Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00610 and HMPREF1058_RS00605 are separated by 41 nucleotides HMPREF1058_RS00605 and HMPREF1058_RS00600 are separated by 106 nucleotides HMPREF1058_RS00600 and HMPREF1058_RS00595 are separated by 175 nucleotides HMPREF1058_RS00595 and HMPREF1058_RS00590 are separated by 87 nucleotides
HMPREF1058_RS00610: HMPREF1058_RS00610 - DsbA family protein, at 36,315 to 36,926
_RS00610
HMPREF1058_RS00605: HMPREF1058_RS00605 - prolipoprotein diacylglyceryl transferase, at 36,968 to 37,774
_RS00605
HMPREF1058_RS00600: HMPREF1058_RS00600 - diaminopimelate dehydrogenase, at 37,881 to 38,780
_RS00600
HMPREF1058_RS00595: HMPREF1058_RS00595 - Holliday junction branch migration protein RuvA, at 38,956 to 39,549
_RS00595
HMPREF1058_RS00590: HMPREF1058_RS00590 - hypothetical protein, at 39,637 to 40,461
_RS00590
Position (kb) 37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 36.903 kb on + strand at 36.903 kb on + strand at 36.995 kb on + strand at 37.002 kb on + strand at 37.043 kb on + strand at 37.049 kb on - strand, within HMPREF1058_RS00605 at 37.121 kb on + strand, within HMPREF1058_RS00605 at 37.123 kb on + strand, within HMPREF1058_RS00605 at 37.124 kb on - strand, within HMPREF1058_RS00605 at 37.133 kb on + strand, within HMPREF1058_RS00605 at 37.134 kb on - strand, within HMPREF1058_RS00605 at 37.170 kb on + strand, within HMPREF1058_RS00605 at 37.170 kb on + strand, within HMPREF1058_RS00605 at 37.171 kb on - strand, within HMPREF1058_RS00605 at 37.171 kb on - strand, within HMPREF1058_RS00605 at 37.174 kb on + strand, within HMPREF1058_RS00605 at 37.174 kb on + strand, within HMPREF1058_RS00605 at 37.175 kb on - strand, within HMPREF1058_RS00605 at 37.175 kb on - strand, within HMPREF1058_RS00605 at 37.175 kb on - strand, within HMPREF1058_RS00605 at 37.175 kb on - strand, within HMPREF1058_RS00605 at 37.175 kb on - strand, within HMPREF1058_RS00605 at 37.175 kb on - strand, within HMPREF1058_RS00605 at 37.179 kb on + strand, within HMPREF1058_RS00605 at 37.328 kb on + strand, within HMPREF1058_RS00605 at 37.548 kb on + strand, within HMPREF1058_RS00605 at 37.548 kb on + strand, within HMPREF1058_RS00605 at 37.728 kb on - strand at 37.732 kb on + strand at 37.737 kb on - strand at 37.737 kb on - strand at 37.741 kb on + strand at 37.757 kb on + strand at 37.757 kb on + strand at 37.762 kb on + strand at 37.763 kb on - strand at 37.781 kb on - strand at 37.831 kb on + strand at 37.883 kb on - strand at 37.884 kb on + strand at 37.952 kb on + strand at 37.952 kb on + strand at 37.952 kb on + strand at 37.953 kb on - strand at 38.024 kb on + strand, within HMPREF1058_RS00600 at 38.028 kb on - strand, within HMPREF1058_RS00600 at 38.161 kb on - strand, within HMPREF1058_RS00600 at 38.230 kb on + strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.353 kb on + strand, within HMPREF1058_RS00600 at 38.353 kb on + strand, within HMPREF1058_RS00600 at 38.354 kb on - strand, within HMPREF1058_RS00600 at 38.357 kb on + strand, within HMPREF1058_RS00600 at 38.358 kb on - strand at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.435 kb on + strand, within HMPREF1058_RS00600 at 38.514 kb on - strand, within HMPREF1058_RS00600 at 38.514 kb on - strand, within HMPREF1058_RS00600 at 38.518 kb on - strand, within HMPREF1058_RS00600 at 38.616 kb on + strand, within HMPREF1058_RS00600 at 38.618 kb on + strand, within HMPREF1058_RS00600 at 38.619 kb on - strand, within HMPREF1058_RS00600 at 38.728 kb on - strand at 38.893 kb on + strand at 38.960 kb on + strand at 39.054 kb on + strand, within HMPREF1058_RS00595 at 39.085 kb on - strand, within HMPREF1058_RS00595 at 39.096 kb on + strand, within HMPREF1058_RS00595 at 39.124 kb on + strand, within HMPREF1058_RS00595 at 39.128 kb on + strand, within HMPREF1058_RS00595 at 39.129 kb on - strand, within HMPREF1058_RS00595 at 39.326 kb on + strand, within HMPREF1058_RS00595 at 39.327 kb on - strand, within HMPREF1058_RS00595 at 39.548 kb on - strand at 39.548 kb on - strand at 39.556 kb on + strand at 39.557 kb on - strand at 39.638 kb on + strand at 39.639 kb on - strand at 39.639 kb on - strand at 39.705 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 36,903 + -2.2 36,903 + +2.3 36,995 + +1.3 37,002 + -0.9 37,043 + +0.5 37,049 - HMPREF1058_RS00605 0.10 +0.2 37,121 + HMPREF1058_RS00605 0.19 -0.4 37,123 + HMPREF1058_RS00605 0.19 +1.8 37,124 - HMPREF1058_RS00605 0.19 -0.6 37,133 + HMPREF1058_RS00605 0.20 +1.6 37,134 - HMPREF1058_RS00605 0.21 -0.1 37,170 + HMPREF1058_RS00605 0.25 -0.0 37,170 + HMPREF1058_RS00605 0.25 -1.9 37,171 - HMPREF1058_RS00605 0.25 -1.8 37,171 - HMPREF1058_RS00605 0.25 +0.6 37,174 + HMPREF1058_RS00605 0.26 -0.3 37,174 + HMPREF1058_RS00605 0.26 -2.8 37,175 - HMPREF1058_RS00605 0.26 -0.9 37,175 - HMPREF1058_RS00605 0.26 +0.5 37,175 - HMPREF1058_RS00605 0.26 -0.5 37,175 - HMPREF1058_RS00605 0.26 -2.1 37,175 - HMPREF1058_RS00605 0.26 +2.4 37,175 - HMPREF1058_RS00605 0.26 +2.1 37,179 + HMPREF1058_RS00605 0.26 +2.4 37,328 + HMPREF1058_RS00605 0.45 -0.2 37,548 + HMPREF1058_RS00605 0.72 -0.2 37,548 + HMPREF1058_RS00605 0.72 +1.8 37,728 - +0.8 37,732 + +0.7 37,737 - -0.4 37,737 - +0.2 37,741 + -2.3 37,757 + +0.6 37,757 + -1.2 37,762 + +1.5 37,763 - +1.8 37,781 - +1.8 37,831 + -1.2 37,883 - +2.1 37,884 + -1.8 37,952 + -1.4 37,952 + -0.2 37,952 + -1.8 37,953 - -3.2 38,024 + HMPREF1058_RS00600 0.16 -0.6 38,028 - HMPREF1058_RS00600 0.16 -2.2 38,161 - HMPREF1058_RS00600 0.31 -1.0 38,230 + HMPREF1058_RS00600 0.39 -3.2 38,231 - HMPREF1058_RS00600 0.39 -1.5 38,231 - HMPREF1058_RS00600 0.39 -1.0 38,231 - HMPREF1058_RS00600 0.39 -3.9 38,231 - HMPREF1058_RS00600 0.39 -4.1 38,353 + HMPREF1058_RS00600 0.52 -4.6 38,353 + HMPREF1058_RS00600 0.52 -0.2 38,354 - HMPREF1058_RS00600 0.53 -2.8 38,357 + HMPREF1058_RS00600 0.53 -2.2 38,358 - -0.2 38,358 - HMPREF1058_RS00600 0.53 -3.6 38,358 - HMPREF1058_RS00600 0.53 -1.8 38,358 - HMPREF1058_RS00600 0.53 -3.9 38,358 - HMPREF1058_RS00600 0.53 -1.2 38,358 - HMPREF1058_RS00600 0.53 -2.2 38,435 + HMPREF1058_RS00600 0.62 -3.5 38,514 - HMPREF1058_RS00600 0.70 -1.2 38,514 - HMPREF1058_RS00600 0.70 -3.5 38,518 - HMPREF1058_RS00600 0.71 +0.9 38,616 + HMPREF1058_RS00600 0.82 -3.0 38,618 + HMPREF1058_RS00600 0.82 -2.2 38,619 - HMPREF1058_RS00600 0.82 -1.8 38,728 - -2.1 38,893 + +0.2 38,960 + -2.8 39,054 + HMPREF1058_RS00595 0.16 -1.8 39,085 - HMPREF1058_RS00595 0.22 -1.8 39,096 + HMPREF1058_RS00595 0.24 -1.8 39,124 + HMPREF1058_RS00595 0.28 -0.2 39,128 + HMPREF1058_RS00595 0.29 -0.2 39,129 - HMPREF1058_RS00595 0.29 -1.2 39,326 + HMPREF1058_RS00595 0.62 -2.5 39,327 - HMPREF1058_RS00595 0.62 -2.5 39,548 - +1.4 39,548 - +1.6 39,556 + -1.4 39,557 - -0.1 39,638 + +0.0 39,639 - +0.9 39,639 - -0.0 39,705 + -1.8
Or see this region's nucleotide sequence