Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02095

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02100 and HMPREF1058_RS02095 are separated by 11 nucleotidesHMPREF1058_RS02095 and HMPREF1058_RS02090 are separated by 23 nucleotidesHMPREF1058_RS02090 and HMPREF1058_RS02085 are separated by 29 nucleotides HMPREF1058_RS02100: HMPREF1058_RS02100 - efflux RND transporter permease subunit, at 287,816 to 291,034 _RS02100 HMPREF1058_RS02095: HMPREF1058_RS02095 - efflux transporter outer membrane subunit, at 291,046 to 292,431 _RS02095 HMPREF1058_RS02090: HMPREF1058_RS02090 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 292,455 to 293,222 _RS02090 HMPREF1058_RS02085: HMPREF1058_RS02085 - TetR/AcrR family transcriptional regulator, at 293,252 to 293,905 _RS02085 Position (kb) 291 292 293Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 290.048 kb on - strand, within HMPREF1058_RS02100at 290.069 kb on + strand, within HMPREF1058_RS02100at 290.084 kb on + strand, within HMPREF1058_RS02100at 290.173 kb on + strand, within HMPREF1058_RS02100at 290.174 kb on - strand, within HMPREF1058_RS02100at 290.176 kb on + strand, within HMPREF1058_RS02100at 290.185 kb on - strand, within HMPREF1058_RS02100at 290.185 kb on - strand, within HMPREF1058_RS02100at 290.210 kb on - strand, within HMPREF1058_RS02100at 290.239 kb on - strand, within HMPREF1058_RS02100at 290.275 kb on + strand, within HMPREF1058_RS02100at 290.275 kb on + strand, within HMPREF1058_RS02100at 290.276 kb on - strand, within HMPREF1058_RS02100at 290.314 kb on + strand, within HMPREF1058_RS02100at 290.416 kb on + strand, within HMPREF1058_RS02100at 290.417 kb on - strand, within HMPREF1058_RS02100at 290.417 kb on - strand, within HMPREF1058_RS02100at 290.489 kb on + strand, within HMPREF1058_RS02100at 290.498 kb on + strand, within HMPREF1058_RS02100at 290.549 kb on - strand, within HMPREF1058_RS02100at 290.630 kb on - strand, within HMPREF1058_RS02100at 290.635 kb on + strand, within HMPREF1058_RS02100at 290.636 kb on - strand, within HMPREF1058_RS02100at 290.695 kb on - strand, within HMPREF1058_RS02100at 290.857 kb on + strandat 290.884 kb on + strandat 290.885 kb on - strandat 290.896 kb on + strandat 290.949 kb on + strandat 290.993 kb on - strandat 291.020 kb on + strandat 291.021 kb on - strandat 291.021 kb on - strandat 291.028 kb on + strandat 291.028 kb on + strandat 291.029 kb on - strandat 291.083 kb on + strandat 291.103 kb on + strandat 291.103 kb on + strandat 291.104 kb on - strandat 291.106 kb on - strandat 291.174 kb on + strandat 291.192 kb on + strand, within HMPREF1058_RS02095at 291.192 kb on + strand, within HMPREF1058_RS02095at 291.281 kb on + strand, within HMPREF1058_RS02095at 291.281 kb on + strand, within HMPREF1058_RS02095at 291.282 kb on - strand, within HMPREF1058_RS02095at 291.282 kb on - strand, within HMPREF1058_RS02095at 291.415 kb on - strand, within HMPREF1058_RS02095at 291.422 kb on - strand, within HMPREF1058_RS02095at 291.423 kb on + strand, within HMPREF1058_RS02095at 291.423 kb on + strand, within HMPREF1058_RS02095at 291.424 kb on - strand, within HMPREF1058_RS02095at 291.424 kb on - strand, within HMPREF1058_RS02095at 291.428 kb on + strand, within HMPREF1058_RS02095at 291.514 kb on - strand, within HMPREF1058_RS02095at 291.568 kb on + strand, within HMPREF1058_RS02095at 291.569 kb on - strand, within HMPREF1058_RS02095at 291.703 kb on - strand, within HMPREF1058_RS02095at 291.809 kb on + strand, within HMPREF1058_RS02095at 291.810 kb on - strand, within HMPREF1058_RS02095at 291.932 kb on - strand, within HMPREF1058_RS02095at 291.932 kb on - strand, within HMPREF1058_RS02095at 291.932 kb on - strand, within HMPREF1058_RS02095at 291.933 kb on + strand, within HMPREF1058_RS02095at 291.934 kb on - strand, within HMPREF1058_RS02095at 291.985 kb on - strand, within HMPREF1058_RS02095at 291.999 kb on + strand, within HMPREF1058_RS02095at 292.148 kb on - strand, within HMPREF1058_RS02095at 292.158 kb on + strand, within HMPREF1058_RS02095at 292.159 kb on - strand, within HMPREF1058_RS02095at 292.182 kb on - strand, within HMPREF1058_RS02095at 292.206 kb on + strand, within HMPREF1058_RS02095at 292.380 kb on + strandat 292.429 kb on + strandat 292.448 kb on + strandat 292.455 kb on - strandat 292.460 kb on + strandat 292.474 kb on - strandat 292.474 kb on - strandat 292.511 kb on + strandat 292.536 kb on - strand, within HMPREF1058_RS02090at 292.549 kb on + strand, within HMPREF1058_RS02090at 292.560 kb on - strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.564 kb on + strand, within HMPREF1058_RS02090at 292.568 kb on + strand, within HMPREF1058_RS02090at 292.569 kb on - strand, within HMPREF1058_RS02090at 292.624 kb on - strand, within HMPREF1058_RS02090at 292.637 kb on - strand, within HMPREF1058_RS02090at 292.667 kb on + strand, within HMPREF1058_RS02090at 292.693 kb on + strand, within HMPREF1058_RS02090at 292.693 kb on + strand, within HMPREF1058_RS02090at 292.698 kb on - strand, within HMPREF1058_RS02090at 292.700 kb on + strand, within HMPREF1058_RS02090at 292.704 kb on - strand, within HMPREF1058_RS02090at 292.782 kb on - strand, within HMPREF1058_RS02090at 292.782 kb on - strand, within HMPREF1058_RS02090at 292.799 kb on + strand, within HMPREF1058_RS02090at 292.799 kb on + strand, within HMPREF1058_RS02090at 292.833 kb on - strandat 292.833 kb on - strand, within HMPREF1058_RS02090at 292.886 kb on + strand, within HMPREF1058_RS02090at 292.893 kb on - strand, within HMPREF1058_RS02090at 292.904 kb on - strand, within HMPREF1058_RS02090at 292.935 kb on + strand, within HMPREF1058_RS02090at 292.936 kb on - strand, within HMPREF1058_RS02090at 292.964 kb on + strand, within HMPREF1058_RS02090at 293.076 kb on - strand, within HMPREF1058_RS02090at 293.077 kb on + strand, within HMPREF1058_RS02090at 293.077 kb on + strand, within HMPREF1058_RS02090at 293.094 kb on - strand, within HMPREF1058_RS02090at 293.095 kb on + strand, within HMPREF1058_RS02090at 293.101 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.112 kb on - strand, within HMPREF1058_RS02090at 293.118 kb on - strand, within HMPREF1058_RS02090at 293.202 kb on - strandat 293.220 kb on + strandat 293.242 kb on + strandat 293.248 kb on - strandat 293.380 kb on - strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.383 kb on + strand, within HMPREF1058_RS02085at 293.389 kb on + strand, within HMPREF1058_RS02085at 293.395 kb on + strand, within HMPREF1058_RS02085

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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290,048 - HMPREF1058_RS02100 0.69 -1.7
290,069 + HMPREF1058_RS02100 0.70 -1.9
290,084 + HMPREF1058_RS02100 0.70 -1.9
290,173 + HMPREF1058_RS02100 0.73 -1.7
290,174 - HMPREF1058_RS02100 0.73 -2.0
290,176 + HMPREF1058_RS02100 0.73 -2.1
290,185 - HMPREF1058_RS02100 0.74 -2.7
290,185 - HMPREF1058_RS02100 0.74 -2.7
290,210 - HMPREF1058_RS02100 0.74 -2.2
290,239 - HMPREF1058_RS02100 0.75 -1.7
290,275 + HMPREF1058_RS02100 0.76 -0.7
290,275 + HMPREF1058_RS02100 0.76 -2.3
290,276 - HMPREF1058_RS02100 0.76 -4.3
290,314 + HMPREF1058_RS02100 0.78 +0.2
290,416 + HMPREF1058_RS02100 0.81 -2.6
290,417 - HMPREF1058_RS02100 0.81 -0.1
290,417 - HMPREF1058_RS02100 0.81 -3.3
290,489 + HMPREF1058_RS02100 0.83 -0.1
290,498 + HMPREF1058_RS02100 0.83 -1.4
290,549 - HMPREF1058_RS02100 0.85 -2.4
290,630 - HMPREF1058_RS02100 0.87 -1.1
290,635 + HMPREF1058_RS02100 0.88 -0.6
290,636 - HMPREF1058_RS02100 0.88 -3.8
290,695 - HMPREF1058_RS02100 0.89 -2.4
290,857 + -0.4
290,884 + -0.1
290,885 - -4.2
290,896 + +1.0
290,949 + -1.1
290,993 - -2.4
291,020 + -0.9
291,021 - -1.7
291,021 - -3.1
291,028 + +0.9
291,028 + +0.4
291,029 - -1.1
291,083 + -3.1
291,103 + -2.4
291,103 + -2.9
291,104 - -1.1
291,106 - -1.4
291,174 + -4.3
291,192 + HMPREF1058_RS02095 0.11 -3.3
291,192 + HMPREF1058_RS02095 0.11 -2.9
291,281 + HMPREF1058_RS02095 0.17 -0.1
291,281 + HMPREF1058_RS02095 0.17 -3.1
291,282 - HMPREF1058_RS02095 0.17 -2.4
291,282 - HMPREF1058_RS02095 0.17 -2.7
291,415 - HMPREF1058_RS02095 0.27 -1.7
291,422 - HMPREF1058_RS02095 0.27 -2.4
291,423 + HMPREF1058_RS02095 0.27 -2.0
291,423 + HMPREF1058_RS02095 0.27 -2.1
291,424 - HMPREF1058_RS02095 0.27 -2.9
291,424 - HMPREF1058_RS02095 0.27 -4.7
291,428 + HMPREF1058_RS02095 0.28 -3.8
291,514 - HMPREF1058_RS02095 0.34 -2.1
291,568 + HMPREF1058_RS02095 0.38 -2.6
291,569 - HMPREF1058_RS02095 0.38 -1.7
291,703 - HMPREF1058_RS02095 0.47 -1.1
291,809 + HMPREF1058_RS02095 0.55 +0.9
291,810 - HMPREF1058_RS02095 0.55 -2.9
291,932 - HMPREF1058_RS02095 0.64 -3.1
291,932 - HMPREF1058_RS02095 0.64 -1.7
291,932 - HMPREF1058_RS02095 0.64 -2.4
291,933 + HMPREF1058_RS02095 0.64 -1.4
291,934 - HMPREF1058_RS02095 0.64 -2.9
291,985 - HMPREF1058_RS02095 0.68 -3.7
291,999 + HMPREF1058_RS02095 0.69 -2.5
292,148 - HMPREF1058_RS02095 0.80 -2.7
292,158 + HMPREF1058_RS02095 0.80 -2.7
292,159 - HMPREF1058_RS02095 0.80 -5.0
292,182 - HMPREF1058_RS02095 0.82 -4.2
292,206 + HMPREF1058_RS02095 0.84 -0.9
292,380 + -2.7
292,429 + +0.9
292,448 + +1.6
292,455 - +1.9
292,460 + -0.5
292,474 - -2.0
292,474 - -1.0
292,511 + -2.7
292,536 - HMPREF1058_RS02090 0.11 -2.7
292,549 + HMPREF1058_RS02090 0.12 +0.6
292,560 - HMPREF1058_RS02090 0.14 -1.7
292,564 + HMPREF1058_RS02090 0.14 +2.2
292,564 + HMPREF1058_RS02090 0.14 -0.3
292,564 + HMPREF1058_RS02090 0.14 -2.3
292,564 + HMPREF1058_RS02090 0.14 -2.4
292,568 + HMPREF1058_RS02090 0.15 +2.3
292,569 - HMPREF1058_RS02090 0.15 -1.1
292,624 - HMPREF1058_RS02090 0.22 +0.5
292,637 - HMPREF1058_RS02090 0.24 -0.1
292,667 + HMPREF1058_RS02090 0.28 -0.8
292,693 + HMPREF1058_RS02090 0.31 -0.7
292,693 + HMPREF1058_RS02090 0.31 +0.8
292,698 - HMPREF1058_RS02090 0.32 -1.7
292,700 + HMPREF1058_RS02090 0.32 +2.1
292,704 - HMPREF1058_RS02090 0.32 -2.6
292,782 - HMPREF1058_RS02090 0.43 -0.3
292,782 - HMPREF1058_RS02090 0.43 -1.1
292,799 + HMPREF1058_RS02090 0.45 +1.0
292,799 + HMPREF1058_RS02090 0.45 -0.7
292,833 - -0.1
292,833 - HMPREF1058_RS02090 0.49 +0.5
292,886 + HMPREF1058_RS02090 0.56 -2.1
292,893 - HMPREF1058_RS02090 0.57 -0.4
292,904 - HMPREF1058_RS02090 0.58 +0.8
292,935 + HMPREF1058_RS02090 0.62 +1.9
292,936 - HMPREF1058_RS02090 0.63 +0.1
292,964 + HMPREF1058_RS02090 0.66 +2.1
293,076 - HMPREF1058_RS02090 0.81 +1.3
293,077 + HMPREF1058_RS02090 0.81 -2.6
293,077 + HMPREF1058_RS02090 0.81 +2.5
293,094 - HMPREF1058_RS02090 0.83 -1.5
293,095 + HMPREF1058_RS02090 0.83 -2.9
293,101 - HMPREF1058_RS02090 0.84 -0.1
293,112 - HMPREF1058_RS02090 0.86 -1.7
293,112 - HMPREF1058_RS02090 0.86 +1.0
293,112 - HMPREF1058_RS02090 0.86 -0.1
293,118 - HMPREF1058_RS02090 0.86 +0.2
293,202 - +0.8
293,220 + +0.9
293,242 + +2.2
293,248 - +2.7
293,380 - HMPREF1058_RS02085 0.20 +0.6
293,383 + HMPREF1058_RS02085 0.20 -0.6
293,383 + HMPREF1058_RS02085 0.20 +1.5
293,383 + HMPREF1058_RS02085 0.20 -1.1
293,383 + HMPREF1058_RS02085 0.20 +0.6
293,389 + HMPREF1058_RS02085 0.21 -0.8
293,395 + HMPREF1058_RS02085 0.22 +1.1

Or see this region's nucleotide sequence