Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00120 and HMPREF1058_RS00115 overlap by 4 nucleotides HMPREF1058_RS00115 and HMPREF1058_RS00110 overlap by 23 nucleotides HMPREF1058_RS00110 and HMPREF1058_RS00105 are separated by 17 nucleotides
HMPREF1058_RS00120: HMPREF1058_RS00120 - hypothetical protein, at 54,891 to 55,694
_RS00120
HMPREF1058_RS00115: HMPREF1058_RS00115 - DUF4450 domain-containing protein, at 55,691 to 56,389
_RS00115
HMPREF1058_RS00110: HMPREF1058_RS00110 - right-handed parallel beta-helix repeat-containing protein, at 56,367 to 57,851
_RS00110
HMPREF1058_RS00105: HMPREF1058_RS00105 - rhamnogalacturonan acetylesterase, at 57,869 to 59,143
_RS00105
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 55.547 kb on + strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.548 kb on - strand, within HMPREF1058_RS00120 at 55.591 kb on - strand, within HMPREF1058_RS00120 at 55.676 kb on - strand at 55.747 kb on + strand at 55.806 kb on - strand, within HMPREF1058_RS00115 at 55.873 kb on + strand, within HMPREF1058_RS00115 at 55.953 kb on + strand, within HMPREF1058_RS00115 at 55.953 kb on + strand, within HMPREF1058_RS00115 at 55.954 kb on - strand at 55.960 kb on + strand, within HMPREF1058_RS00115 at 56.117 kb on - strand, within HMPREF1058_RS00115 at 56.125 kb on + strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.145 kb on - strand, within HMPREF1058_RS00115 at 56.370 kb on + strand at 56.390 kb on - strand at 56.448 kb on + strand at 56.512 kb on - strand at 56.583 kb on - strand, within HMPREF1058_RS00110 at 56.622 kb on + strand, within HMPREF1058_RS00110 at 56.622 kb on + strand, within HMPREF1058_RS00110 at 56.727 kb on - strand, within HMPREF1058_RS00110 at 56.732 kb on - strand, within HMPREF1058_RS00110 at 56.732 kb on - strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.735 kb on + strand, within HMPREF1058_RS00110 at 56.736 kb on - strand, within HMPREF1058_RS00110 at 56.736 kb on - strand, within HMPREF1058_RS00110 at 56.806 kb on + strand, within HMPREF1058_RS00110 at 56.887 kb on + strand, within HMPREF1058_RS00110 at 57.057 kb on + strand, within HMPREF1058_RS00110 at 57.104 kb on + strand, within HMPREF1058_RS00110 at 57.138 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.165 kb on - strand, within HMPREF1058_RS00110 at 57.178 kb on + strand, within HMPREF1058_RS00110 at 57.234 kb on + strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.237 kb on - strand, within HMPREF1058_RS00110 at 57.260 kb on + strand, within HMPREF1058_RS00110 at 57.341 kb on + strand, within HMPREF1058_RS00110 at 57.342 kb on - strand, within HMPREF1058_RS00110 at 57.375 kb on - strand, within HMPREF1058_RS00110 at 57.389 kb on + strand, within HMPREF1058_RS00110 at 57.477 kb on + strand, within HMPREF1058_RS00110 at 57.478 kb on - strand, within HMPREF1058_RS00110 at 57.531 kb on + strand, within HMPREF1058_RS00110 at 57.536 kb on + strand, within HMPREF1058_RS00110 at 57.810 kb on + strand at 57.811 kb on - strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.831 kb on + strand at 57.835 kb on - strand at 57.860 kb on - strand at 57.871 kb on - strand at 57.989 kb on - strand at 58.022 kb on - strand, within HMPREF1058_RS00105 at 58.064 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.116 kb on - strand, within HMPREF1058_RS00105 at 58.358 kb on - strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.368 kb on + strand, within HMPREF1058_RS00105 at 58.369 kb on - strand, within HMPREF1058_RS00105 at 58.513 kb on - strand, within HMPREF1058_RS00105 at 58.592 kb on + strand, within HMPREF1058_RS00105 at 58.633 kb on + strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.634 kb on - strand, within HMPREF1058_RS00105 at 58.693 kb on + strand, within HMPREF1058_RS00105 at 58.762 kb on + strand, within HMPREF1058_RS00105 at 58.792 kb on + strand, within HMPREF1058_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 55,547 + HMPREF1058_RS00120 0.82 +0.7 55,548 - HMPREF1058_RS00120 0.82 -2.9 55,548 - HMPREF1058_RS00120 0.82 -0.1 55,591 - HMPREF1058_RS00120 0.87 +0.9 55,676 - +0.9 55,747 + -1.5 55,806 - HMPREF1058_RS00115 0.16 -1.7 55,873 + HMPREF1058_RS00115 0.26 +1.2 55,953 + HMPREF1058_RS00115 0.37 +0.2 55,953 + HMPREF1058_RS00115 0.37 -1.1 55,954 - -0.1 55,960 + HMPREF1058_RS00115 0.38 -0.5 56,117 - HMPREF1058_RS00115 0.61 +3.6 56,125 + HMPREF1058_RS00115 0.62 -0.8 56,145 - HMPREF1058_RS00115 0.65 +0.6 56,145 - HMPREF1058_RS00115 0.65 -1.0 56,145 - HMPREF1058_RS00115 0.65 +1.4 56,370 + +1.7 56,390 - -0.6 56,448 + +1.9 56,512 - -1.7 56,583 - HMPREF1058_RS00110 0.15 +0.6 56,622 + HMPREF1058_RS00110 0.17 +1.5 56,622 + HMPREF1058_RS00110 0.17 -1.2 56,727 - HMPREF1058_RS00110 0.24 -1.1 56,732 - HMPREF1058_RS00110 0.25 -1.1 56,732 - HMPREF1058_RS00110 0.25 -0.1 56,735 + HMPREF1058_RS00110 0.25 -2.1 56,735 + HMPREF1058_RS00110 0.25 -0.4 56,735 + HMPREF1058_RS00110 0.25 +1.5 56,736 - HMPREF1058_RS00110 0.25 +0.6 56,736 - HMPREF1058_RS00110 0.25 +0.9 56,806 + HMPREF1058_RS00110 0.30 +0.2 56,887 + HMPREF1058_RS00110 0.35 -0.1 57,057 + HMPREF1058_RS00110 0.46 +0.3 57,104 + HMPREF1058_RS00110 0.50 +0.9 57,138 - HMPREF1058_RS00110 0.52 -0.7 57,165 - HMPREF1058_RS00110 0.54 -3.1 57,165 - HMPREF1058_RS00110 0.54 +1.5 57,178 + HMPREF1058_RS00110 0.55 -0.9 57,234 + HMPREF1058_RS00110 0.58 -0.1 57,237 - HMPREF1058_RS00110 0.59 +0.6 57,237 - HMPREF1058_RS00110 0.59 -3.1 57,260 + HMPREF1058_RS00110 0.60 -1.7 57,341 + HMPREF1058_RS00110 0.66 +1.5 57,342 - HMPREF1058_RS00110 0.66 -0.5 57,375 - HMPREF1058_RS00110 0.68 -0.7 57,389 + HMPREF1058_RS00110 0.69 -1.7 57,477 + HMPREF1058_RS00110 0.75 -1.1 57,478 - HMPREF1058_RS00110 0.75 -0.6 57,531 + HMPREF1058_RS00110 0.78 +0.4 57,536 + HMPREF1058_RS00110 0.79 -0.3 57,810 + +0.1 57,811 - +0.5 57,831 + +0.9 57,831 + -0.3 57,831 + -0.4 57,835 - -0.5 57,860 - -0.1 57,871 - +1.6 57,989 - -2.4 58,022 - HMPREF1058_RS00105 0.12 -0.1 58,064 - HMPREF1058_RS00105 0.15 -0.3 58,116 - HMPREF1058_RS00105 0.19 -0.1 58,116 - HMPREF1058_RS00105 0.19 +1.9 58,358 - HMPREF1058_RS00105 0.38 +0.6 58,368 + HMPREF1058_RS00105 0.39 -0.9 58,368 + HMPREF1058_RS00105 0.39 +0.2 58,369 - HMPREF1058_RS00105 0.39 -1.1 58,513 - HMPREF1058_RS00105 0.51 -1.9 58,592 + HMPREF1058_RS00105 0.57 -2.7 58,633 + HMPREF1058_RS00105 0.60 -1.7 58,634 - HMPREF1058_RS00105 0.60 +0.7 58,634 - HMPREF1058_RS00105 0.60 +0.8 58,693 + HMPREF1058_RS00105 0.65 +2.2 58,762 + HMPREF1058_RS00105 0.70 -2.1 58,792 + HMPREF1058_RS00105 0.72 -0.4
Or see this region's nucleotide sequence