Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01695

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01700 and HMPREF1058_RS01695 are separated by 21 nucleotidesHMPREF1058_RS01695 and HMPREF1058_RS01690 are separated by 243 nucleotides HMPREF1058_RS01700: HMPREF1058_RS01700 - altronate dehydratase, at 63,236 to 64,726 _RS01700 HMPREF1058_RS01695: HMPREF1058_RS01695 - LacI family DNA-binding transcriptional regulator, at 64,748 to 65,821 _RS01695 HMPREF1058_RS01690: HMPREF1058_RS01690 - sugar kinase, at 66,065 to 67,087 _RS01690 Position (kb) 64 65 66Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 63.758 kb on + strand, within HMPREF1058_RS01700at 63.758 kb on + strand, within HMPREF1058_RS01700at 63.884 kb on - strandat 64.000 kb on - strand, within HMPREF1058_RS01700at 64.067 kb on + strand, within HMPREF1058_RS01700at 64.368 kb on - strand, within HMPREF1058_RS01700at 64.447 kb on - strand, within HMPREF1058_RS01700at 64.548 kb on + strand, within HMPREF1058_RS01700at 64.549 kb on - strand, within HMPREF1058_RS01700at 64.675 kb on + strandat 64.686 kb on - strandat 64.713 kb on + strandat 64.730 kb on + strandat 64.812 kb on + strandat 64.812 kb on + strandat 64.813 kb on - strandat 64.952 kb on + strand, within HMPREF1058_RS01695at 64.953 kb on - strand, within HMPREF1058_RS01695at 65.001 kb on + strand, within HMPREF1058_RS01695at 65.001 kb on + strand, within HMPREF1058_RS01695at 65.002 kb on - strand, within HMPREF1058_RS01695at 65.047 kb on + strand, within HMPREF1058_RS01695at 65.129 kb on + strand, within HMPREF1058_RS01695at 65.353 kb on + strand, within HMPREF1058_RS01695at 65.354 kb on - strand, within HMPREF1058_RS01695at 65.357 kb on + strand, within HMPREF1058_RS01695at 65.357 kb on + strand, within HMPREF1058_RS01695at 65.357 kb on + strand, within HMPREF1058_RS01695at 65.358 kb on - strand, within HMPREF1058_RS01695at 65.359 kb on + strand, within HMPREF1058_RS01695at 65.361 kb on + strand, within HMPREF1058_RS01695at 65.361 kb on + strand, within HMPREF1058_RS01695at 65.488 kb on - strand, within HMPREF1058_RS01695at 65.505 kb on + strand, within HMPREF1058_RS01695at 65.506 kb on - strandat 65.655 kb on + strand, within HMPREF1058_RS01695at 65.656 kb on - strand, within HMPREF1058_RS01695at 65.660 kb on - strand, within HMPREF1058_RS01695at 65.660 kb on - strand, within HMPREF1058_RS01695at 65.827 kb on - strandat 65.831 kb on - strandat 65.835 kb on - strandat 65.837 kb on - strandat 65.881 kb on + strandat 65.913 kb on + strandat 65.913 kb on + strandat 65.987 kb on + strandat 66.038 kb on + strandat 66.215 kb on + strand, within HMPREF1058_RS01690at 66.279 kb on - strand, within HMPREF1058_RS01690at 66.329 kb on + strand, within HMPREF1058_RS01690at 66.330 kb on - strand, within HMPREF1058_RS01690at 66.375 kb on - strand, within HMPREF1058_RS01690at 66.434 kb on - strand, within HMPREF1058_RS01690at 66.630 kb on + strand, within HMPREF1058_RS01690at 66.630 kb on + strand, within HMPREF1058_RS01690at 66.630 kb on + strand, within HMPREF1058_RS01690at 66.630 kb on + strand, within HMPREF1058_RS01690at 66.631 kb on - strand, within HMPREF1058_RS01690at 66.631 kb on - strand, within HMPREF1058_RS01690at 66.636 kb on + strand, within HMPREF1058_RS01690at 66.636 kb on + strand, within HMPREF1058_RS01690at 66.636 kb on + strand, within HMPREF1058_RS01690at 66.637 kb on - strand, within HMPREF1058_RS01690at 66.640 kb on + strand, within HMPREF1058_RS01690at 66.642 kb on + strand, within HMPREF1058_RS01690at 66.642 kb on + strand, within HMPREF1058_RS01690at 66.725 kb on + strand, within HMPREF1058_RS01690at 66.745 kb on + strand, within HMPREF1058_RS01690at 66.767 kb on - strand, within HMPREF1058_RS01690at 66.770 kb on + strand, within HMPREF1058_RS01690at 66.771 kb on - strand, within HMPREF1058_RS01690at 66.771 kb on - strand, within HMPREF1058_RS01690at 66.782 kb on - strand, within HMPREF1058_RS01690

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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63,758 + HMPREF1058_RS01700 0.35 -1.1
63,758 + HMPREF1058_RS01700 0.35 -1.8
63,884 - +0.2
64,000 - HMPREF1058_RS01700 0.51 +0.9
64,067 + HMPREF1058_RS01700 0.56 -1.1
64,368 - HMPREF1058_RS01700 0.76 -2.4
64,447 - HMPREF1058_RS01700 0.81 -0.9
64,548 + HMPREF1058_RS01700 0.88 -1.9
64,549 - HMPREF1058_RS01700 0.88 -0.8
64,675 + +0.2
64,686 - -1.8
64,713 + -1.1
64,730 + -0.2
64,812 + -2.4
64,812 + -0.8
64,813 - -1.4
64,952 + HMPREF1058_RS01695 0.19 -3.6
64,953 - HMPREF1058_RS01695 0.19 +0.2
65,001 + HMPREF1058_RS01695 0.24 -0.8
65,001 + HMPREF1058_RS01695 0.24 -0.8
65,002 - HMPREF1058_RS01695 0.24 -4.3
65,047 + HMPREF1058_RS01695 0.28 -3.3
65,129 + HMPREF1058_RS01695 0.35 -2.6
65,353 + HMPREF1058_RS01695 0.56 -3.4
65,354 - HMPREF1058_RS01695 0.56 -1.6
65,357 + HMPREF1058_RS01695 0.57 +0.2
65,357 + HMPREF1058_RS01695 0.57 -1.4
65,357 + HMPREF1058_RS01695 0.57 -0.8
65,358 - HMPREF1058_RS01695 0.57 -0.8
65,359 + HMPREF1058_RS01695 0.57 -1.8
65,361 + HMPREF1058_RS01695 0.57 -1.4
65,361 + HMPREF1058_RS01695 0.57 -1.4
65,488 - HMPREF1058_RS01695 0.69 -1.2
65,505 + HMPREF1058_RS01695 0.70 -1.4
65,506 - -0.8
65,655 + HMPREF1058_RS01695 0.84 -2.6
65,656 - HMPREF1058_RS01695 0.85 -1.4
65,660 - HMPREF1058_RS01695 0.85 -2.1
65,660 - HMPREF1058_RS01695 0.85 -2.1
65,827 - +0.2
65,831 - -0.4
65,835 - -0.8
65,837 - -1.0
65,881 + -0.0
65,913 + +1.2
65,913 + -0.2
65,987 + +0.2
66,038 + +0.5
66,215 + HMPREF1058_RS01690 0.15 -2.1
66,279 - HMPREF1058_RS01690 0.21 -0.8
66,329 + HMPREF1058_RS01690 0.26 +0.2
66,330 - HMPREF1058_RS01690 0.26 -1.8
66,375 - HMPREF1058_RS01690 0.30 -1.8
66,434 - HMPREF1058_RS01690 0.36 -0.9
66,630 + HMPREF1058_RS01690 0.55 -1.4
66,630 + HMPREF1058_RS01690 0.55 -1.4
66,630 + HMPREF1058_RS01690 0.55 +0.2
66,630 + HMPREF1058_RS01690 0.55 -2.4
66,631 - HMPREF1058_RS01690 0.55 +0.2
66,631 - HMPREF1058_RS01690 0.55 -0.8
66,636 + HMPREF1058_RS01690 0.56 -2.5
66,636 + HMPREF1058_RS01690 0.56 -0.8
66,636 + HMPREF1058_RS01690 0.56 +0.2
66,637 - HMPREF1058_RS01690 0.56 -1.4
66,640 + HMPREF1058_RS01690 0.56 -1.6
66,642 + HMPREF1058_RS01690 0.56 -2.6
66,642 + HMPREF1058_RS01690 0.56 -2.1
66,725 + HMPREF1058_RS01690 0.65 -3.8
66,745 + HMPREF1058_RS01690 0.66 +0.2
66,767 - HMPREF1058_RS01690 0.69 -1.4
66,770 + HMPREF1058_RS01690 0.69 -0.4
66,771 - HMPREF1058_RS01690 0.69 -1.8
66,771 - HMPREF1058_RS01690 0.69 -0.8
66,782 - HMPREF1058_RS01690 0.70 -4.0

Or see this region's nucleotide sequence