Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00600 and HMPREF1058_RS00595 are separated by 175 nucleotides HMPREF1058_RS00595 and HMPREF1058_RS00590 are separated by 87 nucleotides
HMPREF1058_RS00600: HMPREF1058_RS00600 - diaminopimelate dehydrogenase, at 37,881 to 38,780
_RS00600
HMPREF1058_RS00595: HMPREF1058_RS00595 - Holliday junction branch migration protein RuvA, at 38,956 to 39,549
_RS00595
HMPREF1058_RS00590: HMPREF1058_RS00590 - hypothetical protein, at 39,637 to 40,461
_RS00590
Position (kb) 38
39
40 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 38.024 kb on + strand, within HMPREF1058_RS00600 at 38.028 kb on - strand, within HMPREF1058_RS00600 at 38.161 kb on - strand, within HMPREF1058_RS00600 at 38.230 kb on + strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.231 kb on - strand, within HMPREF1058_RS00600 at 38.353 kb on + strand, within HMPREF1058_RS00600 at 38.353 kb on + strand, within HMPREF1058_RS00600 at 38.354 kb on - strand, within HMPREF1058_RS00600 at 38.357 kb on + strand, within HMPREF1058_RS00600 at 38.358 kb on - strand at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.358 kb on - strand, within HMPREF1058_RS00600 at 38.435 kb on + strand, within HMPREF1058_RS00600 at 38.514 kb on - strand, within HMPREF1058_RS00600 at 38.514 kb on - strand, within HMPREF1058_RS00600 at 38.518 kb on - strand, within HMPREF1058_RS00600 at 38.616 kb on + strand, within HMPREF1058_RS00600 at 38.618 kb on + strand, within HMPREF1058_RS00600 at 38.619 kb on - strand, within HMPREF1058_RS00600 at 38.728 kb on - strand at 38.893 kb on + strand at 38.960 kb on + strand at 39.054 kb on + strand, within HMPREF1058_RS00595 at 39.085 kb on - strand, within HMPREF1058_RS00595 at 39.096 kb on + strand, within HMPREF1058_RS00595 at 39.124 kb on + strand, within HMPREF1058_RS00595 at 39.128 kb on + strand, within HMPREF1058_RS00595 at 39.129 kb on - strand, within HMPREF1058_RS00595 at 39.326 kb on + strand, within HMPREF1058_RS00595 at 39.327 kb on - strand, within HMPREF1058_RS00595 at 39.548 kb on - strand at 39.548 kb on - strand at 39.556 kb on + strand at 39.557 kb on - strand at 39.638 kb on + strand at 39.639 kb on - strand at 39.639 kb on - strand at 39.705 kb on + strand at 39.801 kb on - strand, within HMPREF1058_RS00590 at 39.855 kb on + strand, within HMPREF1058_RS00590 at 40.024 kb on - strand, within HMPREF1058_RS00590 at 40.029 kb on + strand, within HMPREF1058_RS00590 at 40.115 kb on + strand, within HMPREF1058_RS00590 at 40.120 kb on - strand, within HMPREF1058_RS00590 at 40.133 kb on + strand, within HMPREF1058_RS00590 at 40.134 kb on - strand, within HMPREF1058_RS00590 at 40.318 kb on + strand, within HMPREF1058_RS00590 at 40.442 kb on - strand at 40.444 kb on + strand at 40.444 kb on + strand at 40.464 kb on - strand at 40.476 kb on + strand at 40.476 kb on + strand at 40.476 kb on + strand at 40.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 38,024 + HMPREF1058_RS00600 0.16 -0.6 38,028 - HMPREF1058_RS00600 0.16 -2.2 38,161 - HMPREF1058_RS00600 0.31 -1.0 38,230 + HMPREF1058_RS00600 0.39 -3.2 38,231 - HMPREF1058_RS00600 0.39 -1.5 38,231 - HMPREF1058_RS00600 0.39 -1.0 38,231 - HMPREF1058_RS00600 0.39 -3.9 38,231 - HMPREF1058_RS00600 0.39 -4.1 38,353 + HMPREF1058_RS00600 0.52 -4.6 38,353 + HMPREF1058_RS00600 0.52 -0.2 38,354 - HMPREF1058_RS00600 0.53 -2.8 38,357 + HMPREF1058_RS00600 0.53 -2.2 38,358 - -0.2 38,358 - HMPREF1058_RS00600 0.53 -3.6 38,358 - HMPREF1058_RS00600 0.53 -1.8 38,358 - HMPREF1058_RS00600 0.53 -3.9 38,358 - HMPREF1058_RS00600 0.53 -1.2 38,358 - HMPREF1058_RS00600 0.53 -2.2 38,435 + HMPREF1058_RS00600 0.62 -3.5 38,514 - HMPREF1058_RS00600 0.70 -1.2 38,514 - HMPREF1058_RS00600 0.70 -3.5 38,518 - HMPREF1058_RS00600 0.71 +0.9 38,616 + HMPREF1058_RS00600 0.82 -3.0 38,618 + HMPREF1058_RS00600 0.82 -2.2 38,619 - HMPREF1058_RS00600 0.82 -1.8 38,728 - -2.1 38,893 + +0.2 38,960 + -2.8 39,054 + HMPREF1058_RS00595 0.16 -1.8 39,085 - HMPREF1058_RS00595 0.22 -1.8 39,096 + HMPREF1058_RS00595 0.24 -1.8 39,124 + HMPREF1058_RS00595 0.28 -0.2 39,128 + HMPREF1058_RS00595 0.29 -0.2 39,129 - HMPREF1058_RS00595 0.29 -1.2 39,326 + HMPREF1058_RS00595 0.62 -2.5 39,327 - HMPREF1058_RS00595 0.62 -2.5 39,548 - +1.4 39,548 - +1.6 39,556 + -1.4 39,557 - -0.1 39,638 + +0.0 39,639 - +0.9 39,639 - -0.0 39,705 + -1.8 39,801 - HMPREF1058_RS00590 0.20 -3.5 39,855 + HMPREF1058_RS00590 0.26 -1.2 40,024 - HMPREF1058_RS00590 0.47 -3.2 40,029 + HMPREF1058_RS00590 0.48 -1.2 40,115 + HMPREF1058_RS00590 0.58 -3.0 40,120 - HMPREF1058_RS00590 0.59 -3.2 40,133 + HMPREF1058_RS00590 0.60 -0.2 40,134 - HMPREF1058_RS00590 0.60 -3.5 40,318 + HMPREF1058_RS00590 0.83 -2.8 40,442 - -4.9 40,444 + -1.2 40,444 + -3.2 40,464 - +1.4 40,476 + -2.5 40,476 + -4.0 40,476 + -3.2 40,477 - -0.2
Or see this region's nucleotide sequence