Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0120030 and HMPREF1058_RS02125 are separated by 139 nucleotides HMPREF1058_RS02125 and HMPREF1058_RS02120 are separated by 8 nucleotides HMPREF1058_RS02120 and HMPREF1058_RS02115 are separated by 301 nucleotides
HMPREF1058_RS0120030: HMPREF1058_RS0120030 - transposase, at 278,385 to 279,689
_RS0120030
HMPREF1058_RS02125: HMPREF1058_RS02125 - PorT family protein, at 279,829 to 280,611
_RS02125
HMPREF1058_RS02120: HMPREF1058_RS02120 - PCMD domain-containing protein, at 280,620 to 281,711
_RS02120
HMPREF1058_RS02115: HMPREF1058_RS02115 - NADP-specific glutamate dehydrogenase, at 282,013 to 283,347
_RS02115
Position (kb) 280
281
282 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 279.683 kb on + strand at 279.757 kb on + strand at 279.772 kb on + strand at 279.773 kb on - strand at 279.773 kb on - strand at 279.773 kb on - strand at 279.774 kb on + strand at 279.775 kb on - strand at 279.775 kb on - strand at 279.798 kb on - strand at 279.824 kb on - strand at 279.830 kb on + strand at 279.851 kb on - strand at 279.874 kb on - strand at 279.874 kb on - strand at 279.883 kb on - strand at 279.885 kb on + strand at 279.888 kb on + strand at 279.888 kb on + strand at 279.889 kb on - strand at 279.928 kb on + strand, within HMPREF1058_RS02125 at 279.983 kb on - strand, within HMPREF1058_RS02125 at 280.026 kb on + strand, within HMPREF1058_RS02125 at 280.027 kb on - strand, within HMPREF1058_RS02125 at 280.086 kb on - strand, within HMPREF1058_RS02125 at 280.097 kb on - strand, within HMPREF1058_RS02125 at 280.137 kb on - strand, within HMPREF1058_RS02125 at 280.175 kb on + strand, within HMPREF1058_RS02125 at 280.183 kb on + strand, within HMPREF1058_RS02125 at 280.197 kb on + strand, within HMPREF1058_RS02125 at 280.202 kb on + strand, within HMPREF1058_RS02125 at 280.386 kb on - strand, within HMPREF1058_RS02125 at 280.419 kb on - strand, within HMPREF1058_RS02125 at 280.478 kb on - strand, within HMPREF1058_RS02125 at 280.489 kb on + strand, within HMPREF1058_RS02125 at 280.490 kb on - strand, within HMPREF1058_RS02125 at 280.496 kb on + strand, within HMPREF1058_RS02125 at 280.497 kb on - strand, within HMPREF1058_RS02125 at 280.511 kb on - strand, within HMPREF1058_RS02125 at 280.511 kb on - strand, within HMPREF1058_RS02125 at 280.556 kb on - strand at 280.556 kb on - strand at 280.579 kb on + strand at 280.580 kb on - strand at 280.580 kb on - strand at 280.635 kb on - strand at 280.657 kb on - strand at 280.722 kb on - strand at 280.796 kb on - strand, within HMPREF1058_RS02120 at 280.845 kb on - strand, within HMPREF1058_RS02120 at 280.857 kb on - strand, within HMPREF1058_RS02120 at 280.924 kb on + strand, within HMPREF1058_RS02120 at 280.991 kb on + strand, within HMPREF1058_RS02120 at 280.997 kb on + strand, within HMPREF1058_RS02120 at 280.997 kb on + strand, within HMPREF1058_RS02120 at 280.997 kb on + strand, within HMPREF1058_RS02120 at 280.998 kb on - strand, within HMPREF1058_RS02120 at 280.998 kb on - strand, within HMPREF1058_RS02120 at 280.998 kb on - strand, within HMPREF1058_RS02120 at 281.002 kb on + strand, within HMPREF1058_RS02120 at 281.011 kb on - strand, within HMPREF1058_RS02120 at 281.011 kb on - strand, within HMPREF1058_RS02120 at 281.013 kb on - strand, within HMPREF1058_RS02120 at 281.013 kb on - strand, within HMPREF1058_RS02120 at 281.015 kb on - strand, within HMPREF1058_RS02120 at 281.015 kb on - strand, within HMPREF1058_RS02120 at 281.067 kb on - strand, within HMPREF1058_RS02120 at 281.079 kb on - strand, within HMPREF1058_RS02120 at 281.079 kb on - strand, within HMPREF1058_RS02120 at 281.157 kb on + strand, within HMPREF1058_RS02120 at 281.211 kb on - strand, within HMPREF1058_RS02120 at 281.222 kb on + strand, within HMPREF1058_RS02120 at 281.223 kb on - strand, within HMPREF1058_RS02120 at 281.236 kb on - strand, within HMPREF1058_RS02120 at 281.243 kb on + strand, within HMPREF1058_RS02120 at 281.251 kb on + strand, within HMPREF1058_RS02120 at 281.297 kb on + strand, within HMPREF1058_RS02120 at 281.297 kb on + strand, within HMPREF1058_RS02120 at 281.308 kb on + strand, within HMPREF1058_RS02120 at 281.311 kb on - strand, within HMPREF1058_RS02120 at 281.378 kb on + strand, within HMPREF1058_RS02120 at 281.378 kb on + strand, within HMPREF1058_RS02120 at 281.379 kb on - strand, within HMPREF1058_RS02120 at 281.380 kb on + strand, within HMPREF1058_RS02120 at 281.380 kb on + strand, within HMPREF1058_RS02120 at 281.381 kb on - strand, within HMPREF1058_RS02120 at 281.381 kb on - strand, within HMPREF1058_RS02120 at 281.430 kb on - strand, within HMPREF1058_RS02120 at 281.431 kb on + strand, within HMPREF1058_RS02120 at 281.431 kb on + strand, within HMPREF1058_RS02120 at 281.554 kb on - strand, within HMPREF1058_RS02120 at 281.574 kb on - strand, within HMPREF1058_RS02120 at 281.574 kb on - strand, within HMPREF1058_RS02120 at 281.574 kb on - strand, within HMPREF1058_RS02120 at 281.587 kb on - strand, within HMPREF1058_RS02120 at 281.634 kb on - strand at 281.634 kb on - strand at 281.670 kb on + strand at 281.679 kb on + strand at 281.684 kb on + strand at 281.694 kb on + strand at 281.695 kb on - strand at 281.742 kb on + strand at 281.753 kb on + strand at 281.861 kb on - strand at 281.940 kb on + strand at 281.988 kb on + strand at 281.991 kb on - strand at 281.991 kb on - strand at 281.991 kb on - strand at 281.991 kb on - strand at 281.993 kb on + strand at 282.012 kb on - strand at 282.036 kb on + strand at 282.064 kb on + strand at 282.065 kb on - strand at 282.083 kb on + strand at 282.088 kb on + strand at 282.088 kb on + strand at 282.088 kb on + strand at 282.119 kb on - strand at 282.148 kb on - strand, within HMPREF1058_RS02115 at 282.230 kb on - strand, within HMPREF1058_RS02115 at 282.337 kb on + strand, within HMPREF1058_RS02115 at 282.338 kb on - strand, within HMPREF1058_RS02115 at 282.446 kb on - strand, within HMPREF1058_RS02115 at 282.449 kb on + strand, within HMPREF1058_RS02115 at 282.449 kb on + strand, within HMPREF1058_RS02115 at 282.554 kb on + strand, within HMPREF1058_RS02115 at 282.554 kb on + strand, within HMPREF1058_RS02115 at 282.555 kb on - strand, within HMPREF1058_RS02115 at 282.560 kb on + strand, within HMPREF1058_RS02115 at 282.561 kb on - strand, within HMPREF1058_RS02115 at 282.583 kb on - strand, within HMPREF1058_RS02115 at 282.587 kb on - strand, within HMPREF1058_RS02115 at 282.591 kb on + strand, within HMPREF1058_RS02115 at 282.632 kb on - strand, within HMPREF1058_RS02115 at 282.710 kb on + strand, within HMPREF1058_RS02115 at 282.710 kb on + strand, within HMPREF1058_RS02115 at 282.711 kb on - strand, within HMPREF1058_RS02115
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 279,683 + +1.5 279,757 + +2.5 279,772 + +0.0 279,773 - -0.3 279,773 - +2.5 279,773 - +2.9 279,774 + +1.1 279,775 - +1.8 279,775 - -1.8 279,798 - +1.0 279,824 - +0.3 279,830 + +0.3 279,851 - -0.1 279,874 - -1.7 279,874 - -3.2 279,883 - -2.7 279,885 + -4.6 279,888 + -4.8 279,888 + -1.1 279,889 - -1.1 279,928 + HMPREF1058_RS02125 0.13 -2.7 279,983 - HMPREF1058_RS02125 0.20 -4.0 280,026 + HMPREF1058_RS02125 0.25 -3.7 280,027 - HMPREF1058_RS02125 0.25 -3.3 280,086 - HMPREF1058_RS02125 0.33 -0.9 280,097 - HMPREF1058_RS02125 0.34 -3.5 280,137 - HMPREF1058_RS02125 0.39 -1.1 280,175 + HMPREF1058_RS02125 0.44 -1.7 280,183 + HMPREF1058_RS02125 0.45 -1.7 280,197 + HMPREF1058_RS02125 0.47 -1.7 280,202 + HMPREF1058_RS02125 0.48 -1.9 280,386 - HMPREF1058_RS02125 0.71 -4.8 280,419 - HMPREF1058_RS02125 0.75 -0.1 280,478 - HMPREF1058_RS02125 0.83 -1.7 280,489 + HMPREF1058_RS02125 0.84 -2.1 280,490 - HMPREF1058_RS02125 0.84 -2.7 280,496 + HMPREF1058_RS02125 0.85 -3.3 280,497 - HMPREF1058_RS02125 0.85 -4.0 280,511 - HMPREF1058_RS02125 0.87 -1.9 280,511 - HMPREF1058_RS02125 0.87 -2.1 280,556 - -2.4 280,556 - -2.7 280,579 + -1.7 280,580 - -1.3 280,580 - -1.4 280,635 - +0.5 280,657 - -1.7 280,722 - -2.8 280,796 - HMPREF1058_RS02120 0.16 -1.0 280,845 - HMPREF1058_RS02120 0.21 -2.1 280,857 - HMPREF1058_RS02120 0.22 -1.7 280,924 + HMPREF1058_RS02120 0.28 -1.4 280,991 + HMPREF1058_RS02120 0.34 -2.4 280,997 + HMPREF1058_RS02120 0.35 -2.6 280,997 + HMPREF1058_RS02120 0.35 +0.3 280,997 + HMPREF1058_RS02120 0.35 -3.2 280,998 - HMPREF1058_RS02120 0.35 -4.2 280,998 - HMPREF1058_RS02120 0.35 -2.9 280,998 - HMPREF1058_RS02120 0.35 -1.4 281,002 + HMPREF1058_RS02120 0.35 -2.5 281,011 - HMPREF1058_RS02120 0.36 -1.7 281,011 - HMPREF1058_RS02120 0.36 -3.4 281,013 - HMPREF1058_RS02120 0.36 -2.4 281,013 - HMPREF1058_RS02120 0.36 -3.8 281,015 - HMPREF1058_RS02120 0.36 -1.8 281,015 - HMPREF1058_RS02120 0.36 -0.1 281,067 - HMPREF1058_RS02120 0.41 -1.1 281,079 - HMPREF1058_RS02120 0.42 -1.1 281,079 - HMPREF1058_RS02120 0.42 -4.5 281,157 + HMPREF1058_RS02120 0.49 -2.7 281,211 - HMPREF1058_RS02120 0.54 -2.6 281,222 + HMPREF1058_RS02120 0.55 -3.1 281,223 - HMPREF1058_RS02120 0.55 -4.3 281,236 - HMPREF1058_RS02120 0.56 -1.7 281,243 + HMPREF1058_RS02120 0.57 -4.3 281,251 + HMPREF1058_RS02120 0.58 -2.9 281,297 + HMPREF1058_RS02120 0.62 -3.9 281,297 + HMPREF1058_RS02120 0.62 -1.1 281,308 + HMPREF1058_RS02120 0.63 -2.1 281,311 - HMPREF1058_RS02120 0.63 -2.0 281,378 + HMPREF1058_RS02120 0.69 -3.3 281,378 + HMPREF1058_RS02120 0.69 -1.4 281,379 - HMPREF1058_RS02120 0.70 -3.1 281,380 + HMPREF1058_RS02120 0.70 -2.4 281,380 + HMPREF1058_RS02120 0.70 -4.6 281,381 - HMPREF1058_RS02120 0.70 -2.7 281,381 - HMPREF1058_RS02120 0.70 -2.7 281,430 - HMPREF1058_RS02120 0.74 -0.1 281,431 + HMPREF1058_RS02120 0.74 -0.3 281,431 + HMPREF1058_RS02120 0.74 -3.2 281,554 - HMPREF1058_RS02120 0.86 -0.1 281,574 - HMPREF1058_RS02120 0.87 -1.1 281,574 - HMPREF1058_RS02120 0.87 -2.2 281,574 - HMPREF1058_RS02120 0.87 -1.1 281,587 - HMPREF1058_RS02120 0.89 -1.9 281,634 - -3.7 281,634 - -0.5 281,670 + -2.9 281,679 + -5.3 281,684 + +0.0 281,694 + -2.9 281,695 - -1.1 281,742 + -3.8 281,753 + -2.0 281,861 - +0.4 281,940 + +2.2 281,988 + -0.1 281,991 - +1.5 281,991 - +0.9 281,991 - +0.6 281,991 - -0.1 281,993 + -1.7 282,012 - +1.1 282,036 + +0.2 282,064 + -0.6 282,065 - +0.4 282,083 + -1.7 282,088 + +2.2 282,088 + -1.7 282,088 + +1.7 282,119 - +1.5 282,148 - HMPREF1058_RS02115 0.10 +0.1 282,230 - HMPREF1058_RS02115 0.16 +0.5 282,337 + HMPREF1058_RS02115 0.24 -0.1 282,338 - HMPREF1058_RS02115 0.24 +0.8 282,446 - HMPREF1058_RS02115 0.32 -1.5 282,449 + HMPREF1058_RS02115 0.33 +0.8 282,449 + HMPREF1058_RS02115 0.33 +3.5 282,554 + HMPREF1058_RS02115 0.41 -1.7 282,554 + HMPREF1058_RS02115 0.41 -0.1 282,555 - HMPREF1058_RS02115 0.41 +1.8 282,560 + HMPREF1058_RS02115 0.41 +0.9 282,561 - HMPREF1058_RS02115 0.41 +0.4 282,583 - HMPREF1058_RS02115 0.43 -2.7 282,587 - HMPREF1058_RS02115 0.43 +0.9 282,591 + HMPREF1058_RS02115 0.43 -0.6 282,632 - HMPREF1058_RS02115 0.46 -1.3 282,710 + HMPREF1058_RS02115 0.52 -1.3 282,710 + HMPREF1058_RS02115 0.52 -0.4 282,711 - HMPREF1058_RS02115 0.52 +0.4
Or see this region's nucleotide sequence