Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS00960

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

No fitness data for strains within 18,377 to 21,765
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500 ntHMPREF1058_RS00965 and HMPREF1058_RS00960 overlap by 4 nucleotidesHMPREF1058_RS00960 and HMPREF1058_RS00955 are separated by 63 nucleotides HMPREF1058_RS00965: HMPREF1058_RS00965 - rhamnogalacturonan lyase, at 17,473 to 19,380 _RS00965 HMPREF1058_RS00960: HMPREF1058_RS00960 - glycoside hydrolase family 28 protein, at 19,377 to 20,765 _RS00960 HMPREF1058_RS00955: HMPREF1058_RS00955 - glycosyl hydrolase 115 family protein, at 20,829 to 23,180 _RS00955