyl isomerase, at 36,052 to 37,389
_RS02995
Position (kb) 34
35
36
37 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 33.783 kb on + strand at 33.784 kb on - strand at 33.784 kb on - strand at 33.831 kb on + strand at 34.040 kb on - strand, within HMPREF1058_RS03010 at 34.188 kb on - strand, within HMPREF1058_RS03010 at 34.340 kb on - strand at 34.373 kb on + strand at 34.423 kb on + strand at 34.526 kb on - strand at 34.540 kb on + strand at 34.564 kb on - strand at 34.572 kb on + strand at 34.572 kb on + strand at 34.573 kb on - strand at 34.573 kb on - strand at 34.616 kb on + strand at 34.617 kb on - strand at 34.617 kb on - strand at 34.823 kb on + strand, within HMPREF1058_RS03000 at 34.858 kb on + strand, within HMPREF1058_RS03000 at 34.960 kb on + strand, within HMPREF1058_RS03000 at 34.961 kb on - strand, within HMPREF1058_RS03000 at 34.968 kb on - strand, within HMPREF1058_RS03000 at 34.971 kb on + strand, within HMPREF1058_RS03000 at 35.020 kb on - strand, within HMPREF1058_RS03000 at 35.160 kb on + strand, within HMPREF1058_RS03000 at 35.160 kb on + strand, within HMPREF1058_RS03000 at 35.161 kb on - strand, within HMPREF1058_RS03000 at 35.173 kb on - strand, within HMPREF1058_RS03000 at 35.176 kb on - strand, within HMPREF1058_RS03000 at 35.388 kb on + strand, within HMPREF1058_RS03000 at 35.397 kb on - strand, within HMPREF1058_RS03000 at 35.401 kb on - strand, within HMPREF1058_RS03000 at 35.481 kb on + strand, within HMPREF1058_RS03000 at 35.537 kb on - strand, within HMPREF1058_RS03000 at 35.568 kb on + strand, within HMPREF1058_RS03000 at 35.568 kb on + strand, within HMPREF1058_RS03000 at 35.569 kb on - strand, within HMPREF1058_RS03000 at 35.640 kb on + strand, within HMPREF1058_RS03000 at 35.641 kb on - strand, within HMPREF1058_RS03000 at 35.692 kb on - strand, within HMPREF1058_RS03000 at 35.776 kb on + strand, within HMPREF1058_RS03000 at 35.838 kb on - strand, within HMPREF1058_RS03000 at 35.838 kb on - strand, within HMPREF1058_RS03000 at 35.924 kb on + strand at 35.924 kb on + strand at 35.924 kb on + strand at 35.925 kb on - strand at 35.925 kb on - strand at 35.958 kb on + strand at 35.959 kb on - strand at 35.972 kb on + strand at 36.022 kb on + strand at 36.023 kb on - strand at 36.044 kb on + strand at 36.131 kb on + strand at 36.175 kb on + strand at 36.234 kb on + strand, within HMPREF1058_RS02995 at 36.234 kb on + strand, within HMPREF1058_RS02995 at 36.239 kb on + strand, within HMPREF1058_RS02995 at 36.245 kb on + strand, within HMPREF1058_RS02995 at 36.261 kb on + strand, within HMPREF1058_RS02995 at 36.270 kb on - strand, within HMPREF1058_RS02995 at 36.273 kb on + strand, within HMPREF1058_RS02995 at 36.273 kb on + strand, within HMPREF1058_RS02995 at 36.274 kb on - strand, within HMPREF1058_RS02995 at 36.274 kb on - strand, within HMPREF1058_RS02995 at 36.439 kb on + strand, within HMPREF1058_RS02995 at 36.503 kb on - strand, within HMPREF1058_RS02995 at 36.684 kb on + strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.697 kb on - strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.786 kb on + strand, within HMPREF1058_RS02995 at 36.787 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995 at 36.953 kb on - strand, within HMPREF1058_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 33,783 + -0.8 33,784 - +0.6 33,784 - +2.2 33,831 + -0.3 34,040 - HMPREF1058_RS03010 0.37 +0.9 34,188 - HMPREF1058_RS03010 0.71 +0.9 34,340 - +2.1 34,373 + -0.1 34,423 + -0.6 34,526 - -4.1 34,540 + +2.7 34,564 - -3.1 34,572 + -3.1 34,572 + -1.1 34,573 - -2.9 34,573 - -4.1 34,616 + -3.8 34,617 - -1.1 34,617 - -0.1 34,823 + HMPREF1058_RS03000 0.18 -2.4 34,858 + HMPREF1058_RS03000 0.20 -1.1 34,960 + HMPREF1058_RS03000 0.27 -5.4 34,961 - HMPREF1058_RS03000 0.27 -3.7 34,968 - HMPREF1058_RS03000 0.27 -2.9 34,971 + HMPREF1058_RS03000 0.28 -3.1 35,020 - HMPREF1058_RS03000 0.31 -1.1 35,160 + HMPREF1058_RS03000 0.40 -2.9 35,160 + HMPREF1058_RS03000 0.40 -1.7 35,161 - HMPREF1058_RS03000 0.40 -2.9 35,173 - HMPREF1058_RS03000 0.41 -1.1 35,176 - HMPREF1058_RS03000 0.41 -3.6 35,388 + HMPREF1058_RS03000 0.56 -4.9 35,397 - HMPREF1058_RS03000 0.56 -2.4 35,401 - HMPREF1058_RS03000 0.57 -2.9 35,481 + HMPREF1058_RS03000 0.62 -4.9 35,537 - HMPREF1058_RS03000 0.66 -0.1 35,568 + HMPREF1058_RS03000 0.68 -3.7 35,568 + HMPREF1058_RS03000 0.68 -2.9 35,569 - HMPREF1058_RS03000 0.68 -2.9 35,640 + HMPREF1058_RS03000 0.73 -4.0 35,641 - HMPREF1058_RS03000 0.73 -1.7 35,692 - HMPREF1058_RS03000 0.76 -0.1 35,776 + HMPREF1058_RS03000 0.82 -3.7 35,838 - HMPREF1058_RS03000 0.86 -3.4 35,838 - HMPREF1058_RS03000 0.86 -2.1 35,924 + -2.1 35,924 + -2.9 35,924 + -2.4 35,925 - -1.7 35,925 - -2.1 35,958 + -4.8 35,959 - -2.9 35,972 + -0.1 36,022 + -1.1 36,023 - -0.5 36,044 + +0.3 36,131 + -1.7 36,175 + -0.5 36,234 + HMPREF1058_RS02995 0.14 -1.1 36,234 + HMPREF1058_RS02995 0.14 +1.3 36,239 + HMPREF1058_RS02995 0.14 +0.6 36,245 + HMPREF1058_RS02995 0.14 +0.2 36,261 + HMPREF1058_RS02995 0.16 +1.5 36,270 - HMPREF1058_RS02995 0.16 -0.3 36,273 + HMPREF1058_RS02995 0.17 +0.1 36,273 + HMPREF1058_RS02995 0.17 +1.2 36,274 - HMPREF1058_RS02995 0.17 -1.1 36,274 - HMPREF1058_RS02995 0.17 +0.5 36,439 + HMPREF1058_RS02995 0.29 -0.1 36,503 - HMPREF1058_RS02995 0.34 +1.2 36,684 + HMPREF1058_RS02995 0.47 +2.0 36,697 - HMPREF1058_RS02995 0.48 -0.1 36,697 - HMPREF1058_RS02995 0.48 +0.2 36,697 - HMPREF1058_RS02995 0.48 -0.5 36,786 + HMPREF1058_RS02995 0.55 -0.2 36,786 + HMPREF1058_RS02995 0.55 +0.7 36,787 - HMPREF1058_RS02995 0.55 -1.1 36,953 - HMPREF1058_RS02995 0.67 +1.0 36,953 - HMPREF1058_RS02995 0.67 -0.3
Or see this region's nucleotide sequence