Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02140

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02150 and HMPREF1058_RS02145 overlap by 8 nucleotidesHMPREF1058_RS02145 and HMPREF1058_RS02140 are separated by 161 nucleotidesHMPREF1058_RS02140 and HMPREF1058_RS02135 are separated by 234 nucleotides HMPREF1058_RS02150: HMPREF1058_RS02150 - DUF3440 domain-containing protein, at 270,509 to 271,810 _RS02150 HMPREF1058_RS02145: HMPREF1058_RS02145 - hypothetical protein, at 271,803 to 272,195 _RS02145 HMPREF1058_RS02140: HMPREF1058_RS02140 - NADP-specific glutamate dehydrogenase, at 272,357 to 273,694 _RS02140 HMPREF1058_RS02135: HMPREF1058_RS02135 - phosphoenolpyruvate synthase, at 273,929 to 276,886 _RS02135 Position (kb) 272 273 274Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 271.399 kb on - strand, within HMPREF1058_RS02150at 271.463 kb on - strand, within HMPREF1058_RS02150at 271.486 kb on - strand, within HMPREF1058_RS02150at 271.498 kb on + strand, within HMPREF1058_RS02150at 271.551 kb on - strand, within HMPREF1058_RS02150at 271.551 kb on - strand, within HMPREF1058_RS02150at 271.585 kb on - strand, within HMPREF1058_RS02150at 271.614 kb on + strand, within HMPREF1058_RS02150at 271.626 kb on + strand, within HMPREF1058_RS02150at 271.627 kb on - strand, within HMPREF1058_RS02150at 271.629 kb on - strand, within HMPREF1058_RS02150at 271.629 kb on - strand, within HMPREF1058_RS02150at 271.666 kb on - strand, within HMPREF1058_RS02150at 271.672 kb on + strand, within HMPREF1058_RS02150at 271.677 kb on - strand, within HMPREF1058_RS02150at 271.723 kb on - strandat 271.726 kb on + strandat 271.793 kb on - strandat 271.886 kb on + strand, within HMPREF1058_RS02145at 271.916 kb on - strand, within HMPREF1058_RS02145at 271.917 kb on + strand, within HMPREF1058_RS02145at 271.984 kb on + strand, within HMPREF1058_RS02145at 271.985 kb on - strand, within HMPREF1058_RS02145at 271.985 kb on - strand, within HMPREF1058_RS02145at 271.988 kb on - strand, within HMPREF1058_RS02145at 271.988 kb on - strand, within HMPREF1058_RS02145at 272.065 kb on + strand, within HMPREF1058_RS02145at 272.157 kb on + strandat 272.179 kb on - strandat 272.200 kb on + strandat 272.237 kb on + strandat 272.253 kb on + strandat 272.306 kb on - strandat 272.306 kb on - strandat 272.319 kb on - strandat 272.347 kb on + strandat 272.347 kb on + strandat 272.390 kb on + strandat 272.428 kb on - strandat 272.435 kb on - strandat 272.435 kb on - strandat 272.457 kb on + strandat 272.489 kb on - strandat 272.489 kb on - strandat 272.498 kb on + strand, within HMPREF1058_RS02140at 272.503 kb on + strand, within HMPREF1058_RS02140at 272.510 kb on + strand, within HMPREF1058_RS02140at 272.569 kb on + strand, within HMPREF1058_RS02140at 272.570 kb on - strand, within HMPREF1058_RS02140at 272.573 kb on + strand, within HMPREF1058_RS02140at 272.607 kb on + strand, within HMPREF1058_RS02140at 272.608 kb on - strand, within HMPREF1058_RS02140at 272.608 kb on - strand, within HMPREF1058_RS02140at 272.660 kb on - strand, within HMPREF1058_RS02140at 272.704 kb on + strand, within HMPREF1058_RS02140at 272.724 kb on - strand, within HMPREF1058_RS02140at 272.756 kb on - strand, within HMPREF1058_RS02140at 272.756 kb on - strand, within HMPREF1058_RS02140at 272.760 kb on - strand, within HMPREF1058_RS02140at 272.760 kb on - strand, within HMPREF1058_RS02140at 272.765 kb on - strand, within HMPREF1058_RS02140at 272.803 kb on + strand, within HMPREF1058_RS02140at 272.828 kb on + strand, within HMPREF1058_RS02140at 272.901 kb on + strand, within HMPREF1058_RS02140at 272.901 kb on + strand, within HMPREF1058_RS02140at 272.902 kb on - strand, within HMPREF1058_RS02140at 272.905 kb on + strand, within HMPREF1058_RS02140at 272.905 kb on + strand, within HMPREF1058_RS02140at 272.959 kb on + strand, within HMPREF1058_RS02140at 273.016 kb on + strand, within HMPREF1058_RS02140at 273.137 kb on - strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.174 kb on + strand, within HMPREF1058_RS02140at 273.175 kb on - strand, within HMPREF1058_RS02140at 273.175 kb on - strand, within HMPREF1058_RS02140at 273.179 kb on + strand, within HMPREF1058_RS02140at 273.337 kb on + strand, within HMPREF1058_RS02140at 273.405 kb on - strand, within HMPREF1058_RS02140at 273.473 kb on + strand, within HMPREF1058_RS02140at 273.529 kb on + strand, within HMPREF1058_RS02140at 273.591 kb on + strandat 273.591 kb on + strandat 273.591 kb on + strandat 273.595 kb on + strandat 273.595 kb on + strandat 273.596 kb on - strandat 273.636 kb on + strandat 273.698 kb on + strandat 273.699 kb on - strandat 273.750 kb on - strandat 273.864 kb on - strandat 273.881 kb on - strandat 273.960 kb on - strandat 274.042 kb on + strandat 274.088 kb on + strandat 274.089 kb on - strandat 274.090 kb on + strandat 274.171 kb on + strandat 274.171 kb on + strandat 274.258 kb on + strand, within HMPREF1058_RS02135at 274.259 kb on - strand, within HMPREF1058_RS02135at 274.337 kb on + strand, within HMPREF1058_RS02135at 274.372 kb on - strand, within HMPREF1058_RS02135at 274.378 kb on + strand, within HMPREF1058_RS02135at 274.379 kb on - strand, within HMPREF1058_RS02135at 274.393 kb on - strand, within HMPREF1058_RS02135at 274.629 kb on - strand, within HMPREF1058_RS02135at 274.634 kb on - strand, within HMPREF1058_RS02135at 274.634 kb on - strand, within HMPREF1058_RS02135at 274.653 kb on + strand, within HMPREF1058_RS02135at 274.654 kb on - strand, within HMPREF1058_RS02135at 274.654 kb on - strand, within HMPREF1058_RS02135

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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271,399 - HMPREF1058_RS02150 0.68 -4.6
271,463 - HMPREF1058_RS02150 0.73 -5.3
271,486 - HMPREF1058_RS02150 0.75 -1.1
271,498 + HMPREF1058_RS02150 0.76 -3.9
271,551 - HMPREF1058_RS02150 0.80 -2.7
271,551 - HMPREF1058_RS02150 0.80 -1.7
271,585 - HMPREF1058_RS02150 0.83 -3.1
271,614 + HMPREF1058_RS02150 0.85 -1.1
271,626 + HMPREF1058_RS02150 0.86 -0.1
271,627 - HMPREF1058_RS02150 0.86 -1.1
271,629 - HMPREF1058_RS02150 0.86 -3.7
271,629 - HMPREF1058_RS02150 0.86 -3.6
271,666 - HMPREF1058_RS02150 0.89 -2.4
271,672 + HMPREF1058_RS02150 0.89 -2.4
271,677 - HMPREF1058_RS02150 0.90 -1.7
271,723 - -3.3
271,726 + -2.7
271,793 - -4.6
271,886 + HMPREF1058_RS02145 0.21 -3.6
271,916 - HMPREF1058_RS02145 0.29 +0.3
271,917 + HMPREF1058_RS02145 0.29 -4.3
271,984 + HMPREF1058_RS02145 0.46 -1.1
271,985 - HMPREF1058_RS02145 0.46 +1.1
271,985 - HMPREF1058_RS02145 0.46 +3.6
271,988 - HMPREF1058_RS02145 0.47 +1.4
271,988 - HMPREF1058_RS02145 0.47 +1.0
272,065 + HMPREF1058_RS02145 0.67 -3.1
272,157 + -3.1
272,179 - +3.4
272,200 + -1.1
272,237 + -2.4
272,253 + -1.7
272,306 - -0.8
272,306 - -0.4
272,319 - +2.3
272,347 + +0.5
272,347 + -1.1
272,390 + -2.7
272,428 - -1.1
272,435 - -2.8
272,435 - -0.1
272,457 + -3.4
272,489 - -4.0
272,489 - -3.4
272,498 + HMPREF1058_RS02140 0.11 -2.4
272,503 + HMPREF1058_RS02140 0.11 -1.1
272,510 + HMPREF1058_RS02140 0.11 -3.6
272,569 + HMPREF1058_RS02140 0.16 -4.2
272,570 - HMPREF1058_RS02140 0.16 -2.9
272,573 + HMPREF1058_RS02140 0.16 -1.1
272,607 + HMPREF1058_RS02140 0.19 -2.4
272,608 - HMPREF1058_RS02140 0.19 -4.0
272,608 - HMPREF1058_RS02140 0.19 -3.4
272,660 - HMPREF1058_RS02140 0.23 -2.7
272,704 + HMPREF1058_RS02140 0.26 -3.4
272,724 - HMPREF1058_RS02140 0.27 -2.3
272,756 - HMPREF1058_RS02140 0.30 -2.1
272,756 - HMPREF1058_RS02140 0.30 -1.1
272,760 - HMPREF1058_RS02140 0.30 -1.1
272,760 - HMPREF1058_RS02140 0.30 -2.8
272,765 - HMPREF1058_RS02140 0.30 -0.1
272,803 + HMPREF1058_RS02140 0.33 -4.4
272,828 + HMPREF1058_RS02140 0.35 -2.8
272,901 + HMPREF1058_RS02140 0.41 -1.7
272,901 + HMPREF1058_RS02140 0.41 -4.3
272,902 - HMPREF1058_RS02140 0.41 -5.8
272,905 + HMPREF1058_RS02140 0.41 -3.8
272,905 + HMPREF1058_RS02140 0.41 -3.4
272,959 + HMPREF1058_RS02140 0.45 -2.4
273,016 + HMPREF1058_RS02140 0.49 -0.1
273,137 - HMPREF1058_RS02140 0.58 -2.9
273,174 + HMPREF1058_RS02140 0.61 -3.3
273,174 + HMPREF1058_RS02140 0.61 -1.1
273,174 + HMPREF1058_RS02140 0.61 -4.0
273,175 - HMPREF1058_RS02140 0.61 -4.5
273,175 - HMPREF1058_RS02140 0.61 -4.1
273,179 + HMPREF1058_RS02140 0.61 -3.8
273,337 + HMPREF1058_RS02140 0.73 -2.1
273,405 - HMPREF1058_RS02140 0.78 -2.7
273,473 + HMPREF1058_RS02140 0.83 -2.6
273,529 + HMPREF1058_RS02140 0.88 -3.1
273,591 + -2.7
273,591 + -1.1
273,591 + -3.7
273,595 + -3.4
273,595 + -4.8
273,596 - -2.9
273,636 + -0.1
273,698 + -2.1
273,699 - -1.7
273,750 - -0.5
273,864 - +0.4
273,881 - +2.0
273,960 - +0.6
274,042 + -1.7
274,088 + -1.7
274,089 - +0.1
274,090 + -3.0
274,171 + -2.1
274,171 + -1.4
274,258 + HMPREF1058_RS02135 0.11 -1.1
274,259 - HMPREF1058_RS02135 0.11 +0.9
274,337 + HMPREF1058_RS02135 0.14 -2.1
274,372 - HMPREF1058_RS02135 0.15 +2.8
274,378 + HMPREF1058_RS02135 0.15 -1.1
274,379 - HMPREF1058_RS02135 0.15 +0.0
274,393 - HMPREF1058_RS02135 0.16 +0.4
274,629 - HMPREF1058_RS02135 0.24 -0.0
274,634 - HMPREF1058_RS02135 0.24 -1.0
274,634 - HMPREF1058_RS02135 0.24 +1.5
274,653 + HMPREF1058_RS02135 0.24 -2.9
274,654 - HMPREF1058_RS02135 0.25 +0.7
274,654 - HMPREF1058_RS02135 0.25 -0.7

Or see this region's nucleotide sequence