Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02100

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02105 and HMPREF1058_RS02100 are separated by 53 nucleotidesHMPREF1058_RS02100 and HMPREF1058_RS02095 are separated by 11 nucleotides HMPREF1058_RS02105: HMPREF1058_RS02105 - efflux RND transporter periplasmic adaptor subunit, at 286,551 to 287,762 _RS02105 HMPREF1058_RS02100: HMPREF1058_RS02100 - efflux RND transporter permease subunit, at 287,816 to 291,034 _RS02100 HMPREF1058_RS02095: HMPREF1058_RS02095 - efflux transporter outer membrane subunit, at 291,046 to 292,431 _RS02095 Position (kb) 287 288 289 290 291 292Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 286.894 kb on + strand, within HMPREF1058_RS02105at 286.895 kb on - strand, within HMPREF1058_RS02105at 286.956 kb on + strandat 287.130 kb on - strand, within HMPREF1058_RS02105at 287.135 kb on + strand, within HMPREF1058_RS02105at 287.196 kb on + strand, within HMPREF1058_RS02105at 287.196 kb on + strand, within HMPREF1058_RS02105at 287.202 kb on + strand, within HMPREF1058_RS02105at 287.202 kb on + strand, within HMPREF1058_RS02105at 287.203 kb on - strand, within HMPREF1058_RS02105at 287.211 kb on - strand, within HMPREF1058_RS02105at 287.309 kb on + strand, within HMPREF1058_RS02105at 287.309 kb on + strand, within HMPREF1058_RS02105at 287.316 kb on + strand, within HMPREF1058_RS02105at 287.317 kb on - strand, within HMPREF1058_RS02105at 287.318 kb on + strand, within HMPREF1058_RS02105at 287.330 kb on + strand, within HMPREF1058_RS02105at 287.331 kb on - strand, within HMPREF1058_RS02105at 287.344 kb on + strand, within HMPREF1058_RS02105at 287.344 kb on + strand, within HMPREF1058_RS02105at 287.354 kb on + strand, within HMPREF1058_RS02105at 287.381 kb on + strand, within HMPREF1058_RS02105at 287.413 kb on + strand, within HMPREF1058_RS02105at 287.436 kb on - strand, within HMPREF1058_RS02105at 287.436 kb on - strand, within HMPREF1058_RS02105at 287.441 kb on - strand, within HMPREF1058_RS02105at 287.454 kb on - strand, within HMPREF1058_RS02105at 287.456 kb on + strand, within HMPREF1058_RS02105at 287.520 kb on + strand, within HMPREF1058_RS02105at 287.520 kb on + strand, within HMPREF1058_RS02105at 287.540 kb on + strand, within HMPREF1058_RS02105at 287.541 kb on - strand, within HMPREF1058_RS02105at 287.593 kb on - strand, within HMPREF1058_RS02105at 287.593 kb on - strand, within HMPREF1058_RS02105at 287.595 kb on - strand, within HMPREF1058_RS02105at 287.595 kb on - strand, within HMPREF1058_RS02105at 287.595 kb on - strand, within HMPREF1058_RS02105at 287.600 kb on + strand, within HMPREF1058_RS02105at 287.644 kb on + strandat 287.756 kb on + strandat 287.767 kb on + strandat 287.783 kb on + strandat 287.798 kb on - strandat 287.802 kb on - strandat 287.806 kb on + strandat 287.809 kb on - strandat 287.810 kb on + strandat 287.810 kb on + strandat 287.823 kb on + strandat 287.874 kb on + strandat 287.902 kb on + strandat 287.902 kb on + strandat 288.047 kb on + strandat 288.048 kb on - strandat 288.048 kb on - strandat 288.048 kb on - strandat 288.048 kb on - strandat 288.048 kb on - strandat 288.287 kb on + strand, within HMPREF1058_RS02100at 288.287 kb on + strand, within HMPREF1058_RS02100at 288.288 kb on - strand, within HMPREF1058_RS02100at 288.292 kb on + strand, within HMPREF1058_RS02100at 288.292 kb on + strand, within HMPREF1058_RS02100at 288.295 kb on + strand, within HMPREF1058_RS02100at 288.295 kb on + strand, within HMPREF1058_RS02100at 288.299 kb on - strand, within HMPREF1058_RS02100at 288.325 kb on - strand, within HMPREF1058_RS02100at 288.343 kb on + strand, within HMPREF1058_RS02100at 288.363 kb on - strand, within HMPREF1058_RS02100at 288.363 kb on - strand, within HMPREF1058_RS02100at 288.374 kb on - strand, within HMPREF1058_RS02100at 288.554 kb on - strand, within HMPREF1058_RS02100at 288.612 kb on + strand, within HMPREF1058_RS02100at 288.618 kb on + strand, within HMPREF1058_RS02100at 288.619 kb on - strandat 288.646 kb on + strand, within HMPREF1058_RS02100at 288.651 kb on + strand, within HMPREF1058_RS02100at 288.652 kb on - strand, within HMPREF1058_RS02100at 288.677 kb on - strand, within HMPREF1058_RS02100at 288.828 kb on + strand, within HMPREF1058_RS02100at 288.874 kb on - strand, within HMPREF1058_RS02100at 288.876 kb on - strand, within HMPREF1058_RS02100at 288.876 kb on - strand, within HMPREF1058_RS02100at 288.877 kb on + strand, within HMPREF1058_RS02100at 288.877 kb on + strand, within HMPREF1058_RS02100at 288.877 kb on + strand, within HMPREF1058_RS02100at 288.878 kb on - strand, within HMPREF1058_RS02100at 288.878 kb on - strandat 289.385 kb on - strand, within HMPREF1058_RS02100at 289.398 kb on - strand, within HMPREF1058_RS02100at 289.410 kb on + strand, within HMPREF1058_RS02100at 289.410 kb on + strand, within HMPREF1058_RS02100at 289.410 kb on + strand, within HMPREF1058_RS02100at 289.411 kb on - strand, within HMPREF1058_RS02100at 289.411 kb on - strand, within HMPREF1058_RS02100at 289.413 kb on + strand, within HMPREF1058_RS02100at 289.476 kb on + strand, within HMPREF1058_RS02100at 289.476 kb on + strand, within HMPREF1058_RS02100at 289.561 kb on + strand, within HMPREF1058_RS02100at 289.693 kb on + strand, within HMPREF1058_RS02100at 289.694 kb on - strand, within HMPREF1058_RS02100at 289.699 kb on + strand, within HMPREF1058_RS02100at 289.759 kb on + strand, within HMPREF1058_RS02100at 289.759 kb on + strand, within HMPREF1058_RS02100at 289.760 kb on - strand, within HMPREF1058_RS02100at 289.865 kb on - strand, within HMPREF1058_RS02100at 289.902 kb on - strand, within HMPREF1058_RS02100at 289.902 kb on - strandat 289.902 kb on - strand, within HMPREF1058_RS02100at 289.909 kb on - strand, within HMPREF1058_RS02100at 289.919 kb on + strand, within HMPREF1058_RS02100at 289.920 kb on - strand, within HMPREF1058_RS02100at 289.921 kb on + strand, within HMPREF1058_RS02100at 289.921 kb on + strand, within HMPREF1058_RS02100at 289.967 kb on - strand, within HMPREF1058_RS02100at 289.991 kb on + strand, within HMPREF1058_RS02100at 289.993 kb on + strand, within HMPREF1058_RS02100at 289.993 kb on + strand, within HMPREF1058_RS02100at 289.994 kb on - strand, within HMPREF1058_RS02100at 289.994 kb on - strandat 289.994 kb on - strand, within HMPREF1058_RS02100at 289.994 kb on - strand, within HMPREF1058_RS02100at 289.994 kb on - strand, within HMPREF1058_RS02100at 290.042 kb on - strand, within HMPREF1058_RS02100at 290.048 kb on - strand, within HMPREF1058_RS02100at 290.069 kb on + strand, within HMPREF1058_RS02100at 290.084 kb on + strand, within HMPREF1058_RS02100at 290.173 kb on + strand, within HMPREF1058_RS02100at 290.174 kb on - strand, within HMPREF1058_RS02100at 290.176 kb on + strand, within HMPREF1058_RS02100at 290.185 kb on - strand, within HMPREF1058_RS02100at 290.185 kb on - strand, within HMPREF1058_RS02100at 290.210 kb on - strand, within HMPREF1058_RS02100at 290.239 kb on - strand, within HMPREF1058_RS02100at 290.275 kb on + strand, within HMPREF1058_RS02100at 290.275 kb on + strand, within HMPREF1058_RS02100at 290.276 kb on - strand, within HMPREF1058_RS02100at 290.314 kb on + strand, within HMPREF1058_RS02100at 290.416 kb on + strand, within HMPREF1058_RS02100at 290.417 kb on - strand, within HMPREF1058_RS02100at 290.417 kb on - strand, within HMPREF1058_RS02100at 290.489 kb on + strand, within HMPREF1058_RS02100at 290.498 kb on + strand, within HMPREF1058_RS02100at 290.549 kb on - strand, within HMPREF1058_RS02100at 290.630 kb on - strand, within HMPREF1058_RS02100at 290.635 kb on + strand, within HMPREF1058_RS02100at 290.636 kb on - strand, within HMPREF1058_RS02100at 290.695 kb on - strand, within HMPREF1058_RS02100at 290.857 kb on + strandat 290.884 kb on + strandat 290.885 kb on - strandat 290.896 kb on + strandat 290.949 kb on + strandat 290.993 kb on - strandat 291.020 kb on + strandat 291.021 kb on - strandat 291.021 kb on - strandat 291.028 kb on + strandat 291.028 kb on + strandat 291.029 kb on - strandat 291.083 kb on + strandat 291.103 kb on + strandat 291.103 kb on + strandat 291.104 kb on - strandat 291.106 kb on - strandat 291.174 kb on + strandat 291.192 kb on + strand, within HMPREF1058_RS02095at 291.192 kb on + strand, within HMPREF1058_RS02095at 291.281 kb on + strand, within HMPREF1058_RS02095at 291.281 kb on + strand, within HMPREF1058_RS02095at 291.282 kb on - strand, within HMPREF1058_RS02095at 291.282 kb on - strand, within HMPREF1058_RS02095at 291.415 kb on - strand, within HMPREF1058_RS02095at 291.422 kb on - strand, within HMPREF1058_RS02095at 291.423 kb on + strand, within HMPREF1058_RS02095at 291.423 kb on + strand, within HMPREF1058_RS02095at 291.424 kb on - strand, within HMPREF1058_RS02095at 291.424 kb on - strand, within HMPREF1058_RS02095at 291.428 kb on + strand, within HMPREF1058_RS02095at 291.514 kb on - strand, within HMPREF1058_RS02095at 291.568 kb on + strand, within HMPREF1058_RS02095at 291.569 kb on - strand, within HMPREF1058_RS02095at 291.703 kb on - strand, within HMPREF1058_RS02095at 291.809 kb on + strand, within HMPREF1058_RS02095at 291.810 kb on - strand, within HMPREF1058_RS02095at 291.932 kb on - strand, within HMPREF1058_RS02095at 291.932 kb on - strand, within HMPREF1058_RS02095at 291.932 kb on - strand, within HMPREF1058_RS02095at 291.933 kb on + strand, within HMPREF1058_RS02095at 291.934 kb on - strand, within HMPREF1058_RS02095at 291.985 kb on - strand, within HMPREF1058_RS02095at 291.999 kb on + strand, within HMPREF1058_RS02095

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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286,894 + HMPREF1058_RS02105 0.28 -2.1
286,895 - HMPREF1058_RS02105 0.28 -0.1
286,956 + -0.1
287,130 - HMPREF1058_RS02105 0.48 -5.2
287,135 + HMPREF1058_RS02105 0.48 -1.1
287,196 + HMPREF1058_RS02105 0.53 -1.1
287,196 + HMPREF1058_RS02105 0.53 -0.1
287,202 + HMPREF1058_RS02105 0.54 -2.8
287,202 + HMPREF1058_RS02105 0.54 -1.6
287,203 - HMPREF1058_RS02105 0.54 -4.6
287,211 - HMPREF1058_RS02105 0.54 -3.7
287,309 + HMPREF1058_RS02105 0.63 -2.4
287,309 + HMPREF1058_RS02105 0.63 +0.6
287,316 + HMPREF1058_RS02105 0.63 -1.7
287,317 - HMPREF1058_RS02105 0.63 -2.7
287,318 + HMPREF1058_RS02105 0.63 -1.9
287,330 + HMPREF1058_RS02105 0.64 -0.1
287,331 - HMPREF1058_RS02105 0.64 -3.1
287,344 + HMPREF1058_RS02105 0.65 +1.9
287,344 + HMPREF1058_RS02105 0.65 -2.1
287,354 + HMPREF1058_RS02105 0.66 -4.1
287,381 + HMPREF1058_RS02105 0.68 -2.8
287,413 + HMPREF1058_RS02105 0.71 -1.4
287,436 - HMPREF1058_RS02105 0.73 -2.4
287,436 - HMPREF1058_RS02105 0.73 -3.5
287,441 - HMPREF1058_RS02105 0.73 -0.1
287,454 - HMPREF1058_RS02105 0.75 -1.7
287,456 + HMPREF1058_RS02105 0.75 +2.2
287,520 + HMPREF1058_RS02105 0.80 -0.8
287,520 + HMPREF1058_RS02105 0.80 -2.1
287,540 + HMPREF1058_RS02105 0.82 +1.5
287,541 - HMPREF1058_RS02105 0.82 -1.1
287,593 - HMPREF1058_RS02105 0.86 -0.1
287,593 - HMPREF1058_RS02105 0.86 -3.4
287,595 - HMPREF1058_RS02105 0.86 -3.4
287,595 - HMPREF1058_RS02105 0.86 -2.9
287,595 - HMPREF1058_RS02105 0.86 -3.3
287,600 + HMPREF1058_RS02105 0.87 -1.9
287,644 + -0.1
287,756 + +0.8
287,767 + -0.1
287,783 + -0.1
287,798 - -1.7
287,802 - -3.8
287,806 + -1.2
287,809 - -3.3
287,810 + -2.9
287,810 + -3.4
287,823 + -3.3
287,874 + -3.6
287,902 + -1.7
287,902 + -4.1
288,047 + -1.1
288,048 - -1.7
288,048 - -4.5
288,048 - -2.1
288,048 - -1.1
288,048 - -3.1
288,287 + HMPREF1058_RS02100 0.15 -1.4
288,287 + HMPREF1058_RS02100 0.15 -1.1
288,288 - HMPREF1058_RS02100 0.15 -3.1
288,292 + HMPREF1058_RS02100 0.15 -1.1
288,292 + HMPREF1058_RS02100 0.15 -1.7
288,295 + HMPREF1058_RS02100 0.15 -2.4
288,295 + HMPREF1058_RS02100 0.15 -1.1
288,299 - HMPREF1058_RS02100 0.15 -1.1
288,325 - HMPREF1058_RS02100 0.16 -4.7
288,343 + HMPREF1058_RS02100 0.16 -2.7
288,363 - HMPREF1058_RS02100 0.17 -1.7
288,363 - HMPREF1058_RS02100 0.17 -0.1
288,374 - HMPREF1058_RS02100 0.17 -2.1
288,554 - HMPREF1058_RS02100 0.23 -1.1
288,612 + HMPREF1058_RS02100 0.25 -2.0
288,618 + HMPREF1058_RS02100 0.25 -4.0
288,619 - -1.1
288,646 + HMPREF1058_RS02100 0.26 -2.1
288,651 + HMPREF1058_RS02100 0.26 -2.7
288,652 - HMPREF1058_RS02100 0.26 -0.1
288,677 - HMPREF1058_RS02100 0.27 -1.1
288,828 + HMPREF1058_RS02100 0.31 -1.7
288,874 - HMPREF1058_RS02100 0.33 -4.1
288,876 - HMPREF1058_RS02100 0.33 -2.9
288,876 - HMPREF1058_RS02100 0.33 -1.7
288,877 + HMPREF1058_RS02100 0.33 -2.4
288,877 + HMPREF1058_RS02100 0.33 -1.1
288,877 + HMPREF1058_RS02100 0.33 -2.4
288,878 - HMPREF1058_RS02100 0.33 -3.3
288,878 - -0.1
289,385 - HMPREF1058_RS02100 0.49 -3.3
289,398 - HMPREF1058_RS02100 0.49 -3.6
289,410 + HMPREF1058_RS02100 0.50 -2.6
289,410 + HMPREF1058_RS02100 0.50 -3.1
289,410 + HMPREF1058_RS02100 0.50 -2.7
289,411 - HMPREF1058_RS02100 0.50 -1.1
289,411 - HMPREF1058_RS02100 0.50 -1.7
289,413 + HMPREF1058_RS02100 0.50 +0.5
289,476 + HMPREF1058_RS02100 0.52 -0.1
289,476 + HMPREF1058_RS02100 0.52 -2.1
289,561 + HMPREF1058_RS02100 0.54 +0.6
289,693 + HMPREF1058_RS02100 0.58 -1.7
289,694 - HMPREF1058_RS02100 0.58 -1.1
289,699 + HMPREF1058_RS02100 0.58 -0.1
289,759 + HMPREF1058_RS02100 0.60 -2.4
289,759 + HMPREF1058_RS02100 0.60 -3.6
289,760 - HMPREF1058_RS02100 0.60 -3.3
289,865 - HMPREF1058_RS02100 0.64 -1.1
289,902 - HMPREF1058_RS02100 0.65 -1.1
289,902 - -2.4
289,902 - HMPREF1058_RS02100 0.65 -2.7
289,909 - HMPREF1058_RS02100 0.65 -2.1
289,919 + HMPREF1058_RS02100 0.65 -2.8
289,920 - HMPREF1058_RS02100 0.65 -4.2
289,921 + HMPREF1058_RS02100 0.65 -1.9
289,921 + HMPREF1058_RS02100 0.65 -2.8
289,967 - HMPREF1058_RS02100 0.67 -2.7
289,991 + HMPREF1058_RS02100 0.68 -1.4
289,993 + HMPREF1058_RS02100 0.68 -0.4
289,993 + HMPREF1058_RS02100 0.68 -2.8
289,994 - HMPREF1058_RS02100 0.68 -3.5
289,994 - -0.1
289,994 - HMPREF1058_RS02100 0.68 -4.4
289,994 - HMPREF1058_RS02100 0.68 -3.3
289,994 - HMPREF1058_RS02100 0.68 -3.5
290,042 - HMPREF1058_RS02100 0.69 -4.1
290,048 - HMPREF1058_RS02100 0.69 -1.7
290,069 + HMPREF1058_RS02100 0.70 -1.9
290,084 + HMPREF1058_RS02100 0.70 -1.9
290,173 + HMPREF1058_RS02100 0.73 -1.7
290,174 - HMPREF1058_RS02100 0.73 -2.0
290,176 + HMPREF1058_RS02100 0.73 -2.1
290,185 - HMPREF1058_RS02100 0.74 -2.7
290,185 - HMPREF1058_RS02100 0.74 -2.7
290,210 - HMPREF1058_RS02100 0.74 -2.2
290,239 - HMPREF1058_RS02100 0.75 -1.7
290,275 + HMPREF1058_RS02100 0.76 -0.7
290,275 + HMPREF1058_RS02100 0.76 -2.3
290,276 - HMPREF1058_RS02100 0.76 -4.3
290,314 + HMPREF1058_RS02100 0.78 +0.2
290,416 + HMPREF1058_RS02100 0.81 -2.6
290,417 - HMPREF1058_RS02100 0.81 -0.1
290,417 - HMPREF1058_RS02100 0.81 -3.3
290,489 + HMPREF1058_RS02100 0.83 -0.1
290,498 + HMPREF1058_RS02100 0.83 -1.4
290,549 - HMPREF1058_RS02100 0.85 -2.4
290,630 - HMPREF1058_RS02100 0.87 -1.1
290,635 + HMPREF1058_RS02100 0.88 -0.6
290,636 - HMPREF1058_RS02100 0.88 -3.8
290,695 - HMPREF1058_RS02100 0.89 -2.4
290,857 + -0.4
290,884 + -0.1
290,885 - -4.2
290,896 + +1.0
290,949 + -1.1
290,993 - -2.4
291,020 + -0.9
291,021 - -1.7
291,021 - -3.1
291,028 + +0.9
291,028 + +0.4
291,029 - -1.1
291,083 + -3.1
291,103 + -2.4
291,103 + -2.9
291,104 - -1.1
291,106 - -1.4
291,174 + -4.3
291,192 + HMPREF1058_RS02095 0.11 -3.3
291,192 + HMPREF1058_RS02095 0.11 -2.9
291,281 + HMPREF1058_RS02095 0.17 -0.1
291,281 + HMPREF1058_RS02095 0.17 -3.1
291,282 - HMPREF1058_RS02095 0.17 -2.4
291,282 - HMPREF1058_RS02095 0.17 -2.7
291,415 - HMPREF1058_RS02095 0.27 -1.7
291,422 - HMPREF1058_RS02095 0.27 -2.4
291,423 + HMPREF1058_RS02095 0.27 -2.0
291,423 + HMPREF1058_RS02095 0.27 -2.1
291,424 - HMPREF1058_RS02095 0.27 -2.9
291,424 - HMPREF1058_RS02095 0.27 -4.7
291,428 + HMPREF1058_RS02095 0.28 -3.8
291,514 - HMPREF1058_RS02095 0.34 -2.1
291,568 + HMPREF1058_RS02095 0.38 -2.6
291,569 - HMPREF1058_RS02095 0.38 -1.7
291,703 - HMPREF1058_RS02095 0.47 -1.1
291,809 + HMPREF1058_RS02095 0.55 +0.9
291,810 - HMPREF1058_RS02095 0.55 -2.9
291,932 - HMPREF1058_RS02095 0.64 -3.1
291,932 - HMPREF1058_RS02095 0.64 -1.7
291,932 - HMPREF1058_RS02095 0.64 -2.4
291,933 + HMPREF1058_RS02095 0.64 -1.4
291,934 - HMPREF1058_RS02095 0.64 -2.9
291,985 - HMPREF1058_RS02095 0.68 -3.7
291,999 + HMPREF1058_RS02095 0.69 -2.5

Or see this region's nucleotide sequence