Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00210 and HMPREF1058_RS00205 are separated by 165 nucleotides HMPREF1058_RS00205 and HMPREF1058_RS00200 overlap by 14 nucleotides HMPREF1058_RS00200 and HMPREF1058_RS00195 are separated by 2 nucleotides
HMPREF1058_RS00210: HMPREF1058_RS00210 - aspartate-semialdehyde dehydrogenase, at 31,504 to 32,514
_RS00210
HMPREF1058_RS00205: HMPREF1058_RS00205 - cation:proton antiporter, at 32,680 to 34,827
_RS00205
HMPREF1058_RS00200: HMPREF1058_RS00200 - tRNA threonylcarbamoyladenosine dehydratase, at 34,814 to 35,536
_RS00200
HMPREF1058_RS00195: HMPREF1058_RS00195 - ABC transporter ATP-binding protein, at 35,539 to 36,198
_RS00195
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 32.550 kb on - strand at 32.561 kb on - strand at 32.575 kb on - strand at 32.579 kb on - strand at 32.687 kb on + strand at 32.702 kb on + strand at 32.702 kb on + strand at 32.724 kb on + strand at 32.813 kb on + strand at 32.813 kb on + strand at 32.902 kb on + strand, within HMPREF1058_RS00205 at 32.985 kb on + strand, within HMPREF1058_RS00205 at 33.105 kb on + strand, within HMPREF1058_RS00205 at 33.211 kb on + strand, within HMPREF1058_RS00205 at 33.213 kb on + strand at 33.213 kb on + strand, within HMPREF1058_RS00205 at 33.217 kb on + strand, within HMPREF1058_RS00205 at 33.233 kb on + strand, within HMPREF1058_RS00205 at 33.288 kb on + strand at 33.420 kb on + strand at 33.560 kb on + strand, within HMPREF1058_RS00205 at 33.560 kb on + strand, within HMPREF1058_RS00205 at 33.560 kb on + strand, within HMPREF1058_RS00205 at 33.662 kb on + strand, within HMPREF1058_RS00205 at 33.759 kb on + strand, within HMPREF1058_RS00205 at 33.759 kb on + strand, within HMPREF1058_RS00205 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.837 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.839 kb on + strand, within HMPREF1058_RS00205 at 33.959 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.047 kb on + strand, within HMPREF1058_RS00205 at 34.167 kb on + strand, within HMPREF1058_RS00205 at 34.189 kb on + strand, within HMPREF1058_RS00205 at 34.211 kb on + strand, within HMPREF1058_RS00205 at 34.310 kb on + strand, within HMPREF1058_RS00205 at 34.326 kb on + strand, within HMPREF1058_RS00205 at 34.458 kb on + strand, within HMPREF1058_RS00205 at 34.768 kb on + strand at 34.830 kb on + strand at 34.908 kb on + strand, within HMPREF1058_RS00200 at 35.213 kb on + strand, within HMPREF1058_RS00200 at 35.218 kb on + strand, within HMPREF1058_RS00200 at 35.220 kb on + strand, within HMPREF1058_RS00200 at 35.222 kb on + strand, within HMPREF1058_RS00200 at 35.224 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.321 kb on + strand, within HMPREF1058_RS00200 at 35.401 kb on + strand, within HMPREF1058_RS00200 at 35.480 kb on + strand at 35.482 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 32,550 - +2.7 32,561 - +2.3 32,575 - +1.8 32,579 - -0.1 32,687 + -1.8 32,702 + -1.4 32,702 + -2.7 32,724 + -2.8 32,813 + -3.1 32,813 + -3.0 32,902 + HMPREF1058_RS00205 0.10 -2.7 32,985 + HMPREF1058_RS00205 0.14 -2.6 33,105 + HMPREF1058_RS00205 0.20 -2.9 33,211 + HMPREF1058_RS00205 0.25 -4.1 33,213 + -1.7 33,213 + HMPREF1058_RS00205 0.25 -1.3 33,217 + HMPREF1058_RS00205 0.25 -2.7 33,233 + HMPREF1058_RS00205 0.26 -2.4 33,288 + -0.1 33,420 + -0.1 33,560 + HMPREF1058_RS00205 0.41 -2.6 33,560 + HMPREF1058_RS00205 0.41 -5.3 33,560 + HMPREF1058_RS00205 0.41 -1.3 33,662 + HMPREF1058_RS00205 0.46 -2.9 33,759 + HMPREF1058_RS00205 0.50 -1.4 33,759 + HMPREF1058_RS00205 0.50 -2.9 33,837 + HMPREF1058_RS00205 0.54 -2.4 33,837 + HMPREF1058_RS00205 0.54 -2.7 33,839 + HMPREF1058_RS00205 0.54 -3.6 33,839 + HMPREF1058_RS00205 0.54 -2.4 33,959 + HMPREF1058_RS00205 0.60 -3.1 34,047 + HMPREF1058_RS00205 0.64 -2.1 34,047 + HMPREF1058_RS00205 0.64 -2.4 34,167 + HMPREF1058_RS00205 0.69 -2.4 34,189 + HMPREF1058_RS00205 0.70 +1.5 34,211 + HMPREF1058_RS00205 0.71 -3.1 34,310 + HMPREF1058_RS00205 0.76 -3.7 34,326 + HMPREF1058_RS00205 0.77 -2.5 34,458 + HMPREF1058_RS00205 0.83 -2.4 34,768 + +0.2 34,830 + -0.1 34,908 + HMPREF1058_RS00200 0.13 -2.2 35,213 + HMPREF1058_RS00200 0.55 +3.2 35,218 + HMPREF1058_RS00200 0.56 +1.9 35,220 + HMPREF1058_RS00200 0.56 -0.0 35,222 + HMPREF1058_RS00200 0.56 -0.1 35,224 + HMPREF1058_RS00200 0.57 +0.7 35,321 + HMPREF1058_RS00200 0.70 +0.5 35,321 + HMPREF1058_RS00200 0.70 -0.1 35,321 + HMPREF1058_RS00200 0.70 +0.6 35,401 + HMPREF1058_RS00200 0.81 +1.7 35,480 + +1.2 35,482 + -0.4
Or see this region's nucleotide sequence