Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00135 and HMPREF1058_RS21290 are separated by 474 nucleotides HMPREF1058_RS21290 and HMPREF1058_RS00130 are separated by 353 nucleotides HMPREF1058_RS00130 and HMPREF1058_RS00125 are separated by 16 nucleotides
HMPREF1058_RS00135: HMPREF1058_RS00135 - isoaspartyl peptidase/L-asparaginase, at 48,735 to 49,721
_RS00135
HMPREF1058_RS21290: HMPREF1058_RS21290 - left-handed beta-roll domain-containing protein, at 50,196 to 50,318
_RS21290
HMPREF1058_RS00130: HMPREF1058_RS00130 - glycosyl hydrolase family 2, at 50,672 to 53,434
_RS00130
HMPREF1058_RS00125: HMPREF1058_RS00125 - glycoside hydrolase family 28 protein, at 53,451 to 54,875
_RS00125
Position (kb) 50
51
52
53
54 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 49.725 kb on + strand at 49.881 kb on - strand at 49.901 kb on + strand at 49.982 kb on + strand at 49.983 kb on - strand at 49.987 kb on - strand at 50.005 kb on + strand at 50.005 kb on + strand at 50.005 kb on + strand at 50.071 kb on + strand at 50.072 kb on - strand at 50.072 kb on - strand at 50.177 kb on - strand at 50.299 kb on - strand, within HMPREF1058_RS21290 at 50.361 kb on - strand at 50.362 kb on + strand at 50.363 kb on - strand at 50.383 kb on + strand at 50.389 kb on + strand at 50.390 kb on - strand at 50.455 kb on + strand at 50.455 kb on + strand at 50.457 kb on + strand at 50.457 kb on + strand at 50.458 kb on - strand at 50.533 kb on + strand at 50.673 kb on + strand at 50.674 kb on - strand at 50.674 kb on - strand at 50.677 kb on + strand at 50.678 kb on - strand at 50.679 kb on + strand at 50.700 kb on - strand at 50.741 kb on - strand at 50.741 kb on - strand at 50.743 kb on - strand at 50.862 kb on - strand at 51.031 kb on + strand, within HMPREF1058_RS00130 at 51.032 kb on - strand, within HMPREF1058_RS00130 at 51.032 kb on - strand, within HMPREF1058_RS00130 at 51.034 kb on - strand, within HMPREF1058_RS00130 at 51.034 kb on - strand, within HMPREF1058_RS00130 at 51.035 kb on + strand, within HMPREF1058_RS00130 at 51.035 kb on + strand, within HMPREF1058_RS00130 at 51.275 kb on + strand, within HMPREF1058_RS00130 at 51.275 kb on + strand at 51.387 kb on - strand, within HMPREF1058_RS00130 at 51.417 kb on + strand, within HMPREF1058_RS00130 at 51.455 kb on + strand, within HMPREF1058_RS00130 at 51.456 kb on - strand, within HMPREF1058_RS00130 at 51.516 kb on + strand, within HMPREF1058_RS00130 at 51.686 kb on - strand, within HMPREF1058_RS00130 at 51.768 kb on + strand, within HMPREF1058_RS00130 at 51.803 kb on + strand, within HMPREF1058_RS00130 at 51.839 kb on - strand, within HMPREF1058_RS00130 at 51.841 kb on - strand, within HMPREF1058_RS00130 at 51.885 kb on - strand, within HMPREF1058_RS00130 at 51.910 kb on + strand, within HMPREF1058_RS00130 at 51.958 kb on + strand, within HMPREF1058_RS00130 at 51.959 kb on - strand, within HMPREF1058_RS00130 at 51.963 kb on + strand, within HMPREF1058_RS00130 at 51.966 kb on - strand, within HMPREF1058_RS00130 at 52.033 kb on + strand, within HMPREF1058_RS00130 at 52.035 kb on + strand, within HMPREF1058_RS00130 at 52.091 kb on - strand, within HMPREF1058_RS00130 at 52.098 kb on + strand, within HMPREF1058_RS00130 at 52.099 kb on - strand, within HMPREF1058_RS00130 at 52.099 kb on - strand, within HMPREF1058_RS00130 at 52.099 kb on - strand, within HMPREF1058_RS00130 at 52.263 kb on + strand, within HMPREF1058_RS00130 at 52.300 kb on - strand, within HMPREF1058_RS00130 at 52.417 kb on - strand, within HMPREF1058_RS00130 at 52.421 kb on - strand, within HMPREF1058_RS00130 at 52.421 kb on - strand, within HMPREF1058_RS00130 at 52.421 kb on - strand, within HMPREF1058_RS00130 at 52.425 kb on - strand, within HMPREF1058_RS00130 at 52.586 kb on + strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.674 kb on - strand, within HMPREF1058_RS00130 at 52.727 kb on - strand, within HMPREF1058_RS00130 at 52.791 kb on + strand, within HMPREF1058_RS00130 at 52.792 kb on - strand, within HMPREF1058_RS00130 at 52.842 kb on - strand, within HMPREF1058_RS00130 at 52.843 kb on + strand, within HMPREF1058_RS00130 at 52.843 kb on + strand at 52.843 kb on + strand, within HMPREF1058_RS00130 at 52.845 kb on + strand, within HMPREF1058_RS00130 at 52.845 kb on + strand, within HMPREF1058_RS00130 at 52.846 kb on - strand, within HMPREF1058_RS00130 at 52.846 kb on - strand, within HMPREF1058_RS00130 at 52.847 kb on + strand, within HMPREF1058_RS00130 at 52.847 kb on + strand, within HMPREF1058_RS00130 at 52.848 kb on - strand, within HMPREF1058_RS00130 at 52.890 kb on - strand, within HMPREF1058_RS00130 at 52.946 kb on - strand, within HMPREF1058_RS00130 at 52.947 kb on + strand, within HMPREF1058_RS00130 at 52.948 kb on - strand, within HMPREF1058_RS00130 at 52.964 kb on + strand, within HMPREF1058_RS00130 at 53.009 kb on + strand, within HMPREF1058_RS00130 at 53.041 kb on - strand, within HMPREF1058_RS00130 at 53.041 kb on - strand, within HMPREF1058_RS00130 at 53.054 kb on - strand, within HMPREF1058_RS00130 at 53.077 kb on + strand, within HMPREF1058_RS00130 at 53.122 kb on + strand, within HMPREF1058_RS00130 at 53.123 kb on - strand, within HMPREF1058_RS00130 at 53.141 kb on - strand, within HMPREF1058_RS00130 at 53.174 kb on - strand at 53.232 kb on + strand at 53.237 kb on - strand at 53.290 kb on - strand at 53.498 kb on - strand at 53.565 kb on + strand at 53.565 kb on + strand at 53.693 kb on + strand, within HMPREF1058_RS00125 at 53.710 kb on + strand, within HMPREF1058_RS00125 at 53.711 kb on - strand, within HMPREF1058_RS00125 at 53.715 kb on - strand, within HMPREF1058_RS00125 at 53.933 kb on + strand, within HMPREF1058_RS00125 at 54.009 kb on + strand, within HMPREF1058_RS00125 at 54.159 kb on + strand, within HMPREF1058_RS00125 at 54.273 kb on + strand, within HMPREF1058_RS00125 at 54.307 kb on - strand, within HMPREF1058_RS00125 at 54.331 kb on - strand, within HMPREF1058_RS00125
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 49,725 + +2.6 49,881 - -0.9 49,901 + +2.9 49,982 + +0.0 49,983 - -0.1 49,987 - +2.2 50,005 + +1.8 50,005 + -0.1 50,005 + -1.1 50,071 + +0.5 50,072 - +1.6 50,072 - -1.7 50,177 - +0.2 50,299 - HMPREF1058_RS21290 0.84 -1.1 50,361 - +0.7 50,362 + +1.2 50,363 - -1.1 50,383 + -0.3 50,389 + +0.2 50,390 - +1.1 50,455 + +0.9 50,455 + +0.5 50,457 + +1.4 50,457 + +0.1 50,458 - -1.1 50,533 + +0.3 50,673 + +1.4 50,674 - -0.2 50,674 - +2.2 50,677 + +0.4 50,678 - -0.1 50,679 + -0.8 50,700 - +0.7 50,741 - +1.1 50,741 - -0.4 50,743 - +1.2 50,862 - +0.1 51,031 + HMPREF1058_RS00130 0.13 -1.1 51,032 - HMPREF1058_RS00130 0.13 -0.3 51,032 - HMPREF1058_RS00130 0.13 +0.6 51,034 - HMPREF1058_RS00130 0.13 -1.7 51,034 - HMPREF1058_RS00130 0.13 +0.4 51,035 + HMPREF1058_RS00130 0.13 -0.1 51,035 + HMPREF1058_RS00130 0.13 -1.1 51,275 + HMPREF1058_RS00130 0.22 +0.9 51,275 + -1.1 51,387 - HMPREF1058_RS00130 0.26 +1.9 51,417 + HMPREF1058_RS00130 0.27 +2.6 51,455 + HMPREF1058_RS00130 0.28 +0.8 51,456 - HMPREF1058_RS00130 0.28 -1.6 51,516 + HMPREF1058_RS00130 0.31 +0.1 51,686 - HMPREF1058_RS00130 0.37 -1.5 51,768 + HMPREF1058_RS00130 0.40 +1.1 51,803 + HMPREF1058_RS00130 0.41 +1.1 51,839 - HMPREF1058_RS00130 0.42 -0.4 51,841 - HMPREF1058_RS00130 0.42 -1.1 51,885 - HMPREF1058_RS00130 0.44 -0.6 51,910 + HMPREF1058_RS00130 0.45 +3.7 51,958 + HMPREF1058_RS00130 0.47 +1.7 51,959 - HMPREF1058_RS00130 0.47 +1.0 51,963 + HMPREF1058_RS00130 0.47 +2.2 51,966 - HMPREF1058_RS00130 0.47 -0.8 52,033 + HMPREF1058_RS00130 0.49 +2.6 52,035 + HMPREF1058_RS00130 0.49 -3.9 52,091 - HMPREF1058_RS00130 0.51 +0.4 52,098 + HMPREF1058_RS00130 0.52 +3.5 52,099 - HMPREF1058_RS00130 0.52 +0.6 52,099 - HMPREF1058_RS00130 0.52 +0.9 52,099 - HMPREF1058_RS00130 0.52 +1.6 52,263 + HMPREF1058_RS00130 0.58 -1.2 52,300 - HMPREF1058_RS00130 0.59 +0.3 52,417 - HMPREF1058_RS00130 0.63 +0.1 52,421 - HMPREF1058_RS00130 0.63 -0.1 52,421 - HMPREF1058_RS00130 0.63 +0.9 52,421 - HMPREF1058_RS00130 0.63 -0.2 52,425 - HMPREF1058_RS00130 0.63 +0.9 52,586 + HMPREF1058_RS00130 0.69 +0.9 52,674 - HMPREF1058_RS00130 0.72 -1.4 52,674 - HMPREF1058_RS00130 0.72 -0.9 52,674 - HMPREF1058_RS00130 0.72 +1.2 52,727 - HMPREF1058_RS00130 0.74 +1.1 52,791 + HMPREF1058_RS00130 0.77 +0.4 52,792 - HMPREF1058_RS00130 0.77 +1.8 52,842 - HMPREF1058_RS00130 0.79 +0.4 52,843 + HMPREF1058_RS00130 0.79 +0.5 52,843 + +1.2 52,843 + HMPREF1058_RS00130 0.79 +3.1 52,845 + HMPREF1058_RS00130 0.79 -1.1 52,845 + HMPREF1058_RS00130 0.79 -1.6 52,846 - HMPREF1058_RS00130 0.79 +0.7 52,846 - HMPREF1058_RS00130 0.79 -0.5 52,847 + HMPREF1058_RS00130 0.79 +0.1 52,847 + HMPREF1058_RS00130 0.79 -0.1 52,848 - HMPREF1058_RS00130 0.79 -2.1 52,890 - HMPREF1058_RS00130 0.80 +2.2 52,946 - HMPREF1058_RS00130 0.82 +0.2 52,947 + HMPREF1058_RS00130 0.82 -1.1 52,948 - HMPREF1058_RS00130 0.82 +2.3 52,964 + HMPREF1058_RS00130 0.83 +0.7 53,009 + HMPREF1058_RS00130 0.85 +0.2 53,041 - HMPREF1058_RS00130 0.86 -0.1 53,041 - HMPREF1058_RS00130 0.86 +1.5 53,054 - HMPREF1058_RS00130 0.86 +0.7 53,077 + HMPREF1058_RS00130 0.87 -0.3 53,122 + HMPREF1058_RS00130 0.89 +2.5 53,123 - HMPREF1058_RS00130 0.89 +0.9 53,141 - HMPREF1058_RS00130 0.89 -0.5 53,174 - +1.7 53,232 + +0.3 53,237 - +1.6 53,290 - -0.1 53,498 - -1.6 53,565 + -0.1 53,565 + +0.0 53,693 + HMPREF1058_RS00125 0.17 -2.9 53,710 + HMPREF1058_RS00125 0.18 +3.5 53,711 - HMPREF1058_RS00125 0.18 +0.4 53,715 - HMPREF1058_RS00125 0.19 +0.8 53,933 + HMPREF1058_RS00125 0.34 -1.6 54,009 + HMPREF1058_RS00125 0.39 -0.1 54,159 + HMPREF1058_RS00125 0.50 +0.8 54,273 + HMPREF1058_RS00125 0.58 -1.1 54,307 - HMPREF1058_RS00125 0.60 +2.3 54,331 - HMPREF1058_RS00125 0.62 -0.5
Or see this region's nucleotide sequence