Experiment: 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04492 and MPMX20_04493 are separated by 6 nucleotides MPMX20_04493 and MPMX20_04494 are separated by 48 nucleotides
MPMX20_04492: MPMX20_04492 - ATP-dependent RNA helicase RhlB, at 4,696,889 to 4,698,154
_04492
MPMX20_04493: MPMX20_04493 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 4,698,161 to 4,699,645
_04493
MPMX20_04494: MPMX20_04494 - ATP-dependent DNA helicase Rep, at 4,699,694 to 4,701,718
_04494
Position (kb)
4698
4699
4700 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4697.180 kb on + strand, within MPMX20_04492 at 4697.188 kb on - strand, within MPMX20_04492 at 4697.188 kb on - strand, within MPMX20_04492 at 4697.209 kb on + strand, within MPMX20_04492 at 4697.239 kb on + strand, within MPMX20_04492 at 4697.247 kb on - strand, within MPMX20_04492 at 4697.331 kb on + strand, within MPMX20_04492 at 4697.346 kb on + strand, within MPMX20_04492 at 4697.346 kb on + strand, within MPMX20_04492 at 4697.353 kb on + strand, within MPMX20_04492 at 4697.353 kb on + strand, within MPMX20_04492 at 4697.476 kb on + strand, within MPMX20_04492 at 4697.583 kb on + strand, within MPMX20_04492 at 4697.596 kb on - strand, within MPMX20_04492 at 4697.647 kb on + strand, within MPMX20_04492 at 4697.727 kb on + strand, within MPMX20_04492 at 4697.821 kb on - strand, within MPMX20_04492 at 4697.877 kb on + strand, within MPMX20_04492 at 4697.879 kb on - strand, within MPMX20_04492 at 4697.907 kb on + strand, within MPMX20_04492 at 4697.916 kb on + strand, within MPMX20_04492 at 4698.130 kb on + strand at 4698.176 kb on - strand at 4698.246 kb on + strand at 4698.293 kb on + strand at 4698.293 kb on + strand at 4698.301 kb on - strand at 4698.301 kb on - strand at 4698.301 kb on - strand at 4698.318 kb on + strand, within MPMX20_04493 at 4698.321 kb on - strand, within MPMX20_04493 at 4698.349 kb on + strand, within MPMX20_04493 at 4698.381 kb on - strand, within MPMX20_04493 at 4698.397 kb on - strand, within MPMX20_04493 at 4698.541 kb on - strand, within MPMX20_04493 at 4698.637 kb on - strand, within MPMX20_04493 at 4698.660 kb on + strand, within MPMX20_04493 at 4698.680 kb on - strand, within MPMX20_04493 at 4698.742 kb on - strand, within MPMX20_04493 at 4698.746 kb on + strand, within MPMX20_04493 at 4698.793 kb on + strand, within MPMX20_04493 at 4698.835 kb on + strand, within MPMX20_04493 at 4698.835 kb on + strand, within MPMX20_04493 at 4698.843 kb on - strand, within MPMX20_04493 at 4698.843 kb on - strand, within MPMX20_04493 at 4698.843 kb on - strand, within MPMX20_04493 at 4698.874 kb on + strand, within MPMX20_04493 at 4698.881 kb on - strand, within MPMX20_04493 at 4699.016 kb on - strand, within MPMX20_04493 at 4699.040 kb on + strand, within MPMX20_04493 at 4699.045 kb on + strand, within MPMX20_04493 at 4699.048 kb on - strand, within MPMX20_04493 at 4699.053 kb on - strand, within MPMX20_04493 at 4699.157 kb on - strand, within MPMX20_04493 at 4699.196 kb on + strand, within MPMX20_04493 at 4699.230 kb on + strand, within MPMX20_04493 at 4699.241 kb on - strand, within MPMX20_04493 at 4699.277 kb on + strand, within MPMX20_04493 at 4699.331 kb on - strand, within MPMX20_04493 at 4699.364 kb on - strand, within MPMX20_04493 at 4699.380 kb on - strand, within MPMX20_04493 at 4699.380 kb on - strand, within MPMX20_04493 at 4699.388 kb on - strand, within MPMX20_04493 at 4699.423 kb on + strand, within MPMX20_04493 at 4699.513 kb on + strand at 4699.682 kb on - strand at 4699.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Agromyces sp. SAI_196 remove 4,697,180 + MPMX20_04492 0.23 -0.2 4,697,188 - MPMX20_04492 0.24 +1.7 4,697,188 - MPMX20_04492 0.24 -0.6 4,697,209 + MPMX20_04492 0.25 -0.6 4,697,239 + MPMX20_04492 0.28 +0.6 4,697,247 - MPMX20_04492 0.28 +0.0 4,697,331 + MPMX20_04492 0.35 -0.5 4,697,346 + MPMX20_04492 0.36 -0.4 4,697,346 + MPMX20_04492 0.36 -1.6 4,697,353 + MPMX20_04492 0.37 +1.0 4,697,353 + MPMX20_04492 0.37 -0.3 4,697,476 + MPMX20_04492 0.46 +2.6 4,697,583 + MPMX20_04492 0.55 +0.1 4,697,596 - MPMX20_04492 0.56 -1.5 4,697,647 + MPMX20_04492 0.60 +0.6 4,697,727 + MPMX20_04492 0.66 -1.1 4,697,821 - MPMX20_04492 0.74 -0.9 4,697,877 + MPMX20_04492 0.78 -0.5 4,697,879 - MPMX20_04492 0.78 +0.2 4,697,907 + MPMX20_04492 0.80 +0.3 4,697,916 + MPMX20_04492 0.81 -1.3 4,698,130 + -0.3 4,698,176 - -1.1 4,698,246 + -2.4 4,698,293 + +0.3 4,698,293 + -3.0 4,698,301 - -1.6 4,698,301 - -0.3 4,698,301 - -1.0 4,698,318 + MPMX20_04493 0.11 -1.7 4,698,321 - MPMX20_04493 0.11 -2.1 4,698,349 + MPMX20_04493 0.13 -0.2 4,698,381 - MPMX20_04493 0.15 -1.9 4,698,397 - MPMX20_04493 0.16 -0.3 4,698,541 - MPMX20_04493 0.26 +1.6 4,698,637 - MPMX20_04493 0.32 -3.1 4,698,660 + MPMX20_04493 0.34 -0.4 4,698,680 - MPMX20_04493 0.35 -1.5 4,698,742 - MPMX20_04493 0.39 -1.9 4,698,746 + MPMX20_04493 0.39 -1.0 4,698,793 + MPMX20_04493 0.43 -1.5 4,698,835 + MPMX20_04493 0.45 -0.4 4,698,835 + MPMX20_04493 0.45 -0.6 4,698,843 - MPMX20_04493 0.46 +2.6 4,698,843 - MPMX20_04493 0.46 -0.4 4,698,843 - MPMX20_04493 0.46 -2.1 4,698,874 + MPMX20_04493 0.48 -1.6 4,698,881 - MPMX20_04493 0.48 -0.9 4,699,016 - MPMX20_04493 0.58 -1.4 4,699,040 + MPMX20_04493 0.59 -0.9 4,699,045 + MPMX20_04493 0.60 +2.0 4,699,048 - MPMX20_04493 0.60 -1.7 4,699,053 - MPMX20_04493 0.60 +2.6 4,699,157 - MPMX20_04493 0.67 +0.3 4,699,196 + MPMX20_04493 0.70 +2.0 4,699,230 + MPMX20_04493 0.72 -2.1 4,699,241 - MPMX20_04493 0.73 -2.9 4,699,277 + MPMX20_04493 0.75 -0.9 4,699,331 - MPMX20_04493 0.79 -1.9 4,699,364 - MPMX20_04493 0.81 -0.7 4,699,380 - MPMX20_04493 0.82 -0.2 4,699,380 - MPMX20_04493 0.82 -0.6 4,699,388 - MPMX20_04493 0.83 +0.6 4,699,423 + MPMX20_04493 0.85 -1.2 4,699,513 + -0.2 4,699,682 - +0.3 4,699,814 - -0.7
Or see this region's nucleotide sequence