Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04532 and MPMX20_04533 are separated by 48 nucleotides MPMX20_04533 and MPMX20_04534 are separated by 200 nucleotides MPMX20_04534 and MPMX20_04535 are separated by 119 nucleotides
MPMX20_04532: MPMX20_04532 - Met repressor, at 4,745,725 to 4,746,042
_04532
MPMX20_04533: MPMX20_04533 - 50S ribosomal protein L31, at 4,746,091 to 4,746,303
_04533
MPMX20_04534: MPMX20_04534 - Primosomal protein N', at 4,746,504 to 4,748,699
_04534
MPMX20_04535: MPMX20_04535 - HTH-type transcriptional repressor CytR, at 4,748,819 to 4,749,844
_04535
Position (kb)
4746
4747
4748
4749 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4745.633 kb on - strand at 4745.637 kb on + strand at 4745.667 kb on - strand at 4745.710 kb on + strand at 4745.710 kb on + strand at 4745.820 kb on - strand, within MPMX20_04532 at 4745.893 kb on + strand, within MPMX20_04532 at 4745.953 kb on - strand, within MPMX20_04532 at 4745.953 kb on - strand, within MPMX20_04532 at 4746.002 kb on - strand, within MPMX20_04532 at 4746.117 kb on - strand, within MPMX20_04533 at 4746.464 kb on + strand at 4748.695 kb on + strand at 4748.703 kb on - strand at 4748.703 kb on - strand at 4748.891 kb on + strand at 4748.899 kb on - strand at 4748.899 kb on - strand at 4748.943 kb on + strand, within MPMX20_04535 at 4748.945 kb on - strand, within MPMX20_04535 at 4748.946 kb on + strand, within MPMX20_04535 at 4749.002 kb on - strand, within MPMX20_04535 at 4749.026 kb on + strand, within MPMX20_04535 at 4749.048 kb on + strand, within MPMX20_04535 at 4749.064 kb on - strand, within MPMX20_04535 at 4749.091 kb on - strand, within MPMX20_04535 at 4749.109 kb on - strand, within MPMX20_04535 at 4749.145 kb on - strand, within MPMX20_04535 at 4749.180 kb on - strand, within MPMX20_04535 at 4749.210 kb on + strand, within MPMX20_04535 at 4749.242 kb on - strand, within MPMX20_04535 at 4749.252 kb on + strand, within MPMX20_04535 at 4749.323 kb on - strand, within MPMX20_04535 at 4749.351 kb on + strand, within MPMX20_04535 at 4749.502 kb on - strand, within MPMX20_04535 at 4749.532 kb on - strand, within MPMX20_04535 at 4749.569 kb on + strand, within MPMX20_04535 at 4749.623 kb on - strand, within MPMX20_04535 at 4749.694 kb on + strand, within MPMX20_04535
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 4,745,633 - +0.0 4,745,637 + +1.1 4,745,667 - -0.3 4,745,710 + -0.3 4,745,710 + -2.5 4,745,820 - MPMX20_04532 0.30 +1.6 4,745,893 + MPMX20_04532 0.53 -1.2 4,745,953 - MPMX20_04532 0.72 -1.3 4,745,953 - MPMX20_04532 0.72 +0.7 4,746,002 - MPMX20_04532 0.87 +0.0 4,746,117 - MPMX20_04533 0.12 +2.1 4,746,464 + -0.3 4,748,695 + -0.2 4,748,703 - +1.2 4,748,703 - +0.6 4,748,891 + -1.0 4,748,899 - +2.3 4,748,899 - -0.1 4,748,943 + MPMX20_04535 0.12 -1.3 4,748,945 - MPMX20_04535 0.12 -1.2 4,748,946 + MPMX20_04535 0.12 -0.6 4,749,002 - MPMX20_04535 0.18 +0.2 4,749,026 + MPMX20_04535 0.20 -0.2 4,749,048 + MPMX20_04535 0.22 +0.4 4,749,064 - MPMX20_04535 0.24 -0.4 4,749,091 - MPMX20_04535 0.27 -0.3 4,749,109 - MPMX20_04535 0.28 +1.0 4,749,145 - MPMX20_04535 0.32 -0.4 4,749,180 - MPMX20_04535 0.35 -1.7 4,749,210 + MPMX20_04535 0.38 +0.3 4,749,242 - MPMX20_04535 0.41 -0.3 4,749,252 + MPMX20_04535 0.42 -2.4 4,749,323 - MPMX20_04535 0.49 -1.4 4,749,351 + MPMX20_04535 0.52 -1.7 4,749,502 - MPMX20_04535 0.67 +2.1 4,749,532 - MPMX20_04535 0.69 +1.0 4,749,569 + MPMX20_04535 0.73 -1.4 4,749,623 - MPMX20_04535 0.78 +0.1 4,749,694 + MPMX20_04535 0.85 -0.7
Or see this region's nucleotide sequence