Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02945

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS02955 and HMPREF1058_RS02950 are separated by 29 nucleotidesHMPREF1058_RS02950 and HMPREF1058_RS02945 are separated by 11 nucleotidesHMPREF1058_RS02945 and HMPREF1058_RS02940 are separated by 36 nucleotides HMPREF1058_RS02955: HMPREF1058_RS02955 - SLC13/DASS family transporter, at 45,812 to 47,365 _RS02955 HMPREF1058_RS02950: HMPREF1058_RS02950 - adenylyl-sulfate kinase, at 47,395 to 48,009 _RS02950 HMPREF1058_RS02945: HMPREF1058_RS02945 - sulfate adenylyltransferase subunit CysD, at 48,021 to 48,932 _RS02945 HMPREF1058_RS02940: HMPREF1058_RS02940 - sulfate adenylyltransferase subunit CysN, at 48,969 to 50,426 _RS02940 Position (kb) 48 49Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 47.039 kb on + strand, within HMPREF1058_RS02955at 47.243 kb on - strandat 47.272 kb on + strandat 47.273 kb on - strandat 47.290 kb on - strandat 47.311 kb on + strandat 47.313 kb on + strandat 47.324 kb on - strandat 47.373 kb on - strandat 47.409 kb on + strandat 47.411 kb on + strandat 47.412 kb on - strandat 47.414 kb on - strandat 47.414 kb on - strandat 47.418 kb on + strandat 47.418 kb on + strandat 47.419 kb on - strandat 47.479 kb on - strand, within HMPREF1058_RS02950at 47.518 kb on - strand, within HMPREF1058_RS02950at 47.521 kb on - strand, within HMPREF1058_RS02950at 47.521 kb on - strand, within HMPREF1058_RS02950at 47.521 kb on - strand, within HMPREF1058_RS02950at 47.546 kb on + strand, within HMPREF1058_RS02950at 47.547 kb on - strand, within HMPREF1058_RS02950at 47.550 kb on + strand, within HMPREF1058_RS02950at 47.551 kb on - strand, within HMPREF1058_RS02950at 47.589 kb on + strand, within HMPREF1058_RS02950at 47.667 kb on - strand, within HMPREF1058_RS02950at 47.783 kb on - strand, within HMPREF1058_RS02950at 47.802 kb on - strand, within HMPREF1058_RS02950at 47.834 kb on - strand, within HMPREF1058_RS02950at 47.912 kb on + strand, within HMPREF1058_RS02950at 47.955 kb on + strandat 48.007 kb on + strandat 48.078 kb on - strandat 48.123 kb on + strand, within HMPREF1058_RS02945at 48.124 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.126 kb on - strand, within HMPREF1058_RS02945at 48.241 kb on + strand, within HMPREF1058_RS02945at 48.242 kb on - strand, within HMPREF1058_RS02945at 48.297 kb on - strand, within HMPREF1058_RS02945at 48.299 kb on + strand, within HMPREF1058_RS02945at 48.323 kb on - strand, within HMPREF1058_RS02945at 48.399 kb on + strand, within HMPREF1058_RS02945at 48.465 kb on - strand, within HMPREF1058_RS02945at 48.542 kb on + strand, within HMPREF1058_RS02945at 48.543 kb on - strand, within HMPREF1058_RS02945at 48.635 kb on + strand, within HMPREF1058_RS02945at 48.678 kb on - strand, within HMPREF1058_RS02945at 48.931 kb on - strandat 48.943 kb on - strandat 48.997 kb on - strandat 49.004 kb on + strandat 49.224 kb on - strand, within HMPREF1058_RS02940at 49.224 kb on - strand, within HMPREF1058_RS02940at 49.245 kb on + strandat 49.302 kb on + strand, within HMPREF1058_RS02940at 49.303 kb on - strand, within HMPREF1058_RS02940at 49.303 kb on - strand, within HMPREF1058_RS02940at 49.331 kb on + strand, within HMPREF1058_RS02940at 49.598 kb on + strand, within HMPREF1058_RS02940at 49.608 kb on + strand, within HMPREF1058_RS02940at 49.617 kb on - strand, within HMPREF1058_RS02940at 49.617 kb on - strand, within HMPREF1058_RS02940at 49.664 kb on + strand, within HMPREF1058_RS02940at 49.700 kb on - strand, within HMPREF1058_RS02940at 49.760 kb on + strand, within HMPREF1058_RS02940at 49.806 kb on - strand, within HMPREF1058_RS02940at 49.814 kb on + strand, within HMPREF1058_RS02940at 49.815 kb on - strand, within HMPREF1058_RS02940at 49.815 kb on - strand, within HMPREF1058_RS02940at 49.815 kb on - strand, within HMPREF1058_RS02940at 49.907 kb on + strand, within HMPREF1058_RS02940at 49.908 kb on - strand, within HMPREF1058_RS02940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
remove
47,039 + HMPREF1058_RS02955 0.79 -3.0
47,243 - -0.8
47,272 + +0.6
47,273 - -0.9
47,290 - -1.7
47,311 + -0.5
47,313 + +0.4
47,324 - -0.9
47,373 - +0.5
47,409 + -5.7
47,411 + -4.0
47,412 - +0.5
47,414 - -0.7
47,414 - -1.7
47,418 + -1.8
47,418 + -1.7
47,419 - -2.4
47,479 - HMPREF1058_RS02950 0.14 +1.2
47,518 - HMPREF1058_RS02950 0.20 -0.7
47,521 - HMPREF1058_RS02950 0.20 -0.3
47,521 - HMPREF1058_RS02950 0.20 +0.8
47,521 - HMPREF1058_RS02950 0.20 -2.7
47,546 + HMPREF1058_RS02950 0.25 +0.7
47,547 - HMPREF1058_RS02950 0.25 -2.4
47,550 + HMPREF1058_RS02950 0.25 -3.0
47,551 - HMPREF1058_RS02950 0.25 -0.6
47,589 + HMPREF1058_RS02950 0.32 +0.0
47,667 - HMPREF1058_RS02950 0.44 -2.1
47,783 - HMPREF1058_RS02950 0.63 -0.9
47,802 - HMPREF1058_RS02950 0.66 -1.3
47,834 - HMPREF1058_RS02950 0.71 -0.3
47,912 + HMPREF1058_RS02950 0.84 -0.3
47,955 + +2.2
48,007 + +0.5
48,078 - +1.9
48,123 + HMPREF1058_RS02945 0.11 -0.9
48,124 - HMPREF1058_RS02945 0.11 -1.8
48,126 - HMPREF1058_RS02945 0.12 -0.8
48,126 - HMPREF1058_RS02945 0.12 -2.2
48,126 - HMPREF1058_RS02945 0.12 -2.6
48,126 - HMPREF1058_RS02945 0.12 -2.0
48,241 + HMPREF1058_RS02945 0.24 -2.7
48,242 - HMPREF1058_RS02945 0.24 -1.7
48,297 - HMPREF1058_RS02945 0.30 -0.8
48,299 + HMPREF1058_RS02945 0.30 +0.6
48,323 - HMPREF1058_RS02945 0.33 +0.5
48,399 + HMPREF1058_RS02945 0.41 -0.8
48,465 - HMPREF1058_RS02945 0.49 +0.1
48,542 + HMPREF1058_RS02945 0.57 -0.6
48,543 - HMPREF1058_RS02945 0.57 -0.5
48,635 + HMPREF1058_RS02945 0.67 -0.8
48,678 - HMPREF1058_RS02945 0.72 -0.7
48,931 - -0.1
48,943 - +0.5
48,997 - -0.4
49,004 + -0.2
49,224 - HMPREF1058_RS02940 0.17 +0.3
49,224 - HMPREF1058_RS02940 0.17 -0.7
49,245 + -0.7
49,302 + HMPREF1058_RS02940 0.23 -3.1
49,303 - HMPREF1058_RS02940 0.23 -1.7
49,303 - HMPREF1058_RS02940 0.23 +0.3
49,331 + HMPREF1058_RS02940 0.25 -0.7
49,598 + HMPREF1058_RS02940 0.43 -0.3
49,608 + HMPREF1058_RS02940 0.44 -1.1
49,617 - HMPREF1058_RS02940 0.44 -4.8
49,617 - HMPREF1058_RS02940 0.44 -0.1
49,664 + HMPREF1058_RS02940 0.48 -1.4
49,700 - HMPREF1058_RS02940 0.50 +1.3
49,760 + HMPREF1058_RS02940 0.54 +0.2
49,806 - HMPREF1058_RS02940 0.57 -0.2
49,814 + HMPREF1058_RS02940 0.58 -0.6
49,815 - HMPREF1058_RS02940 0.58 -1.4
49,815 - HMPREF1058_RS02940 0.58 -0.9
49,815 - HMPREF1058_RS02940 0.58 +0.9
49,907 + HMPREF1058_RS02940 0.64 -3.0
49,908 - HMPREF1058_RS02940 0.64 -0.8

Or see this region's nucleotide sequence