Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02690

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS02695 and HMPREF1058_RS02690 are separated by 12 nucleotidesHMPREF1058_RS02690 and HMPREF1058_RS02685 are separated by 7 nucleotides HMPREF1058_RS02695: HMPREF1058_RS02695 - fucose isomerase, at 123,287 to 124,711 _RS02695 HMPREF1058_RS02690: HMPREF1058_RS02690 - membrane protein, at 124,724 to 125,740 _RS02690 HMPREF1058_RS02685: HMPREF1058_RS02685 - substrate-binding domain-containing protein, at 125,748 to 126,596 _RS02685 Position (kb) 124 125 126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 123.736 kb on + strand, within HMPREF1058_RS02695at 123.736 kb on + strand, within HMPREF1058_RS02695at 123.737 kb on - strand, within HMPREF1058_RS02695at 123.737 kb on - strand, within HMPREF1058_RS02695at 123.775 kb on + strand, within HMPREF1058_RS02695at 123.778 kb on + strand, within HMPREF1058_RS02695at 123.975 kb on + strand, within HMPREF1058_RS02695at 124.025 kb on + strand, within HMPREF1058_RS02695at 124.026 kb on - strand, within HMPREF1058_RS02695at 124.026 kb on - strand, within HMPREF1058_RS02695at 124.104 kb on + strand, within HMPREF1058_RS02695at 124.104 kb on + strandat 124.139 kb on + strand, within HMPREF1058_RS02695at 124.162 kb on + strand, within HMPREF1058_RS02695at 124.228 kb on + strand, within HMPREF1058_RS02695at 124.232 kb on + strand, within HMPREF1058_RS02695at 124.233 kb on - strand, within HMPREF1058_RS02695at 124.233 kb on - strand, within HMPREF1058_RS02695at 124.318 kb on + strand, within HMPREF1058_RS02695at 124.378 kb on - strand, within HMPREF1058_RS02695at 124.399 kb on - strand, within HMPREF1058_RS02695at 124.407 kb on + strand, within HMPREF1058_RS02695at 124.407 kb on + strand, within HMPREF1058_RS02695at 124.408 kb on - strand, within HMPREF1058_RS02695at 124.412 kb on - strand, within HMPREF1058_RS02695at 124.412 kb on - strand, within HMPREF1058_RS02695at 124.493 kb on - strand, within HMPREF1058_RS02695at 124.493 kb on - strand, within HMPREF1058_RS02695at 124.552 kb on + strand, within HMPREF1058_RS02695at 124.552 kb on + strand, within HMPREF1058_RS02695at 124.552 kb on + strand, within HMPREF1058_RS02695at 124.553 kb on - strand, within HMPREF1058_RS02695at 124.553 kb on - strand, within HMPREF1058_RS02695at 124.553 kb on - strand, within HMPREF1058_RS02695at 124.669 kb on + strandat 124.697 kb on + strandat 124.738 kb on + strandat 124.738 kb on + strandat 124.742 kb on + strandat 124.848 kb on - strand, within HMPREF1058_RS02690at 124.848 kb on - strand, within HMPREF1058_RS02690at 124.910 kb on - strand, within HMPREF1058_RS02690at 124.973 kb on + strand, within HMPREF1058_RS02690at 125.014 kb on - strand, within HMPREF1058_RS02690at 125.093 kb on - strand, within HMPREF1058_RS02690at 125.093 kb on - strand, within HMPREF1058_RS02690at 125.098 kb on - strand, within HMPREF1058_RS02690at 125.105 kb on + strand, within HMPREF1058_RS02690at 125.184 kb on + strand, within HMPREF1058_RS02690at 125.184 kb on + strand, within HMPREF1058_RS02690at 125.185 kb on - strand, within HMPREF1058_RS02690at 125.185 kb on - strand, within HMPREF1058_RS02690at 125.185 kb on - strand, within HMPREF1058_RS02690at 125.185 kb on - strand, within HMPREF1058_RS02690at 125.188 kb on + strand, within HMPREF1058_RS02690at 125.284 kb on + strand, within HMPREF1058_RS02690at 125.330 kb on + strand, within HMPREF1058_RS02690at 125.410 kb on + strand, within HMPREF1058_RS02690at 125.410 kb on + strand, within HMPREF1058_RS02690at 125.471 kb on + strandat 125.546 kb on - strand, within HMPREF1058_RS02690at 125.705 kb on - strandat 125.718 kb on + strandat 125.725 kb on + strandat 125.726 kb on - strandat 125.726 kb on - strandat 125.762 kb on + strandat 125.776 kb on + strandat 125.776 kb on + strandat 125.894 kb on - strand, within HMPREF1058_RS02685at 125.951 kb on - strand, within HMPREF1058_RS02685at 126.128 kb on - strand, within HMPREF1058_RS02685at 126.165 kb on - strand, within HMPREF1058_RS02685at 126.342 kb on + strand, within HMPREF1058_RS02685at 126.342 kb on + strand, within HMPREF1058_RS02685at 126.483 kb on - strand, within HMPREF1058_RS02685at 126.532 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
remove
123,736 + HMPREF1058_RS02695 0.32 -1.1
123,736 + HMPREF1058_RS02695 0.32 +0.5
123,737 - HMPREF1058_RS02695 0.32 -0.1
123,737 - HMPREF1058_RS02695 0.32 +0.9
123,775 + HMPREF1058_RS02695 0.34 -0.2
123,778 + HMPREF1058_RS02695 0.34 +0.9
123,975 + HMPREF1058_RS02695 0.48 -0.9
124,025 + HMPREF1058_RS02695 0.52 +0.3
124,026 - HMPREF1058_RS02695 0.52 +2.6
124,026 - HMPREF1058_RS02695 0.52 +0.9
124,104 + HMPREF1058_RS02695 0.57 +2.3
124,104 + +2.1
124,139 + HMPREF1058_RS02695 0.60 +0.1
124,162 + HMPREF1058_RS02695 0.61 +1.8
124,228 + HMPREF1058_RS02695 0.66 -1.0
124,232 + HMPREF1058_RS02695 0.66 -1.7
124,233 - HMPREF1058_RS02695 0.66 -1.7
124,233 - HMPREF1058_RS02695 0.66 -0.1
124,318 + HMPREF1058_RS02695 0.72 -0.1
124,378 - HMPREF1058_RS02695 0.77 -0.1
124,399 - HMPREF1058_RS02695 0.78 +0.2
124,407 + HMPREF1058_RS02695 0.79 +0.7
124,407 + HMPREF1058_RS02695 0.79 +1.0
124,408 - HMPREF1058_RS02695 0.79 +0.7
124,412 - HMPREF1058_RS02695 0.79 +0.3
124,412 - HMPREF1058_RS02695 0.79 +1.9
124,493 - HMPREF1058_RS02695 0.85 +0.8
124,493 - HMPREF1058_RS02695 0.85 +0.6
124,552 + HMPREF1058_RS02695 0.89 -1.1
124,552 + HMPREF1058_RS02695 0.89 -0.1
124,552 + HMPREF1058_RS02695 0.89 -1.4
124,553 - HMPREF1058_RS02695 0.89 +0.3
124,553 - HMPREF1058_RS02695 0.89 +0.3
124,553 - HMPREF1058_RS02695 0.89 -0.0
124,669 + +1.3
124,697 + -3.4
124,738 + +1.3
124,738 + -0.7
124,742 + +2.1
124,848 - HMPREF1058_RS02690 0.12 +1.6
124,848 - HMPREF1058_RS02690 0.12 -2.4
124,910 - HMPREF1058_RS02690 0.18 +0.2
124,973 + HMPREF1058_RS02690 0.24 +1.5
125,014 - HMPREF1058_RS02690 0.29 +1.0
125,093 - HMPREF1058_RS02690 0.36 +0.9
125,093 - HMPREF1058_RS02690 0.36 +2.5
125,098 - HMPREF1058_RS02690 0.37 +0.5
125,105 + HMPREF1058_RS02690 0.37 -1.1
125,184 + HMPREF1058_RS02690 0.45 +0.8
125,184 + HMPREF1058_RS02690 0.45 -0.9
125,185 - HMPREF1058_RS02690 0.45 -1.7
125,185 - HMPREF1058_RS02690 0.45 -1.1
125,185 - HMPREF1058_RS02690 0.45 -2.1
125,185 - HMPREF1058_RS02690 0.45 +1.6
125,188 + HMPREF1058_RS02690 0.46 -0.8
125,284 + HMPREF1058_RS02690 0.55 +0.7
125,330 + HMPREF1058_RS02690 0.60 +1.9
125,410 + HMPREF1058_RS02690 0.67 -0.7
125,410 + HMPREF1058_RS02690 0.67 +0.0
125,471 + -1.7
125,546 - HMPREF1058_RS02690 0.81 +0.7
125,705 - -0.4
125,718 + +0.9
125,725 + +0.3
125,726 - +1.3
125,726 - +1.5
125,762 + -1.1
125,776 + -0.8
125,776 + +2.2
125,894 - HMPREF1058_RS02685 0.17 -0.1
125,951 - HMPREF1058_RS02685 0.24 +0.3
126,128 - HMPREF1058_RS02685 0.45 +1.6
126,165 - HMPREF1058_RS02685 0.49 +1.0
126,342 + HMPREF1058_RS02685 0.70 +0.7
126,342 + HMPREF1058_RS02685 0.70 +3.1
126,483 - HMPREF1058_RS02685 0.87 +0.6
126,532 + -3.9

Or see this region's nucleotide sequence