Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02125

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS0120030 and HMPREF1058_RS02125 are separated by 139 nucleotidesHMPREF1058_RS02125 and HMPREF1058_RS02120 are separated by 8 nucleotides HMPREF1058_RS0120030: HMPREF1058_RS0120030 - transposase, at 278,385 to 279,689 _RS0120030 HMPREF1058_RS02125: HMPREF1058_RS02125 - PorT family protein, at 279,829 to 280,611 _RS02125 HMPREF1058_RS02120: HMPREF1058_RS02120 - PCMD domain-containing protein, at 280,620 to 281,711 _RS02120 Position (kb) 279 280 281Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 278.831 kb on - strand, within HMPREF1058_RS0120030at 278.832 kb on + strand, within HMPREF1058_RS0120030at 278.833 kb on - strand, within HMPREF1058_RS0120030at 278.945 kb on - strand, within HMPREF1058_RS0120030at 278.991 kb on - strand, within HMPREF1058_RS0120030at 279.153 kb on + strand, within HMPREF1058_RS0120030at 279.154 kb on - strand, within HMPREF1058_RS0120030at 279.154 kb on - strand, within HMPREF1058_RS0120030at 279.227 kb on - strand, within HMPREF1058_RS0120030at 279.243 kb on - strand, within HMPREF1058_RS0120030at 279.324 kb on + strand, within HMPREF1058_RS0120030at 279.349 kb on - strand, within HMPREF1058_RS0120030at 279.411 kb on + strand, within HMPREF1058_RS0120030at 279.411 kb on + strand, within HMPREF1058_RS0120030at 279.411 kb on + strand, within HMPREF1058_RS0120030at 279.411 kb on - strand, within HMPREF1058_RS0120030at 279.477 kb on - strand, within HMPREF1058_RS0120030at 279.477 kb on - strand, within HMPREF1058_RS0120030at 279.484 kb on - strand, within HMPREF1058_RS0120030at 279.555 kb on - strand, within HMPREF1058_RS0120030at 279.683 kb on + strandat 279.757 kb on + strandat 279.772 kb on + strandat 279.773 kb on - strandat 279.773 kb on - strandat 279.773 kb on - strandat 279.774 kb on + strandat 279.775 kb on - strandat 279.775 kb on - strandat 279.798 kb on - strandat 279.824 kb on - strandat 279.830 kb on + strandat 279.851 kb on - strandat 279.874 kb on - strandat 279.874 kb on - strandat 279.883 kb on - strandat 279.885 kb on + strandat 279.888 kb on + strandat 279.888 kb on + strandat 279.889 kb on - strandat 279.928 kb on + strand, within HMPREF1058_RS02125at 279.983 kb on - strand, within HMPREF1058_RS02125at 280.026 kb on + strand, within HMPREF1058_RS02125at 280.027 kb on - strand, within HMPREF1058_RS02125at 280.086 kb on - strand, within HMPREF1058_RS02125at 280.097 kb on - strand, within HMPREF1058_RS02125at 280.137 kb on - strand, within HMPREF1058_RS02125at 280.175 kb on + strand, within HMPREF1058_RS02125at 280.183 kb on + strand, within HMPREF1058_RS02125at 280.197 kb on + strand, within HMPREF1058_RS02125at 280.202 kb on + strand, within HMPREF1058_RS02125at 280.386 kb on - strand, within HMPREF1058_RS02125at 280.419 kb on - strand, within HMPREF1058_RS02125at 280.478 kb on - strand, within HMPREF1058_RS02125at 280.489 kb on + strand, within HMPREF1058_RS02125at 280.490 kb on - strand, within HMPREF1058_RS02125at 280.496 kb on + strand, within HMPREF1058_RS02125at 280.497 kb on - strand, within HMPREF1058_RS02125at 280.511 kb on - strand, within HMPREF1058_RS02125at 280.511 kb on - strand, within HMPREF1058_RS02125at 280.556 kb on - strandat 280.556 kb on - strandat 280.579 kb on + strandat 280.580 kb on - strandat 280.580 kb on - strandat 280.635 kb on - strandat 280.657 kb on - strandat 280.722 kb on - strandat 280.796 kb on - strand, within HMPREF1058_RS02120at 280.845 kb on - strand, within HMPREF1058_RS02120at 280.857 kb on - strand, within HMPREF1058_RS02120at 280.924 kb on + strand, within HMPREF1058_RS02120at 280.991 kb on + strand, within HMPREF1058_RS02120at 280.997 kb on + strand, within HMPREF1058_RS02120at 280.997 kb on + strand, within HMPREF1058_RS02120at 280.997 kb on + strand, within HMPREF1058_RS02120at 280.998 kb on - strand, within HMPREF1058_RS02120at 280.998 kb on - strand, within HMPREF1058_RS02120at 280.998 kb on - strand, within HMPREF1058_RS02120at 281.002 kb on + strand, within HMPREF1058_RS02120at 281.011 kb on - strand, within HMPREF1058_RS02120at 281.011 kb on - strand, within HMPREF1058_RS02120at 281.013 kb on - strand, within HMPREF1058_RS02120at 281.013 kb on - strand, within HMPREF1058_RS02120at 281.015 kb on - strand, within HMPREF1058_RS02120at 281.015 kb on - strand, within HMPREF1058_RS02120at 281.067 kb on - strand, within HMPREF1058_RS02120at 281.079 kb on - strand, within HMPREF1058_RS02120at 281.079 kb on - strand, within HMPREF1058_RS02120at 281.157 kb on + strand, within HMPREF1058_RS02120at 281.211 kb on - strand, within HMPREF1058_RS02120at 281.222 kb on + strand, within HMPREF1058_RS02120at 281.223 kb on - strand, within HMPREF1058_RS02120at 281.236 kb on - strand, within HMPREF1058_RS02120at 281.243 kb on + strand, within HMPREF1058_RS02120at 281.251 kb on + strand, within HMPREF1058_RS02120at 281.297 kb on + strand, within HMPREF1058_RS02120at 281.297 kb on + strand, within HMPREF1058_RS02120at 281.308 kb on + strand, within HMPREF1058_RS02120at 281.311 kb on - strand, within HMPREF1058_RS02120at 281.378 kb on + strand, within HMPREF1058_RS02120at 281.378 kb on + strand, within HMPREF1058_RS02120at 281.379 kb on - strand, within HMPREF1058_RS02120at 281.380 kb on + strand, within HMPREF1058_RS02120at 281.380 kb on + strand, within HMPREF1058_RS02120at 281.381 kb on - strand, within HMPREF1058_RS02120at 281.381 kb on - strand, within HMPREF1058_RS02120at 281.430 kb on - strand, within HMPREF1058_RS02120at 281.431 kb on + strand, within HMPREF1058_RS02120at 281.431 kb on + strand, within HMPREF1058_RS02120at 281.554 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.587 kb on - strand, within HMPREF1058_RS02120

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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278,831 - HMPREF1058_RS0120030 0.34 +0.8
278,832 + HMPREF1058_RS0120030 0.34 +0.9
278,833 - HMPREF1058_RS0120030 0.34 -0.3
278,945 - HMPREF1058_RS0120030 0.43 +1.0
278,991 - HMPREF1058_RS0120030 0.46 -0.1
279,153 + HMPREF1058_RS0120030 0.59 -3.1
279,154 - HMPREF1058_RS0120030 0.59 -0.5
279,154 - HMPREF1058_RS0120030 0.59 -0.6
279,227 - HMPREF1058_RS0120030 0.65 +1.2
279,243 - HMPREF1058_RS0120030 0.66 +0.9
279,324 + HMPREF1058_RS0120030 0.72 +0.9
279,349 - HMPREF1058_RS0120030 0.74 +1.4
279,411 + HMPREF1058_RS0120030 0.79 +0.4
279,411 + HMPREF1058_RS0120030 0.79 +1.2
279,411 + HMPREF1058_RS0120030 0.79 -0.3
279,411 - HMPREF1058_RS0120030 0.79 +2.2
279,477 - HMPREF1058_RS0120030 0.84 -0.1
279,477 - HMPREF1058_RS0120030 0.84 -0.2
279,484 - HMPREF1058_RS0120030 0.84 +1.8
279,555 - HMPREF1058_RS0120030 0.90 +1.8
279,683 + +1.5
279,757 + +2.5
279,772 + +0.0
279,773 - -0.3
279,773 - +2.5
279,773 - +2.9
279,774 + +1.1
279,775 - +1.8
279,775 - -1.8
279,798 - +1.0
279,824 - +0.3
279,830 + +0.3
279,851 - -0.1
279,874 - -1.7
279,874 - -3.2
279,883 - -2.7
279,885 + -4.6
279,888 + -4.8
279,888 + -1.1
279,889 - -1.1
279,928 + HMPREF1058_RS02125 0.13 -2.7
279,983 - HMPREF1058_RS02125 0.20 -4.0
280,026 + HMPREF1058_RS02125 0.25 -3.7
280,027 - HMPREF1058_RS02125 0.25 -3.3
280,086 - HMPREF1058_RS02125 0.33 -0.9
280,097 - HMPREF1058_RS02125 0.34 -3.5
280,137 - HMPREF1058_RS02125 0.39 -1.1
280,175 + HMPREF1058_RS02125 0.44 -1.7
280,183 + HMPREF1058_RS02125 0.45 -1.7
280,197 + HMPREF1058_RS02125 0.47 -1.7
280,202 + HMPREF1058_RS02125 0.48 -1.9
280,386 - HMPREF1058_RS02125 0.71 -4.8
280,419 - HMPREF1058_RS02125 0.75 -0.1
280,478 - HMPREF1058_RS02125 0.83 -1.7
280,489 + HMPREF1058_RS02125 0.84 -2.1
280,490 - HMPREF1058_RS02125 0.84 -2.7
280,496 + HMPREF1058_RS02125 0.85 -3.3
280,497 - HMPREF1058_RS02125 0.85 -4.0
280,511 - HMPREF1058_RS02125 0.87 -1.9
280,511 - HMPREF1058_RS02125 0.87 -2.1
280,556 - -2.4
280,556 - -2.7
280,579 + -1.7
280,580 - -1.3
280,580 - -1.4
280,635 - +0.5
280,657 - -1.7
280,722 - -2.8
280,796 - HMPREF1058_RS02120 0.16 -1.0
280,845 - HMPREF1058_RS02120 0.21 -2.1
280,857 - HMPREF1058_RS02120 0.22 -1.7
280,924 + HMPREF1058_RS02120 0.28 -1.4
280,991 + HMPREF1058_RS02120 0.34 -2.4
280,997 + HMPREF1058_RS02120 0.35 -2.6
280,997 + HMPREF1058_RS02120 0.35 +0.3
280,997 + HMPREF1058_RS02120 0.35 -3.2
280,998 - HMPREF1058_RS02120 0.35 -4.2
280,998 - HMPREF1058_RS02120 0.35 -2.9
280,998 - HMPREF1058_RS02120 0.35 -1.4
281,002 + HMPREF1058_RS02120 0.35 -2.5
281,011 - HMPREF1058_RS02120 0.36 -1.7
281,011 - HMPREF1058_RS02120 0.36 -3.4
281,013 - HMPREF1058_RS02120 0.36 -2.4
281,013 - HMPREF1058_RS02120 0.36 -3.8
281,015 - HMPREF1058_RS02120 0.36 -1.8
281,015 - HMPREF1058_RS02120 0.36 -0.1
281,067 - HMPREF1058_RS02120 0.41 -1.1
281,079 - HMPREF1058_RS02120 0.42 -1.1
281,079 - HMPREF1058_RS02120 0.42 -4.5
281,157 + HMPREF1058_RS02120 0.49 -2.7
281,211 - HMPREF1058_RS02120 0.54 -2.6
281,222 + HMPREF1058_RS02120 0.55 -3.1
281,223 - HMPREF1058_RS02120 0.55 -4.3
281,236 - HMPREF1058_RS02120 0.56 -1.7
281,243 + HMPREF1058_RS02120 0.57 -4.3
281,251 + HMPREF1058_RS02120 0.58 -2.9
281,297 + HMPREF1058_RS02120 0.62 -3.9
281,297 + HMPREF1058_RS02120 0.62 -1.1
281,308 + HMPREF1058_RS02120 0.63 -2.1
281,311 - HMPREF1058_RS02120 0.63 -2.0
281,378 + HMPREF1058_RS02120 0.69 -3.3
281,378 + HMPREF1058_RS02120 0.69 -1.4
281,379 - HMPREF1058_RS02120 0.70 -3.1
281,380 + HMPREF1058_RS02120 0.70 -2.4
281,380 + HMPREF1058_RS02120 0.70 -4.6
281,381 - HMPREF1058_RS02120 0.70 -2.7
281,381 - HMPREF1058_RS02120 0.70 -2.7
281,430 - HMPREF1058_RS02120 0.74 -0.1
281,431 + HMPREF1058_RS02120 0.74 -0.3
281,431 + HMPREF1058_RS02120 0.74 -3.2
281,554 - HMPREF1058_RS02120 0.86 -0.1
281,574 - HMPREF1058_RS02120 0.87 -1.1
281,574 - HMPREF1058_RS02120 0.87 -2.2
281,574 - HMPREF1058_RS02120 0.87 -1.1
281,587 - HMPREF1058_RS02120 0.89 -1.9

Or see this region's nucleotide sequence