Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02175 and HMPREF1058_RS02170 are separated by 214 nucleotides HMPREF1058_RS02170 and HMPREF1058_RS02165 are separated by 156 nucleotides
HMPREF1058_RS02175: HMPREF1058_RS02175 - TolC family protein, at 264,443 to 265,906
_RS02175
HMPREF1058_RS02170: HMPREF1058_RS02170 - hypothetical protein, at 266,121 to 266,993
_RS02170
HMPREF1058_RS02165: HMPREF1058_RS02165 - malate dehydrogenase, at 267,150 to 268,091
_RS02165
Position (kb) 266
267 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 265.125 kb on - strand, within HMPREF1058_RS02175 at 265.136 kb on + strand, within HMPREF1058_RS02175 at 265.137 kb on - strand, within HMPREF1058_RS02175 at 265.172 kb on + strand, within HMPREF1058_RS02175 at 265.185 kb on - strand, within HMPREF1058_RS02175 at 265.384 kb on - strand, within HMPREF1058_RS02175 at 265.397 kb on - strand, within HMPREF1058_RS02175 at 265.401 kb on + strand, within HMPREF1058_RS02175 at 265.458 kb on + strand, within HMPREF1058_RS02175 at 265.458 kb on + strand, within HMPREF1058_RS02175 at 265.458 kb on + strand, within HMPREF1058_RS02175 at 265.458 kb on + strand, within HMPREF1058_RS02175 at 265.459 kb on - strand, within HMPREF1058_RS02175 at 265.463 kb on - strand, within HMPREF1058_RS02175 at 265.560 kb on - strand, within HMPREF1058_RS02175 at 265.628 kb on - strand, within HMPREF1058_RS02175 at 265.634 kb on + strand, within HMPREF1058_RS02175 at 265.698 kb on + strand, within HMPREF1058_RS02175 at 265.698 kb on + strand, within HMPREF1058_RS02175 at 265.699 kb on - strand, within HMPREF1058_RS02175 at 265.707 kb on - strand, within HMPREF1058_RS02175 at 265.729 kb on - strand, within HMPREF1058_RS02175 at 265.828 kb on + strand at 265.832 kb on + strand at 265.832 kb on + strand at 265.833 kb on - strand at 265.833 kb on - strand at 265.861 kb on + strand at 265.865 kb on + strand at 265.866 kb on - strand at 265.877 kb on - strand at 266.023 kb on + strand at 266.024 kb on - strand at 266.030 kb on - strand at 266.122 kb on + strand at 266.183 kb on - strand at 266.200 kb on + strand at 266.282 kb on + strand, within HMPREF1058_RS02170 at 266.325 kb on + strand, within HMPREF1058_RS02170 at 266.348 kb on + strand, within HMPREF1058_RS02170 at 266.353 kb on - strand, within HMPREF1058_RS02170 at 266.353 kb on - strand, within HMPREF1058_RS02170 at 266.353 kb on - strand, within HMPREF1058_RS02170 at 266.353 kb on - strand at 266.356 kb on + strand, within HMPREF1058_RS02170 at 266.356 kb on + strand, within HMPREF1058_RS02170 at 266.357 kb on - strand, within HMPREF1058_RS02170 at 266.357 kb on - strand, within HMPREF1058_RS02170 at 266.450 kb on + strand, within HMPREF1058_RS02170 at 266.478 kb on - strand, within HMPREF1058_RS02170 at 266.576 kb on - strand, within HMPREF1058_RS02170 at 266.638 kb on - strand, within HMPREF1058_RS02170 at 266.650 kb on + strand, within HMPREF1058_RS02170 at 266.651 kb on - strand, within HMPREF1058_RS02170 at 266.651 kb on - strand, within HMPREF1058_RS02170 at 266.651 kb on - strand, within HMPREF1058_RS02170 at 266.670 kb on + strand, within HMPREF1058_RS02170 at 266.671 kb on - strand, within HMPREF1058_RS02170 at 266.733 kb on + strand, within HMPREF1058_RS02170 at 266.843 kb on + strand, within HMPREF1058_RS02170 at 266.846 kb on - strand, within HMPREF1058_RS02170 at 267.021 kb on + strand at 267.027 kb on - strand at 267.036 kb on - strand at 267.105 kb on + strand at 267.150 kb on - strand at 267.150 kb on - strand at 267.166 kb on + strand at 267.184 kb on + strand at 267.184 kb on + strand at 267.184 kb on + strand at 267.184 kb on + strand at 267.235 kb on + strand at 267.236 kb on - strand at 267.238 kb on + strand at 267.284 kb on + strand, within HMPREF1058_RS02165 at 267.329 kb on - strand, within HMPREF1058_RS02165 at 267.435 kb on - strand, within HMPREF1058_RS02165 at 267.467 kb on + strand, within HMPREF1058_RS02165 at 267.472 kb on + strand, within HMPREF1058_RS02165 at 267.492 kb on - strand, within HMPREF1058_RS02165 at 267.499 kb on + strand, within HMPREF1058_RS02165 at 267.500 kb on - strand, within HMPREF1058_RS02165 at 267.500 kb on - strand, within HMPREF1058_RS02165 at 267.524 kb on + strand, within HMPREF1058_RS02165 at 267.524 kb on + strand, within HMPREF1058_RS02165 at 267.524 kb on + strand, within HMPREF1058_RS02165 at 267.525 kb on - strand, within HMPREF1058_RS02165 at 267.531 kb on + strand, within HMPREF1058_RS02165 at 267.531 kb on + strand, within HMPREF1058_RS02165 at 267.532 kb on - strand, within HMPREF1058_RS02165 at 267.566 kb on + strand, within HMPREF1058_RS02165 at 267.683 kb on + strand, within HMPREF1058_RS02165 at 267.684 kb on - strand, within HMPREF1058_RS02165 at 267.686 kb on + strand, within HMPREF1058_RS02165 at 267.686 kb on + strand, within HMPREF1058_RS02165 at 267.687 kb on - strand, within HMPREF1058_RS02165 at 267.690 kb on - strand, within HMPREF1058_RS02165 at 267.718 kb on - strand, within HMPREF1058_RS02165 at 267.718 kb on - strand, within HMPREF1058_RS02165 at 267.779 kb on + strand, within HMPREF1058_RS02165 at 267.831 kb on + strand, within HMPREF1058_RS02165 at 267.925 kb on - strand, within HMPREF1058_RS02165 at 267.939 kb on - strand, within HMPREF1058_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 265,125 - HMPREF1058_RS02175 0.47 -0.6 265,136 + HMPREF1058_RS02175 0.47 +0.1 265,137 - HMPREF1058_RS02175 0.47 +0.1 265,172 + HMPREF1058_RS02175 0.50 +0.3 265,185 - HMPREF1058_RS02175 0.51 -1.0 265,384 - HMPREF1058_RS02175 0.64 -2.4 265,397 - HMPREF1058_RS02175 0.65 -0.6 265,401 + HMPREF1058_RS02175 0.65 -1.2 265,458 + HMPREF1058_RS02175 0.69 -1.0 265,458 + HMPREF1058_RS02175 0.69 +0.8 265,458 + HMPREF1058_RS02175 0.69 -0.0 265,458 + HMPREF1058_RS02175 0.69 -0.1 265,459 - HMPREF1058_RS02175 0.69 +0.2 265,463 - HMPREF1058_RS02175 0.70 +1.1 265,560 - HMPREF1058_RS02175 0.76 +1.6 265,628 - HMPREF1058_RS02175 0.81 -1.0 265,634 + HMPREF1058_RS02175 0.81 +1.4 265,698 + HMPREF1058_RS02175 0.86 -0.5 265,698 + HMPREF1058_RS02175 0.86 -0.1 265,699 - HMPREF1058_RS02175 0.86 -0.1 265,707 - HMPREF1058_RS02175 0.86 -2.8 265,729 - HMPREF1058_RS02175 0.88 -1.1 265,828 + +0.6 265,832 + -0.5 265,832 + -0.7 265,833 - -0.1 265,833 - -0.1 265,861 + -0.6 265,865 + +1.4 265,866 - -0.5 265,877 - -1.1 266,023 + +1.8 266,024 - -0.1 266,030 - +1.5 266,122 + -0.0 266,183 - -4.8 266,200 + -1.1 266,282 + HMPREF1058_RS02170 0.18 -4.3 266,325 + HMPREF1058_RS02170 0.23 -4.0 266,348 + HMPREF1058_RS02170 0.26 -2.4 266,353 - HMPREF1058_RS02170 0.27 -2.9 266,353 - HMPREF1058_RS02170 0.27 -1.7 266,353 - HMPREF1058_RS02170 0.27 -5.7 266,353 - -1.1 266,356 + HMPREF1058_RS02170 0.27 -1.7 266,356 + HMPREF1058_RS02170 0.27 -1.1 266,357 - HMPREF1058_RS02170 0.27 -1.1 266,357 - HMPREF1058_RS02170 0.27 -4.6 266,450 + HMPREF1058_RS02170 0.38 -1.1 266,478 - HMPREF1058_RS02170 0.41 -2.7 266,576 - HMPREF1058_RS02170 0.52 -2.1 266,638 - HMPREF1058_RS02170 0.59 -3.3 266,650 + HMPREF1058_RS02170 0.61 -1.7 266,651 - HMPREF1058_RS02170 0.61 -1.7 266,651 - HMPREF1058_RS02170 0.61 -1.7 266,651 - HMPREF1058_RS02170 0.61 -3.7 266,670 + HMPREF1058_RS02170 0.63 -0.1 266,671 - HMPREF1058_RS02170 0.63 -1.7 266,733 + HMPREF1058_RS02170 0.70 -1.1 266,843 + HMPREF1058_RS02170 0.83 -4.3 266,846 - HMPREF1058_RS02170 0.83 -1.1 267,021 + -1.7 267,027 - +1.4 267,036 - -1.7 267,105 + -0.0 267,150 - -0.8 267,150 - +1.5 267,166 + +0.6 267,184 + +0.6 267,184 + +1.0 267,184 + +2.5 267,184 + -2.0 267,235 + +2.1 267,236 - +1.3 267,238 + -0.3 267,284 + HMPREF1058_RS02165 0.14 -0.1 267,329 - HMPREF1058_RS02165 0.19 -0.4 267,435 - HMPREF1058_RS02165 0.30 +0.9 267,467 + HMPREF1058_RS02165 0.34 +1.1 267,472 + HMPREF1058_RS02165 0.34 -2.7 267,492 - HMPREF1058_RS02165 0.36 -0.1 267,499 + HMPREF1058_RS02165 0.37 -1.2 267,500 - HMPREF1058_RS02165 0.37 -0.1 267,500 - HMPREF1058_RS02165 0.37 +0.6 267,524 + HMPREF1058_RS02165 0.40 -4.2 267,524 + HMPREF1058_RS02165 0.40 -1.9 267,524 + HMPREF1058_RS02165 0.40 +0.4 267,525 - HMPREF1058_RS02165 0.40 +0.2 267,531 + HMPREF1058_RS02165 0.40 -1.5 267,531 + HMPREF1058_RS02165 0.40 -2.3 267,532 - HMPREF1058_RS02165 0.41 -1.9 267,566 + HMPREF1058_RS02165 0.44 +0.5 267,683 + HMPREF1058_RS02165 0.57 +1.9 267,684 - HMPREF1058_RS02165 0.57 -1.0 267,686 + HMPREF1058_RS02165 0.57 +0.7 267,686 + HMPREF1058_RS02165 0.57 +2.8 267,687 - HMPREF1058_RS02165 0.57 +0.4 267,690 - HMPREF1058_RS02165 0.57 +1.9 267,718 - HMPREF1058_RS02165 0.60 +1.1 267,718 - HMPREF1058_RS02165 0.60 +1.5 267,779 + HMPREF1058_RS02165 0.67 -0.1 267,831 + HMPREF1058_RS02165 0.72 -2.4 267,925 - HMPREF1058_RS02165 0.82 -0.1 267,939 - HMPREF1058_RS02165 0.84 +0.9
Or see this region's nucleotide sequence